RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP14.53□□□□□ -0.08
SDC1-204ENST00000429035 TRAFD1O14545 582 aaPredicted RBP14.53□□□□□ -0.08
SDC1-204ENST00000429035 MBD3O95983 291 aa14.53□□□□□ -0.08
SDC1-204ENST00000429035 CYP2A6P11509 494 aaPredicted RBP14.53□□□□□ -0.08
SDC1-204ENST00000429035 MYCLP1P12525 358 aaPredicted RBP14.53□□□□□ -0.08
SDC1-204ENST00000429035 GM2AP17900 193 aa14.53□□□□□ -0.08
SDC1-204ENST00000429035 AMPD1P23109 780 aa14.53□□□□□ -0.08
SDC1-204ENST00000429035 NFKBIAP25963 317 aa14.53□□□□□ -0.08
SDC1-204ENST00000429035 CCKBRP32239 447 aa14.53□□□□□ -0.08
SDC1-204ENST00000429035 GNPDA1P46926 289 aa14.53□□□□□ -0.08
SDC1-204ENST00000429035 DPYSQ14117 519 aa14.53□□□□□ -0.08
SDC1-204ENST00000429035 TSR1Q2NL82 804 aaKnown RBP14.53□□□□□ -0.08
SDC1-204ENST00000429035 PNCKQ6P2M8 343 aa14.53□□□□□ -0.08
SDC1-204ENST00000429035 TMCO3Q6UWJ1 677 aa14.53□□□□□ -0.08
SDC1-204ENST00000429035 FNIP1Q8TF40 1166 aa14.53□□□□□ -0.08
SDC1-204ENST00000429035 TRIM11Q96F44 468 aa14.53□□□□□ -0.08
SDC1-204ENST00000429035 NSMCE3Q96MG7 304 aa14.53□□□□□ -0.08
SDC1-204ENST00000429035 PSKH2Q96QS6 385 aa14.53□□□□□ -0.08
SDC1-204ENST00000429035 RTN4Q9NQC3 1192 aaKnown RBP14.53□□□□□ -0.08
SDC1-204ENST00000429035 ZNF462Q96JM2 2506 aa14.53□□□□□ -0.08
SDC1-204ENST00000429035 PRAMEF33A0A0G2JMD5 474 aa14.52□□□□□ -0.09
SDC1-204ENST00000429035 LRRC10BA6NIK2 292 aa14.52□□□□□ -0.09
SDC1-204ENST00000429035 RHPN2P1A8MT19 583 aa14.52□□□□□ -0.09
SDC1-204ENST00000429035 J3QKU1 62 aa14.52□□□□□ -0.09
SDC1-204ENST00000429035 PDE2AO00408 941 aaPredicted RBP14.52□□□□□ -0.09
SDC1-204ENST00000429035 DDX3XO00571 662 aaKnown RBP eCLIP14.52□□□□□ -0.092e-8■■□□□ 13.3
SDC1-204ENST00000429035 KALRNO60229 2985 aa14.52□□□□□ -0.09
SDC1-204ENST00000429035 PRAMEF10O60809 474 aa14.52□□□□□ -0.09
SDC1-204ENST00000429035 SOCS5O75159 536 aa14.52□□□□□ -0.09
SDC1-204ENST00000429035 SKILP12757 684 aa14.52□□□□□ -0.09
SDC1-204ENST00000429035 TCF4P15884 667 aa14.52□□□□□ -0.09
SDC1-204ENST00000429035 CTPS1P17812 591 aa14.52□□□□□ -0.09
SDC1-204ENST00000429035 AK4P27144 223 aaPredicted RBP14.52□□□□□ -0.09
SDC1-204ENST00000429035 GJC1P36383 396 aa14.52□□□□□ -0.09
SDC1-204ENST00000429035 ETV5P41161 510 aa14.52□□□□□ -0.09
SDC1-204ENST00000429035 SSR1P43307 286 aaKnown RBP14.52□□□□□ -0.09
SDC1-204ENST00000429035 ZNF135P52742 658 aaPredicted RBP14.52□□□□□ -0.09
SDC1-204ENST00000429035 NSUN2Q08J23 767 aaKnown RBP eCLIP14.52□□□□□ -0.09
SDC1-204ENST00000429035 ILF3Q12906 894 aaKnown RBP eCLIP14.52□□□□□ -0.09
SDC1-204ENST00000429035 TRAF2Q12933 501 aa14.52□□□□□ -0.09
SDC1-204ENST00000429035 HLTFQ14527 1009 aaKnown RBP eCLIP14.52□□□□□ -0.09
SDC1-204ENST00000429035 SLC30A9Q6PML9 568 aa14.52□□□□□ -0.09
SDC1-204ENST00000429035 USP53Q70EK8 1073 aa14.52□□□□□ -0.09
SDC1-204ENST00000429035 VASH2Q86V25 355 aa14.52□□□□□ -0.09
SDC1-204ENST00000429035 PSTKQ8IV42 348 aaKnown RBP14.52□□□□□ -0.09
SDC1-204ENST00000429035 LZTR1Q8N653 840 aa14.52□□□□□ -0.09
SDC1-204ENST00000429035 ZDHHC1Q8WTX9 485 aa14.52□□□□□ -0.09
SDC1-204ENST00000429035 WBP1Q96G27 269 aa14.52□□□□□ -0.09
SDC1-204ENST00000429035 ZNF599Q96NL3 588 aa14.52□□□□□ -0.09
SDC1-204ENST00000429035 NUDCD1Q96RS6 583 aa14.52□□□□□ -0.09
SDC1-204ENST00000429035 CMKLR1Q99788 373 aa14.52□□□□□ -0.09
SDC1-204ENST00000429035 GSDMCQ9BYG8 508 aa14.52□□□□□ -0.09
SDC1-204ENST00000429035 RDH14Q9HBH5 336 aa14.52□□□□□ -0.09
SDC1-204ENST00000429035 MRPL47Q9HD33 250 aaKnown RBP14.52□□□□□ -0.09
SDC1-204ENST00000429035 ETNK2Q9NVF9 386 aa14.52□□□□□ -0.09
SDC1-204ENST00000429035 AKAP7Q9P0M2 348 aaPredicted RBP14.52□□□□□ -0.09
SDC1-204ENST00000429035 APPL1Q9UKG1 709 aa14.52□□□□□ -0.09
SDC1-204ENST00000429035 PCDHGA7Q9Y5G6 932 aa14.52□□□□□ -0.09
SDC1-204ENST00000429035 TNFRSF10CO14798 259 aa14.51□□□□□ -0.09
SDC1-204ENST00000429035 HEXIM1O94992 359 aaKnown RBP14.51□□□□□ -0.09
SDC1-204ENST00000429035 LIPCP11150 499 aa14.51□□□□□ -0.09
SDC1-204ENST00000429035 CCNB1P14635 433 aa14.51□□□□□ -0.09
SDC1-204ENST00000429035 IL1R2P27930 398 aa14.51□□□□□ -0.09
SDC1-204ENST00000429035 ALDH4A1P30038 563 aa14.51□□□□□ -0.09
SDC1-204ENST00000429035 HSPA9P38646 679 aaKnown RBP14.51□□□□□ -0.09
SDC1-204ENST00000429035 ETV3P41162 512 aa14.51□□□□□ -0.09
SDC1-204ENST00000429035 ITKQ08881 620 aa14.51□□□□□ -0.09
SDC1-204ENST00000429035 KRT81Q14533 505 aa14.51□□□□□ -0.09
SDC1-204ENST00000429035 DPYSL2Q16555 572 aa14.51□□□□□ -0.09
SDC1-204ENST00000429035 MANEAQ5SRI9 462 aa14.51□□□□□ -0.09
SDC1-204ENST00000429035 USP45Q70EL2 814 aa14.51□□□□□ -0.09
SDC1-204ENST00000429035 PGBD5Q8N414 524 aa14.51□□□□□ -0.09
SDC1-204ENST00000429035 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP14.51□□□□□ -0.09
SDC1-204ENST00000429035 SNRNP27Q8WVK2 155 aaKnown RBP14.51□□□□□ -0.09
SDC1-204ENST00000429035 USP7Q93009 1102 aa14.51□□□□□ -0.09
SDC1-204ENST00000429035 DTD2Q96FN9 168 aa14.51□□□□□ -0.09
SDC1-204ENST00000429035 BTBD6Q96KE9 485 aa14.51□□□□□ -0.09
SDC1-204ENST00000429035 COQ10AQ96MF6 247 aa14.51□□□□□ -0.09
SDC1-204ENST00000429035 CSPG4P5Q96PW8 444 aa14.51□□□□□ -0.09
SDC1-204ENST00000429035 ARHGAP9Q9BRR9 750 aa14.51□□□□□ -0.09
SDC1-204ENST00000429035 NOD2Q9HC29 1040 aa14.51□□□□□ -0.09
SDC1-204ENST00000429035 NT5MQ9NPB1 228 aa14.51□□□□□ -0.09
SDC1-204ENST00000429035 FOXJ2Q9P0K8 574 aa14.51□□□□□ -0.09
SDC1-204ENST00000429035 SEPT10Q9P0V9 454 aa14.51□□□□□ -0.09
SDC1-204ENST00000429035 CD84Q9UIB8 345 aa14.51□□□□□ -0.09
SDC1-204ENST00000429035 SUFUQ9UMX1 484 aa14.51□□□□□ -0.09
SDC1-204ENST00000429035 TTLL3Q9Y4R7 772 aa14.51□□□□□ -0.09
SDC1-204ENST00000429035 A0A1W2PQ67 120 aa14.5□□□□□ -0.09
SDC1-204ENST00000429035 NPIPB15A6NHN6 443 aaPredicted RBP14.5□□□□□ -0.09
SDC1-204ENST00000429035 SMTNL1A8MU46 457 aa14.5□□□□□ -0.09
SDC1-204ENST00000429035 HTRA2O43464 458 aaPredicted RBP14.5□□□□□ -0.09
SDC1-204ENST00000429035 NUDT21O43809 227 aaKnown RBP14.5□□□□□ -0.09
SDC1-204ENST00000429035 SLC28A2O43868 658 aa14.5□□□□□ -0.09
SDC1-204ENST00000429035 HOXC4P09017 264 aaPredicted RBP14.5□□□□□ -0.09
SDC1-204ENST00000429035 MYBL1P10243 752 aa14.5□□□□□ -0.09
SDC1-204ENST00000429035 GZMAP12544 262 aa14.5□□□□□ -0.09
SDC1-204ENST00000429035 LHCGRP22888 699 aa14.5□□□□□ -0.09
SDC1-204ENST00000429035 SERPINB6P35237 376 aa14.5□□□□□ -0.09
SDC1-204ENST00000429035 TRIM23P36406 574 aa14.5□□□□□ -0.09
SDC1-204ENST00000429035 MMP13P45452 471 aa14.5□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms