RNA–Protein interactions for RNA: ENST00000423636.6

PTPRN-204, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene PTPRN, Length 3,313 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-204ENST00000423636 UGT1A1P22309 533 aa11.94□□□□□ -0.5
PTPRN-204ENST00000423636 UGT1A4P22310 534 aa11.94□□□□□ -0.5
PTPRN-204ENST00000423636 UGT1A3P35503 534 aa11.94□□□□□ -0.5
PTPRN-204ENST00000423636 UGT1A5P35504 534 aa11.94□□□□□ -0.5
PTPRN-204ENST00000423636 MAGEA12P43365 314 aa11.94□□□□□ -0.5
PTPRN-204ENST00000423636 CDK7P50613 346 aa11.94□□□□□ -0.5
PTPRN-204ENST00000423636 AQP4P55087 323 aa11.94□□□□□ -0.5
PTPRN-204ENST00000423636 GPR17Q13304 367 aa11.94□□□□□ -0.5
PTPRN-204ENST00000423636 PTPRNQ16849 979 aa11.94□□□□□ -0.5
PTPRN-204ENST00000423636 INSCQ1MX18 579 aa11.94□□□□□ -0.5
PTPRN-204ENST00000423636 KIF19Q2TAC6 998 aa11.94□□□□□ -0.5
PTPRN-204ENST00000423636 TRIM60Q495X7 471 aa11.94□□□□□ -0.5
PTPRN-204ENST00000423636 SPATA24Q86W54 205 aa11.94□□□□□ -0.5
PTPRN-204ENST00000423636 UMODL1-AS1Q8N2C9 162 aa11.94□□□□□ -0.5
PTPRN-204ENST00000423636 LZTR1Q8N653 840 aa11.94□□□□□ -0.5
PTPRN-204ENST00000423636 SREK1Q8WXA9 508 aaKnown RBP11.94□□□□□ -0.5
PTPRN-204ENST00000423636 GPR21Q99679 349 aa11.94□□□□□ -0.5
PTPRN-204ENST00000423636 CLSTN3Q9BQT9 956 aa11.94□□□□□ -0.5
PTPRN-204ENST00000423636 VPS28Q9UK41 221 aa11.94□□□□□ -0.5
PTPRN-204ENST00000423636 A0A1W2PQ67 120 aa11.94□□□□□ -0.5
PTPRN-204ENST00000423636 KIF3CO14782 793 aa11.94□□□□□ -0.5
PTPRN-204ENST00000423636 MAP3K7O43318 606 aa11.94□□□□□ -0.5
PTPRN-204ENST00000423636 SERPINF2P08697 491 aa11.94□□□□□ -0.5
PTPRN-204ENST00000423636 HOXD9P28356 352 aaPredicted RBP11.94□□□□□ -0.5
PTPRN-204ENST00000423636 OXCT1P55809 520 aa11.94□□□□□ -0.5
PTPRN-204ENST00000423636 CYLC2Q14093 348 aaPredicted RBP11.94□□□□□ -0.5
PTPRN-204ENST00000423636 GRB7Q14451 532 aa11.94□□□□□ -0.5
PTPRN-204ENST00000423636 ZNF697Q5TEC3 545 aa11.94□□□□□ -0.5
PTPRN-204ENST00000423636 UGT3A1Q6NUS8 523 aa11.94□□□□□ -0.5
PTPRN-204ENST00000423636 ACAD11Q709F0 780 aa11.94□□□□□ -0.5
PTPRN-204ENST00000423636 MAGEC3Q8TD91 643 aa11.94□□□□□ -0.5
PTPRN-204ENST00000423636 CMTM5Q96DZ9 223 aa11.94□□□□□ -0.5
PTPRN-204ENST00000423636 C8orf48Q96LL4 319 aa11.94□□□□□ -0.5
PTPRN-204ENST00000423636 TSPAN18Q96SJ8 248 aa11.94□□□□□ -0.5
PTPRN-204ENST00000423636 UBE2OQ9C0C9 1292 aaKnown RBP11.94□□□□□ -0.5
PTPRN-204ENST00000423636 AGO1Q9UL18 857 aaKnown RBP11.94□□□□□ -0.5
PTPRN-204ENST00000423636 SDK1Q7Z5N4 2213 aa11.94□□□□□ -0.5
PTPRN-204ENST00000423636 ACSL4O60488 711 aa11.93□□□□□ -0.5
PTPRN-204ENST00000423636 CABYRO75952 493 aa11.93□□□□□ -0.5
PTPRN-204ENST00000423636 SRP72O76094 671 aaKnown RBP11.93□□□□□ -0.5
PTPRN-204ENST00000423636 SKIP12755 728 aa11.93□□□□□ -0.5
PTPRN-204ENST00000423636 ACTR3P61158 418 aa11.93□□□□□ -0.5
PTPRN-204ENST00000423636 SH3BP2P78314 561 aa11.93□□□□□ -0.5
PTPRN-204ENST00000423636 FUT11Q495W5 492 aa11.93□□□□□ -0.5
PTPRN-204ENST00000423636 FAM151BQ6UXP7 276 aa11.93□□□□□ -0.5
PTPRN-204ENST00000423636 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP11.93□□□□□ -0.5
PTPRN-204ENST00000423636 HS6ST3Q8IZP7 471 aa11.93□□□□□ -0.5
PTPRN-204ENST00000423636 MCMBPQ9BTE3 642 aa11.93□□□□□ -0.5
PTPRN-204ENST00000423636 AFF4Q9UHB7 1163 aaKnown RBP11.93□□□□□ -0.5
PTPRN-204ENST00000423636 EGFL7Q9UHF1 273 aa11.93□□□□□ -0.5
PTPRN-204ENST00000423636 EVLQ9UI08 416 aaPredicted RBP11.93□□□□□ -0.5
PTPRN-204ENST00000423636 ZNF840PA6NDX5 716 aa11.93□□□□□ -0.5
PTPRN-204ENST00000423636 TARM1B6A8C7 271 aa11.93□□□□□ -0.5
PTPRN-204ENST00000423636 STC2O76061 302 aa11.93□□□□□ -0.5
PTPRN-204ENST00000423636 LTA4HP09960 611 aaKnown RBP11.93□□□□□ -0.5
PTPRN-204ENST00000423636 VEGFBP49765 207 aa11.93□□□□□ -0.5
PTPRN-204ENST00000423636 PSEN1P49768 467 aa11.93□□□□□ -0.5
PTPRN-204ENST00000423636 CEACAM7Q14002 265 aa11.93□□□□□ -0.5
PTPRN-204ENST00000423636 MSANTD2Q6P1R3 559 aa11.93□□□□□ -0.5
PTPRN-204ENST00000423636 RFLNAQ6ZTI6 216 aa11.93□□□□□ -0.5
PTPRN-204ENST00000423636 ISCA2Q86U28 154 aa11.93□□□□□ -0.5
PTPRN-204ENST00000423636 FAM126BQ8IXS8 530 aa11.93□□□□□ -0.5
PTPRN-204ENST00000423636 APCDD1Q8J025 514 aa11.93□□□□□ -0.5
PTPRN-204ENST00000423636 ZNF366Q8N895 744 aa11.93□□□□□ -0.5
PTPRN-204ENST00000423636 BHLHE22Q8NFJ8 381 aaPredicted RBP11.93□□□□□ -0.5
PTPRN-204ENST00000423636 CDKN2AIPNLQ96HQ2 116 aa11.93□□□□□ -0.5
PTPRN-204ENST00000423636 BOCQ9BWV1 1114 aa11.93□□□□□ -0.5
PTPRN-204ENST00000423636 ZDHHC4Q9NPG8 344 aa11.93□□□□□ -0.5
PTPRN-204ENST00000423636 SCUBE2Q9NQ36 999 aa11.93□□□□□ -0.5
PTPRN-204ENST00000423636 DNAJC28Q9NX36 388 aa11.93□□□□□ -0.5
PTPRN-204ENST00000423636 UBA2Q9UBT2 640 aaPredicted RBP11.93□□□□□ -0.5
PTPRN-204ENST00000423636 DNMT3LQ9UJW3 386 aa11.93□□□□□ -0.5
PTPRN-204ENST00000423636 ARHGAP26Q9UNA1 814 aa11.93□□□□□ -0.5
PTPRN-204ENST00000423636 BTN3A1O00481 513 aa11.93□□□□□ -0.5
PTPRN-204ENST00000423636 SDHDO14521 159 aa11.93□□□□□ -0.5
PTPRN-204ENST00000423636 IPO13O94829 963 aaKnown RBP11.93□□□□□ -0.5
PTPRN-204ENST00000423636 ITGB8P26012 769 aa11.93□□□□□ -0.5
PTPRN-204ENST00000423636 STK19P49842 368 aaPredicted RBP11.93□□□□□ -0.5
PTPRN-204ENST00000423636 NRF1Q16656 503 aa11.93□□□□□ -0.5
PTPRN-204ENST00000423636 UGP2Q16851 508 aa11.93□□□□□ -0.5
PTPRN-204ENST00000423636 TSNAXIP1Q2TAA8 658 aa11.93□□□□□ -0.5
PTPRN-204ENST00000423636 SGO1Q5FBB7 561 aa11.93□□□□□ -0.5
PTPRN-204ENST00000423636 TECRLQ5HYJ1 363 aa11.93□□□□□ -0.5
PTPRN-204ENST00000423636 ARHGAP24Q8N264 748 aa11.93□□□□□ -0.5
PTPRN-204ENST00000423636 PPFIBP2Q8ND30 876 aa11.93□□□□□ -0.5
PTPRN-204ENST00000423636 OR4L1Q8NH43 312 aa11.93□□□□□ -0.5
PTPRN-204ENST00000423636 SEPT8Q92599 483 aa11.93□□□□□ -0.5
PTPRN-204ENST00000423636 DOCK4Q8N1I0 1966 aa11.92□□□□□ -0.5
PTPRN-204ENST00000423636 PTPRDP23468 1912 aa11.92□□□□□ -0.5
PTPRN-204ENST00000423636 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP11.92□□□□□ -0.5
PTPRN-204ENST00000423636 SH3BGRLO75368 114 aa11.92□□□□□ -0.5
PTPRN-204ENST00000423636 GDF5P43026 501 aa11.92□□□□□ -0.5
PTPRN-204ENST00000423636 FAM189BP81408 668 aa11.92□□□□□ -0.5
PTPRN-204ENST00000423636 TIAL1Q01085 375 aaKnown RBP eCLIP11.92□□□□□ -0.5
PTPRN-204ENST00000423636 ZNF177Q13360 481 aaPredicted RBP11.92□□□□□ -0.5
PTPRN-204ENST00000423636 MSLNQ13421 630 aaPredicted RBP11.92□□□□□ -0.5
PTPRN-204ENST00000423636 VPS26BQ4G0F5 336 aa11.92□□□□□ -0.5
PTPRN-204ENST00000423636 SMYD5Q6GMV2 418 aa11.92□□□□□ -0.5
PTPRN-204ENST00000423636 KIAA0930Q6ICG6 404 aaPredicted RBP11.92□□□□□ -0.5
PTPRN-204ENST00000423636 RPAINQ86UA6 219 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms