RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 PTPN3P26045 913 aa18.7■□□□□ 0.58
USP39-209ENST00000458268 NFATC4Q14934 902 aa18.7■□□□□ 0.58
USP39-209ENST00000458268 TAZQ16635 292 aa18.7■□□□□ 0.58
USP39-209ENST00000458268 ALG1LQ6GMV1 187 aa18.7■□□□□ 0.58
USP39-209ENST00000458268 CRTC1Q6UUV9 634 aa18.7■□□□□ 0.58
USP39-209ENST00000458268 Q6ZVL8 140 aa18.7■□□□□ 0.58
USP39-209ENST00000458268 GLRX5Q86SX6 157 aa18.7■□□□□ 0.58
USP39-209ENST00000458268 NT5DC3Q86UY8 548 aa18.7■□□□□ 0.58
USP39-209ENST00000458268 MARCH9Q86YJ5 346 aa18.7■□□□□ 0.58
USP39-209ENST00000458268 SYCE1Q8N0S2 351 aa18.7■□□□□ 0.58
USP39-209ENST00000458268 PELI3Q8N2H9 469 aa18.7■□□□□ 0.58
USP39-209ENST00000458268 UBL4BQ8N7F7 174 aa18.7■□□□□ 0.58
USP39-209ENST00000458268 SPATA22Q8NHS9 363 aa18.7■□□□□ 0.58
USP39-209ENST00000458268 IFT43Q96FT9 208 aa18.7■□□□□ 0.58
USP39-209ENST00000458268 COQ10AQ96MF6 247 aa18.7■□□□□ 0.58
USP39-209ENST00000458268 WDR92Q96MX6 357 aa18.7■□□□□ 0.58
USP39-209ENST00000458268 HERPUD2Q9BSE4 406 aa18.7■□□□□ 0.58
USP39-209ENST00000458268 OSBPL8Q9BZF1 889 aa18.7■□□□□ 0.58
USP39-209ENST00000458268 BRD8Q9H0E9 1235 aa18.7■□□□□ 0.58
USP39-209ENST00000458268 WDR26Q9H7D7 661 aa18.7■□□□□ 0.58
USP39-209ENST00000458268 TOR4AQ9NXH8 423 aa18.7■□□□□ 0.58
USP39-209ENST00000458268 SPASTQ9UBP0 616 aa18.7■□□□□ 0.58
USP39-209ENST00000458268 PNMA8BQ9ULN7 279 aaPredicted RBP18.7■□□□□ 0.58
USP39-209ENST00000458268 ARID1BQ8NFD5 2236 aaPredicted RBP18.7■□□□□ 0.58
USP39-209ENST00000458268 LRP4O75096 1905 aa18.7■□□□□ 0.58
USP39-209ENST00000458268 CFAP69A5D8W1 941 aa18.69■□□□□ 0.58
USP39-209ENST00000458268 FZD6O60353 706 aa18.69■□□□□ 0.58
USP39-209ENST00000458268 MMP2P08253 660 aa18.69■□□□□ 0.58
USP39-209ENST00000458268 NFKB1P19838 968 aa18.69■□□□□ 0.58
USP39-209ENST00000458268 PRKD1Q15139 912 aaPredicted RBP18.69■□□□□ 0.58
USP39-209ENST00000458268 PPP2R5EQ16537 467 aa18.69■□□□□ 0.58
USP39-209ENST00000458268 DOK6Q6PKX4 331 aa18.69■□□□□ 0.58
USP39-209ENST00000458268 RFLNAQ6ZTI6 216 aa18.69■□□□□ 0.58
USP39-209ENST00000458268 BBS12Q6ZW61 710 aa18.69■□□□□ 0.58
USP39-209ENST00000458268 LRRC57Q8N9N7 239 aa18.69■□□□□ 0.58
USP39-209ENST00000458268 OR4C6Q8NH72 309 aa18.69■□□□□ 0.58
USP39-209ENST00000458268 BTN2A2Q8WVV5 523 aa18.69■□□□□ 0.58
USP39-209ENST00000458268 ADAMTS14Q8WXS8 1223 aa18.69■□□□□ 0.58
USP39-209ENST00000458268 ALG3Q92685 438 aa18.69■□□□□ 0.58
USP39-209ENST00000458268 FUBP1Q96AE4 644 aaKnown RBP18.69■□□□□ 0.58
USP39-209ENST00000458268 DTD2Q96FN9 168 aa18.69■□□□□ 0.58
USP39-209ENST00000458268 MCCC1Q96RQ3 725 aaPredicted RBP18.69■□□□□ 0.58
USP39-209ENST00000458268 LRRC61Q9BV99 259 aa18.69■□□□□ 0.58
USP39-209ENST00000458268 GLOD4Q9HC38 313 aa18.69■□□□□ 0.58
USP39-209ENST00000458268 CAPN6Q9Y6Q1 641 aa18.69■□□□□ 0.58
USP39-209ENST00000458268 PTPRBP23467 1997 aa18.69■□□□□ 0.58
USP39-209ENST00000458268 C1orf232A0A0U1RR37 186 aa18.68■□□□□ 0.58
USP39-209ENST00000458268 FAM149AA5PLN7 773 aa18.68■□□□□ 0.58
USP39-209ENST00000458268 CAPN8A6NHC0 703 aa18.68■□□□□ 0.58
USP39-209ENST00000458268 RFPL3O75679 317 aa18.68■□□□□ 0.58
USP39-209ENST00000458268 RASGRP1O95267 797 aa18.68■□□□□ 0.58
USP39-209ENST00000458268 CLDN7O95471 211 aa18.68■□□□□ 0.58
USP39-209ENST00000458268 MT-CYBP00156 380 aaPredicted RBP18.68■□□□□ 0.58
USP39-209ENST00000458268 CELA2BP08218 269 aaPredicted RBP18.68■□□□□ 0.58
USP39-209ENST00000458268 C1SP09871 688 aa18.68■□□□□ 0.58
USP39-209ENST00000458268 PYGMP11217 842 aa18.68■□□□□ 0.58
USP39-209ENST00000458268 SRP54P61011 504 aaKnown RBP18.68■□□□□ 0.58
USP39-209ENST00000458268 OTUD4Q01804 1114 aaKnown RBP18.68■□□□□ 0.58
USP39-209ENST00000458268 QPCTQ16769 361 aa18.68■□□□□ 0.58
USP39-209ENST00000458268 ALG11Q2TAA5 492 aa18.68■□□□□ 0.58
USP39-209ENST00000458268 TEX44Q53QW1 395 aa18.68■□□□□ 0.58
USP39-209ENST00000458268 PNCKQ6P2M8 343 aa18.68■□□□□ 0.58
USP39-209ENST00000458268 PID1Q7Z2X4 250 aa18.68■□□□□ 0.58
USP39-209ENST00000458268 RAB44Q7Z6P3 723 aaPredicted RBP18.68■□□□□ 0.58
USP39-209ENST00000458268 HEATR4Q86WZ0 1026 aa18.68■□□□□ 0.58
USP39-209ENST00000458268 ATL2Q8NHH9 583 aa18.68■□□□□ 0.58
USP39-209ENST00000458268 ACTL9Q8TC94 416 aa18.68■□□□□ 0.58
USP39-209ENST00000458268 PDXPQ96GD0 296 aa18.68■□□□□ 0.58
USP39-209ENST00000458268 QKIQ96PU8 341 aaKnown RBP eCLIP18.68■□□□□ 0.58
USP39-209ENST00000458268 MLPHQ9BV36 600 aaPredicted RBP18.68■□□□□ 0.58
USP39-209ENST00000458268 ADGRE3Q9BY15 652 aa18.68■□□□□ 0.58
USP39-209ENST00000458268 SLC25A51Q9H1U9 297 aa18.68■□□□□ 0.58
USP39-209ENST00000458268 MRPL40Q9NQ50 206 aaKnown RBP18.68■□□□□ 0.58
USP39-209ENST00000458268 ADGRG1Q9Y653 693 aa18.68■□□□□ 0.58
USP39-209ENST00000458268 GOLGA4Q13439 2230 aaKnown RBP18.68■□□□□ 0.58
USP39-209ENST00000458268 TMEM202A6NGA9 273 aa18.67■□□□□ 0.58
USP39-209ENST00000458268 APOC4-APOC2K7ER74 178 aa18.67■□□□□ 0.58
USP39-209ENST00000458268 TOR1BO14657 336 aa18.67■□□□□ 0.58
USP39-209ENST00000458268 ARHGAP6O43182 974 aa18.67■□□□□ 0.58
USP39-209ENST00000458268 PRLP01236 227 aa18.67■□□□□ 0.58
USP39-209ENST00000458268 APOC2P02655 101 aa18.67■□□□□ 0.58
USP39-209ENST00000458268 ANXA6P08133 673 aa18.67■□□□□ 0.58
USP39-209ENST00000458268 TSHRP16473 764 aa18.67■□□□□ 0.58
USP39-209ENST00000458268 CKMT2P17540 419 aa18.67■□□□□ 0.58
USP39-209ENST00000458268 RBL1P28749 1068 aa18.67■□□□□ 0.58
USP39-209ENST00000458268 TNNT3P45378 269 aaPredicted RBP18.67■□□□□ 0.58
USP39-209ENST00000458268 GPR1P46091 355 aa18.67■□□□□ 0.58
USP39-209ENST00000458268 PEX5P50542 639 aa18.67■□□□□ 0.58
USP39-209ENST00000458268 EIF3EP60228 445 aaKnown RBP18.67■□□□□ 0.58
USP39-209ENST00000458268 COPS2P61201 443 aa18.67■□□□□ 0.58
USP39-209ENST00000458268 AGERQ15109 404 aa18.67■□□□□ 0.58
USP39-209ENST00000458268 KCTD16Q68DU8 428 aa18.67■□□□□ 0.58
USP39-209ENST00000458268 CCDC70Q6NSX1 233 aa18.67■□□□□ 0.58
USP39-209ENST00000458268 ESRP1Q6NXG1 681 aaKnown RBP18.67■□□□□ 0.58
USP39-209ENST00000458268 CCDC112Q8NEF3 446 aa18.67■□□□□ 0.58
USP39-209ENST00000458268 HTR3CQ8WXA8 447 aa18.67■□□□□ 0.58
USP39-209ENST00000458268 OR1E3Q8WZA6 343 aa18.67■□□□□ 0.58
USP39-209ENST00000458268 SCAMP4Q969E2 229 aa18.67■□□□□ 0.58
USP39-209ENST00000458268 AP2M1Q96CW1 435 aa18.67■□□□□ 0.58
USP39-209ENST00000458268 IMP4Q96G21 291 aaKnown RBP18.67■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms