RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 HGSNATQ68CP4 663 aa9.83□□□□□ -0.84
USP54-205ENST00000424265 POC5Q8NA72 575 aa9.83□□□□□ -0.84
USP54-205ENST00000424265 TTC17Q96AE7 1141 aa9.83□□□□□ -0.84
USP54-205ENST00000424265 SLC39A13Q96H72 371 aa9.83□□□□□ -0.84
USP54-205ENST00000424265 ABCG4Q9H172 646 aa9.83□□□□□ -0.84
USP54-205ENST00000424265 MAT2BQ9NZL9 334 aa9.83□□□□□ -0.84
USP54-205ENST00000424265 CPQQ9Y646 472 aa9.83□□□□□ -0.84
USP54-205ENST00000424265 M0R3G1 203 aa9.83□□□□□ -0.84
USP54-205ENST00000424265 AURKAO14965 403 aa9.83□□□□□ -0.84
USP54-205ENST00000424265 HOXC11O43248 304 aaPredicted RBP9.83□□□□□ -0.84
USP54-205ENST00000424265 MYH9P35579 1960 aaKnown RBP9.83□□□□□ -0.84
USP54-205ENST00000424265 NDUFV1P49821 464 aa9.83□□□□□ -0.84
USP54-205ENST00000424265 PLEKHG4Q58EX7 1191 aa9.83□□□□□ -0.84
USP54-205ENST00000424265 METTL11BQ5VVY1 283 aa9.83□□□□□ -0.84
USP54-205ENST00000424265 CCDC137Q6PK04 289 aaKnown RBP9.83□□□□□ -0.84
USP54-205ENST00000424265 OTOP2Q7RTS6 562 aa9.83□□□□□ -0.84
USP54-205ENST00000424265 ARMC8Q8IUR7 673 aa9.83□□□□□ -0.84
USP54-205ENST00000424265 RIN3Q8TB24 985 aa9.83□□□□□ -0.84
USP54-205ENST00000424265 RAD9AQ99638 391 aa9.83□□□□□ -0.84
USP54-205ENST00000424265 ALG13Q9NP73 1137 aaKnown RBP9.83□□□□□ -0.84
USP54-205ENST00000424265 ZNF224Q9NZL3 707 aa9.83□□□□□ -0.84
USP54-205ENST00000424265 NAALADL1Q9UQQ1 740 aa9.83□□□□□ -0.84
USP54-205ENST00000424265 KLHL20Q9Y2M5 609 aa9.83□□□□□ -0.84
USP54-205ENST00000424265 PIRO00625 290 aa9.83□□□□□ -0.84
USP54-205ENST00000424265 SNAP91O60641 907 aa9.83□□□□□ -0.84
USP54-205ENST00000424265 H6PDO95479 791 aa9.83□□□□□ -0.84
USP54-205ENST00000424265 ITIH2P19823 946 aa9.83□□□□□ -0.84
USP54-205ENST00000424265 FOXN2P32314 431 aa9.83□□□□□ -0.84
USP54-205ENST00000424265 HSD17B2P37059 387 aa9.83□□□□□ -0.84
USP54-205ENST00000424265 INCA1Q0VD86 236 aa9.83□□□□□ -0.84
USP54-205ENST00000424265 SLFN11Q7Z7L1 901 aa9.83□□□□□ -0.84
USP54-205ENST00000424265 GPR180Q86V85 440 aa9.83□□□□□ -0.84
USP54-205ENST00000424265 SLC22A16Q86VW1 577 aa9.83□□□□□ -0.84
USP54-205ENST00000424265 KIAA1958Q8N8K9 716 aa9.83□□□□□ -0.84
USP54-205ENST00000424265 RBM15BQ8NDT2 890 aaKnown RBP9.83□□□□□ -0.84
USP54-205ENST00000424265 MRPL45Q9BRJ2 306 aaKnown RBP9.83□□□□□ -0.84
USP54-205ENST00000424265 SP110Q9HB58 689 aa9.83□□□□□ -0.84
USP54-205ENST00000424265 MYH15Q9Y2K3 1946 aa9.83□□□□□ -0.84
USP54-205ENST00000424265 A0A1W2PPW3 197 aa9.83□□□□□ -0.84
USP54-205ENST00000424265 PRSS44E7EML9 344 aa9.83□□□□□ -0.84
USP54-205ENST00000424265 VNN1O95497 513 aa9.83□□□□□ -0.84
USP54-205ENST00000424265 XPAP23025 273 aaPredicted RBP9.83□□□□□ -0.84
USP54-205ENST00000424265 HOXA11P31270 313 aaPredicted RBP9.83□□□□□ -0.84
USP54-205ENST00000424265 PRKAR1BP31321 381 aa9.83□□□□□ -0.84
USP54-205ENST00000424265 HTR7P34969 479 aa9.83□□□□□ -0.84
USP54-205ENST00000424265 Q3ZCU0 254 aa9.83□□□□□ -0.84
USP54-205ENST00000424265 AASDHQ4L235 1098 aaPredicted RBP9.83□□□□□ -0.84
USP54-205ENST00000424265 MON1AQ86VX9 555 aa9.83□□□□□ -0.84
USP54-205ENST00000424265 CAMK1DQ8IU85 385 aa9.83□□□□□ -0.84
USP54-205ENST00000424265 PHC2Q8IXK0 858 aa9.83□□□□□ -0.84
USP54-205ENST00000424265 PQLC1Q8N2U9 271 aa9.83□□□□□ -0.84
USP54-205ENST00000424265 RXFP2Q8WXD0 754 aa9.83□□□□□ -0.84
USP54-205ENST00000424265 GMEB2Q9UKD1 530 aa9.83□□□□□ -0.84
USP54-205ENST00000424265 FAM50BQ9Y247 325 aa9.83□□□□□ -0.84
USP54-205ENST00000424265 ACTL7BQ9Y614 415 aa9.83□□□□□ -0.84
USP54-205ENST00000424265 C9IYK1 514 aa9.82□□□□□ -0.84
USP54-205ENST00000424265 F5H5T6 163 aa9.82□□□□□ -0.84
USP54-205ENST00000424265 RGS13O14921 159 aa9.82□□□□□ -0.84
USP54-205ENST00000424265 ZNF263O14978 683 aa9.82□□□□□ -0.84
USP54-205ENST00000424265 DNAJB5O75953 348 aa9.82□□□□□ -0.84
USP54-205ENST00000424265 NOL4O94818 638 aa9.82□□□□□ -0.84
USP54-205ENST00000424265 CST3P01034 146 aaPredicted RBP9.82□□□□□ -0.84
USP54-205ENST00000424265 MBL2P11226 248 aaPredicted RBP9.82□□□□□ -0.84
USP54-205ENST00000424265 NELFEP18615 380 aaKnown RBP9.82□□□□□ -0.84
USP54-205ENST00000424265 AVPR1AP37288 418 aa9.82□□□□□ -0.84
USP54-205ENST00000424265 ASPAP45381 313 aa9.82□□□□□ -0.84
USP54-205ENST00000424265 COPAP53621 1224 aa9.82□□□□□ -0.84
USP54-205ENST00000424265 BNC1Q01954 994 aa9.82□□□□□ -0.84
USP54-205ENST00000424265 ZNF33BQ06732 778 aa9.82□□□□□ -0.84
USP54-205ENST00000424265 NEDD8Q15843 81 aa9.82□□□□□ -0.84
USP54-205ENST00000424265 IGFN1Q86VF2 1251 aa9.82□□□□□ -0.84
USP54-205ENST00000424265 CHSY1Q86X52 802 aa9.82□□□□□ -0.84
USP54-205ENST00000424265 CRLF3Q8IUI8 442 aa9.82□□□□□ -0.84
USP54-205ENST00000424265 CADM2Q8N3J6 435 aa9.82□□□□□ -0.84
USP54-205ENST00000424265 KAT5Q92993 513 aa9.82□□□□□ -0.84
USP54-205ENST00000424265 GOLPH3Q9H4A6 298 aa9.82□□□□□ -0.84
USP54-205ENST00000424265 FBXO6Q9NRD1 293 aaPredicted RBP9.82□□□□□ -0.84
USP54-205ENST00000424265 CXCL14O95715 111 aa9.82□□□□□ -0.84
USP54-205ENST00000424265 MOCS2O96007 188 aaPredicted RBP9.82□□□□□ -0.84
USP54-205ENST00000424265 RB1P06400 928 aa9.82□□□□□ -0.84
USP54-205ENST00000424265 KITP10721 976 aa9.82□□□□□ -0.84
USP54-205ENST00000424265 BRCC3P46736 316 aa9.82□□□□□ -0.84
USP54-205ENST00000424265 DYNLT1P63172 113 aa9.82□□□□□ -0.84
USP54-205ENST00000424265 DDX59Q5T1V6 619 aaKnown RBP eCLIP9.82□□□□□ -0.84
USP54-205ENST00000424265 SLC9A4Q6AI14 798 aa9.82□□□□□ -0.84
USP54-205ENST00000424265 KCNT2Q6UVM3 1135 aa9.82□□□□□ -0.84
USP54-205ENST00000424265 TBRG4Q969Z0 631 aaKnown RBP eCLIP9.82□□□□□ -0.84
USP54-205ENST00000424265 C17orf62Q9BQA9 187 aa9.82□□□□□ -0.84
USP54-205ENST00000424265 NTN4Q9HB63 628 aa9.82□□□□□ -0.84
USP54-205ENST00000424265 THG1LQ9NWX6 298 aaKnown RBP9.82□□□□□ -0.84
USP54-205ENST00000424265 COPG2Q9UBF2 871 aa9.82□□□□□ -0.84
USP54-205ENST00000424265 PTPRJQ12913 1337 aa9.82□□□□□ -0.84
USP54-205ENST00000424265 FGFR1P11362 822 aa9.82□□□□□ -0.84
USP54-205ENST00000424265 CREB1P16220 341 aa9.82□□□□□ -0.84
USP54-205ENST00000424265 MAPK12P53778 367 aa9.82□□□□□ -0.84
USP54-205ENST00000424265 PUDPQ08623 228 aa9.82□□□□□ -0.84
USP54-205ENST00000424265 C1orf53Q5VUE5 145 aa9.82□□□□□ -0.84
USP54-205ENST00000424265 ZNF544Q6NX49 715 aa9.82□□□□□ -0.84
USP54-205ENST00000424265 FBXL19Q6PCT2 694 aa9.82□□□□□ -0.84
USP54-205ENST00000424265 PIGZQ86VD9 579 aa9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms