RNA–Protein interactions for RNA: ENST00000425048.1

LINC01040-201, Transcript of long intergenic non-protein coding RNA 1040, humanhuman

TSL 2 BASIC

Gene LINC01040, Length 666 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01040-201ENST00000425048 NR1D1P20393 614 aa4.5□□□□□ -1.69
LINC01040-201ENST00000425048 SERPINB3P29508 390 aa4.5□□□□□ -1.69
LINC01040-201ENST00000425048 ADD2P35612 726 aa4.5□□□□□ -1.69
LINC01040-201ENST00000425048 LUMP51884 338 aaPredicted RBP4.5□□□□□ -1.69
LINC01040-201ENST00000425048 ACTR2P61160 394 aa4.5□□□□□ -1.69
LINC01040-201ENST00000425048 CHRNDQ07001 517 aa4.5□□□□□ -1.69
LINC01040-201ENST00000425048 STXBP5Q5T5C0 1151 aa4.5□□□□□ -1.69
LINC01040-201ENST00000425048 SFMBT2Q5VUG0 894 aa4.5□□□□□ -1.69
LINC01040-201ENST00000425048 ANKRD54Q6NXT1 300 aa4.5□□□□□ -1.69
LINC01040-201ENST00000425048 JMJD6Q6NYC1 403 aaPredicted RBP4.5□□□□□ -1.69
LINC01040-201ENST00000425048 STXBP4Q6ZWJ1 553 aa4.5□□□□□ -1.69
LINC01040-201ENST00000425048 MTSS1LQ765P7 747 aa4.5□□□□□ -1.69
LINC01040-201ENST00000425048 SH2D6Q7Z4S9 175 aa4.5□□□□□ -1.69
LINC01040-201ENST00000425048 FBXL8Q96CD0 374 aa4.5□□□□□ -1.69
LINC01040-201ENST00000425048 SIN3AQ96ST3 1273 aa4.5□□□□□ -1.69
LINC01040-201ENST00000425048 CD180Q99467 661 aa4.5□□□□□ -1.69
LINC01040-201ENST00000425048 SYT17Q9BSW7 474 aa4.5□□□□□ -1.69
LINC01040-201ENST00000425048 POLR3CQ9BUI4 534 aaPredicted RBP4.5□□□□□ -1.69
LINC01040-201ENST00000425048 EPHX3Q9H6B9 360 aa4.5□□□□□ -1.69
LINC01040-201ENST00000425048 MKKSQ9NPJ1 570 aaPredicted RBP4.5□□□□□ -1.69
LINC01040-201ENST00000425048 BABAM1Q9NWV8 329 aa4.5□□□□□ -1.69
LINC01040-201ENST00000425048 OGFRQ9NZT2 677 aa4.5□□□□□ -1.69
LINC01040-201ENST00000425048 KIF17Q9P2E2 1029 aa4.5□□□□□ -1.69
LINC01040-201ENST00000425048 CACNA1FO60840 1977 aa4.49□□□□□ -1.69
LINC01040-201ENST00000425048 PER2O15055 1255 aa4.49□□□□□ -1.69
LINC01040-201ENST00000425048 CRLF1O75462 422 aa4.49□□□□□ -1.69
LINC01040-201ENST00000425048 MMP2P08253 660 aa4.49□□□□□ -1.69
LINC01040-201ENST00000425048 G6PDP11413 515 aa4.49□□□□□ -1.69
LINC01040-201ENST00000425048 MYOD1P15172 320 aa4.49□□□□□ -1.69
LINC01040-201ENST00000425048 CHRNB4P30926 498 aa4.49□□□□□ -1.69
LINC01040-201ENST00000425048 DDIT3P35638 169 aa4.49□□□□□ -1.69
LINC01040-201ENST00000425048 EIF2S3P41091 472 aaKnown RBP4.49□□□□□ -1.69
LINC01040-201ENST00000425048 HNRNPH2P55795 449 aaKnown RBP4.49□□□□□ -1.69
LINC01040-201ENST00000425048 GAGE5Q13069 117 aa4.49□□□□□ -1.69
LINC01040-201ENST00000425048 GAGE6Q13070 117 aa4.49□□□□□ -1.69
LINC01040-201ENST00000425048 GTF2H2Q13888 395 aa4.49□□□□□ -1.69
LINC01040-201ENST00000425048 LPAL2Q16609 132 aa4.49□□□□□ -1.69
LINC01040-201ENST00000425048 GTF2H2CQ6P1K8 395 aa4.49□□□□□ -1.69
LINC01040-201ENST00000425048 ATF7IPQ6VMQ6 1270 aa4.49□□□□□ -1.69
LINC01040-201ENST00000425048 ASB18Q6ZVZ8 466 aa4.49□□□□□ -1.69
LINC01040-201ENST00000425048 MYLK4Q86YV6 388 aaPredicted RBP4.49□□□□□ -1.69
LINC01040-201ENST00000425048 SVIPQ8NHG7 77 aa4.49□□□□□ -1.69
LINC01040-201ENST00000425048 AFG1LQ8WV93 481 aa4.49□□□□□ -1.69
LINC01040-201ENST00000425048 ST6GAL2Q96JF0 529 aa4.49□□□□□ -1.69
LINC01040-201ENST00000425048 STN1Q9H668 368 aaKnown RBP4.49□□□□□ -1.69
LINC01040-201ENST00000425048 ESRP2Q9H6T0 727 aaKnown RBP4.49□□□□□ -1.69
LINC01040-201ENST00000425048 GRHPRQ9UBQ7 328 aa4.49□□□□□ -1.69
LINC01040-201ENST00000425048 DNAJC16Q9Y2G8 782 aa4.49□□□□□ -1.69
LINC01040-201ENST00000425048 STON1Q9Y6Q2 735 aa4.49□□□□□ -1.69
LINC01040-201ENST00000425048 RNF215Q9Y6U7 377 aa4.49□□□□□ -1.69
LINC01040-201ENST00000425048 SH2D7A6NKC9 451 aaPredicted RBP4.48□□□□□ -1.69
LINC01040-201ENST00000425048 SMIM1B2RUZ4 78 aa4.48□□□□□ -1.69
LINC01040-201ENST00000425048 PPM1GO15355 546 aaPredicted RBP4.48□□□□□ -1.69
LINC01040-201ENST00000425048 DDX5P17844 614 aaKnown RBP4.48□□□□□ -1.69
LINC01040-201ENST00000425048 AZU1P20160 251 aa4.48□□□□□ -1.69
LINC01040-201ENST00000425048 GRIK2Q13002 908 aa4.48□□□□□ -1.69
LINC01040-201ENST00000425048 FAM160B2Q86V87 743 aa4.48□□□□□ -1.69
LINC01040-201ENST00000425048 ASCL2Q99929 193 aa4.48□□□□□ -1.69
LINC01040-201ENST00000425048 UBXN6Q9BZV1 441 aa4.48□□□□□ -1.69
LINC01040-201ENST00000425048 DDX4Q9NQI0 724 aaKnown RBP4.48□□□□□ -1.69
LINC01040-201ENST00000425048 ZKSCAN7Q9P0L1 754 aaPredicted RBP4.48□□□□□ -1.69
LINC01040-201ENST00000425048 RRP7AQ9Y3A4 280 aaKnown RBP4.48□□□□□ -1.69
LINC01040-201ENST00000425048 FAM90A7PA6NKC0 464 aa4.47□□□□□ -1.69
LINC01040-201ENST00000425048 FAM90A22PA8MWA6 464 aa4.47□□□□□ -1.69
LINC01040-201ENST00000425048 FAM90A12PA8MX19 464 aa4.47□□□□□ -1.69
LINC01040-201ENST00000425048 FAM90A23PA8MXZ1 464 aa4.47□□□□□ -1.69
LINC01040-201ENST00000425048 HHLA1C9JL84 531 aa4.47□□□□□ -1.69
LINC01040-201ENST00000425048 CAVIN2O95810 425 aa4.47□□□□□ -1.69
LINC01040-201ENST00000425048 AGAP20933 346 aa4.47□□□□□ -1.69
LINC01040-201ENST00000425048 CORO1AP31146 461 aaKnown RBP4.47□□□□□ -1.69
LINC01040-201ENST00000425048 NAA25Q14CX7 972 aa4.47□□□□□ -1.69
LINC01040-201ENST00000425048 SIRPB2Q5JXA9 342 aa4.47□□□□□ -1.69
LINC01040-201ENST00000425048 NOXA1Q86UR1 476 aa4.47□□□□□ -1.69
LINC01040-201ENST00000425048 SPAG16Q8N0X2 631 aa4.47□□□□□ -1.69
LINC01040-201ENST00000425048 BEST2Q8NFU1 509 aa4.47□□□□□ -1.69
LINC01040-201ENST00000425048 LRR1Q96L50 414 aa4.47□□□□□ -1.69
LINC01040-201ENST00000425048 ZNF354BQ96LW1 612 aa4.47□□□□□ -1.69
LINC01040-201ENST00000425048 MTERF1Q99551 399 aaKnown RBP4.47□□□□□ -1.69
LINC01040-201ENST00000425048 UPF2Q9HAU5 1272 aaKnown RBP4.47□□□□□ -1.69
LINC01040-201ENST00000425048 ALKBH4Q9NXW9 302 aa4.47□□□□□ -1.69
LINC01040-201ENST00000425048 DDX52Q9Y2R4 599 aaKnown RBP eCLIP4.47□□□□□ -1.69
LINC01040-201ENST00000425048 OR2W1Q9Y3N9 320 aa4.47□□□□□ -1.69
LINC01040-201ENST00000425048 NR5A2O00482 541 aa4.46□□□□□ -1.7
LINC01040-201ENST00000425048 IGLV1-44P01699 117 aa4.46□□□□□ -1.7
LINC01040-201ENST00000425048 RXRAP19793 462 aa4.46□□□□□ -1.7
LINC01040-201ENST00000425048 DCTP40126 519 aa4.46□□□□□ -1.7
LINC01040-201ENST00000425048 ISL1P61371 349 aa4.46□□□□□ -1.7
LINC01040-201ENST00000425048 LMO4P61968 165 aa4.46□□□□□ -1.7
LINC01040-201ENST00000425048 GNB1P62873 340 aa4.46□□□□□ -1.7
LINC01040-201ENST00000425048 IRX1P78414 480 aaPredicted RBP4.46□□□□□ -1.7
LINC01040-201ENST00000425048 EIF2S3LQ2VIR3 472 aaKnown RBP4.46□□□□□ -1.7
LINC01040-201ENST00000425048 HSP90AB2PQ58FF8 381 aa4.46□□□□□ -1.7
LINC01040-201ENST00000425048 SGO1Q5FBB7 561 aa4.46□□□□□ -1.7
LINC01040-201ENST00000425048 SERTAD4-AS1Q5TG53 156 aa4.46□□□□□ -1.7
LINC01040-201ENST00000425048 CCSAPQ6IQ19 270 aaPredicted RBP4.46□□□□□ -1.7
LINC01040-201ENST00000425048 LRRC8EQ6NSJ5 796 aa4.46□□□□□ -1.7
LINC01040-201ENST00000425048 KCTD18Q6PI47 426 aaPredicted RBP4.46□□□□□ -1.7
LINC01040-201ENST00000425048 LINGO2Q7L985 606 aa4.46□□□□□ -1.7
LINC01040-201ENST00000425048 NOTCH2NLQ7Z3S9 236 aa4.46□□□□□ -1.7
LINC01040-201ENST00000425048 STPG4Q8N801 248 aa4.46□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 82 ms