RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 RPL34P49207 117 aaKnown RBP10.72□□□□□ -0.69
USP54-204ENST00000422491 PITX1P78337 314 aaPredicted RBP10.72□□□□□ -0.69
USP54-204ENST00000422491 RBP5P82980 135 aa10.72□□□□□ -0.69
USP54-204ENST00000422491 TMEM132DQ14C87 1099 aa10.72□□□□□ -0.69
USP54-204ENST00000422491 SKIV2LQ15477 1246 aaKnown RBP10.72□□□□□ -0.69
USP54-204ENST00000422491 INAQ16352 499 aa10.72□□□□□ -0.69
USP54-204ENST00000422491 CTF1Q16619 201 aa10.72□□□□□ -0.69
USP54-204ENST00000422491 PGS1Q32NB8 556 aa10.72□□□□□ -0.69
USP54-204ENST00000422491 FAM160B1Q5W0V3 765 aa10.72□□□□□ -0.69
USP54-204ENST00000422491 ZNF280DQ6N043 979 aa10.72□□□□□ -0.69
USP54-204ENST00000422491 PLEKHG7Q6ZR37 379 aa10.72□□□□□ -0.69
USP54-204ENST00000422491 PTRH1Q86Y79 214 aaKnown RBP10.72□□□□□ -0.69
USP54-204ENST00000422491 SPNS2Q8IVW8 549 aa10.72□□□□□ -0.69
USP54-204ENST00000422491 DNERQ8NFT8 737 aa10.72□□□□□ -0.69
USP54-204ENST00000422491 SLC22A17Q8WUG5 538 aa10.72□□□□□ -0.69
USP54-204ENST00000422491 LRRC58Q96CX6 371 aa10.72□□□□□ -0.69
USP54-204ENST00000422491 OTUD5Q96G74 571 aa10.72□□□□□ -0.69
USP54-204ENST00000422491 TRIM8Q9BZR9 551 aa10.72□□□□□ -0.69
USP54-204ENST00000422491 GSTO2Q9H4Y5 243 aa10.72□□□□□ -0.69
USP54-204ENST00000422491 A0A0G2JMZ2 1700 aa10.72□□□□□ -0.69
USP54-204ENST00000422491 LRRC37A2A6NM11 1700 aa10.72□□□□□ -0.69
USP54-204ENST00000422491 ARNTP27540 789 aa10.71□□□□□ -0.69
USP54-204ENST00000422491 MATKP42679 507 aa10.71□□□□□ -0.69
USP54-204ENST00000422491 SULT1E1P49888 294 aa10.71□□□□□ -0.69
USP54-204ENST00000422491 TKTL1P51854 596 aa10.71□□□□□ -0.69
USP54-204ENST00000422491 KPNA2P52292 529 aaKnown RBP10.71□□□□□ -0.69
USP54-204ENST00000422491 OAZ1P54368 228 aa10.71□□□□□ -0.69
USP54-204ENST00000422491 CDH17Q12864 832 aa10.71□□□□□ -0.69
USP54-204ENST00000422491 TMEM132BQ14DG7 1078 aa10.71□□□□□ -0.69
USP54-204ENST00000422491 NDUFA5Q16718 116 aa10.71□□□□□ -0.69
USP54-204ENST00000422491 FAM83EQ2M2I3 478 aa10.71□□□□□ -0.69
USP54-204ENST00000422491 DPY19L1Q2PZI1 675 aa10.71□□□□□ -0.69
USP54-204ENST00000422491 SLC25A52Q3SY17 297 aa10.71□□□□□ -0.69
USP54-204ENST00000422491 SPATS1Q496A3 300 aa10.71□□□□□ -0.69
USP54-204ENST00000422491 RBM48Q5RL73 367 aaKnown RBP10.71□□□□□ -0.69
USP54-204ENST00000422491 SMG8Q8ND04 991 aaKnown RBP10.71□□□□□ -0.69
USP54-204ENST00000422491 S100ZQ8WXG8 99 aa10.71□□□□□ -0.69
USP54-204ENST00000422491 TRIB2Q92519 343 aa10.71□□□□□ -0.69
USP54-204ENST00000422491 CCDC126Q96EE4 140 aa10.71□□□□□ -0.69
USP54-204ENST00000422491 C19orf60Q96EN9 201 aa10.71□□□□□ -0.69
USP54-204ENST00000422491 C8orf37Q96NL8 207 aa10.71□□□□□ -0.69
USP54-204ENST00000422491 MUC13Q9H3R2 512 aa10.71□□□□□ -0.69
USP54-204ENST00000422491 RMND5AQ9H871 391 aa10.71□□□□□ -0.69
USP54-204ENST00000422491 SPON1Q9HCB6 807 aa10.71□□□□□ -0.69
USP54-204ENST00000422491 ANAPC2Q9UJX6 822 aa10.71□□□□□ -0.69
USP54-204ENST00000422491 IFT52Q9Y366 437 aa10.71□□□□□ -0.69
USP54-204ENST00000422491 PCDHGA11Q9Y5H2 935 aa10.71□□□□□ -0.69
USP54-204ENST00000422491 FNDC1Q4ZHG4 1894 aaPredicted RBP10.71□□□□□ -0.69
USP54-204ENST00000422491 NRCAMQ92823 1304 aa10.71□□□□□ -0.69
USP54-204ENST00000422491 AXIN1O15169 862 aa10.71□□□□□ -0.69
USP54-204ENST00000422491 MT-ND1P03886 318 aa10.71□□□□□ -0.69
USP54-204ENST00000422491 TCEA1P23193 301 aaKnown RBP10.71□□□□□ -0.69
USP54-204ENST00000422491 GSK3BP49841 420 aa10.71□□□□□ -0.69
USP54-204ENST00000422491 PLK1P53350 603 aa10.71□□□□□ -0.69
USP54-204ENST00000422491 TPTEP56180 551 aa10.71□□□□□ -0.69
USP54-204ENST00000422491 EN1Q05925 392 aaPredicted RBP10.71□□□□□ -0.69
USP54-204ENST00000422491 CSHL1Q14406 222 aa10.71□□□□□ -0.69
USP54-204ENST00000422491 MAPRE1Q15691 268 aaKnown RBP10.71□□□□□ -0.69
USP54-204ENST00000422491 KIF19Q2TAC6 998 aa10.71□□□□□ -0.69
USP54-204ENST00000422491 ARL13BQ3SXY8 428 aa10.71□□□□□ -0.69
USP54-204ENST00000422491 ZIK1Q3SY52 487 aaPredicted RBP10.71□□□□□ -0.69
USP54-204ENST00000422491 BTBD8Q5XKL5 378 aa10.71□□□□□ -0.69
USP54-204ENST00000422491 DEFB106AQ8N104 65 aa10.71□□□□□ -0.69
USP54-204ENST00000422491 MUL1Q969V5 352 aa10.71□□□□□ -0.69
USP54-204ENST00000422491 TMEM125Q96AQ2 219 aa10.71□□□□□ -0.69
USP54-204ENST00000422491 ELMO2Q96JJ3 720 aa10.71□□□□□ -0.69
USP54-204ENST00000422491 ING2Q9H160 280 aa10.71□□□□□ -0.69
USP54-204ENST00000422491 ACAD9Q9H845 621 aa10.71□□□□□ -0.69
USP54-204ENST00000422491 AKTIPQ9H8T0 292 aa10.71□□□□□ -0.69
USP54-204ENST00000422491 SLC52A3Q9NQ40 469 aa10.71□□□□□ -0.69
USP54-204ENST00000422491 DPP3Q9NY33 737 aa10.71□□□□□ -0.69
USP54-204ENST00000422491 UBP1Q9NZI7 540 aa10.71□□□□□ -0.69
USP54-204ENST00000422491 KLQ9UEF7 1012 aa10.71□□□□□ -0.69
USP54-204ENST00000422491 WARS2Q9UGM6 360 aaKnown RBP10.71□□□□□ -0.69
USP54-204ENST00000422491 SCAF8Q9UPN6 1271 aaKnown RBP10.71□□□□□ -0.69
USP54-204ENST00000422491 A8MU76 341 aa10.71□□□□□ -0.7
USP54-204ENST00000422491 C9JVG2 144 aa10.71□□□□□ -0.7
USP54-204ENST00000422491 EEF2KO00418 725 aaKnown RBP10.71□□□□□ -0.7
USP54-204ENST00000422491 ANGPT2O15123 496 aa10.71□□□□□ -0.7
USP54-204ENST00000422491 XYLBO75191 536 aa10.71□□□□□ -0.7
USP54-204ENST00000422491 UMPSP11172 480 aa10.71□□□□□ -0.7
USP54-204ENST00000422491 NCK1P16333 377 aa10.71□□□□□ -0.7
USP54-204ENST00000422491 IL7RP16871 459 aa10.71□□□□□ -0.7
USP54-204ENST00000422491 SLC1A2P43004 574 aa10.71□□□□□ -0.7
USP54-204ENST00000422491 ARSFP54793 590 aa10.71□□□□□ -0.7
USP54-204ENST00000422491 FOXM1Q08050 763 aa10.71□□□□□ -0.7
USP54-204ENST00000422491 TIGD2Q4W5G0 525 aa10.71□□□□□ -0.7
USP54-204ENST00000422491 ARHGAP17Q68EM7 881 aa10.71□□□□□ -0.7
USP54-204ENST00000422491 BNIPLQ7Z465 357 aa10.71□□□□□ -0.7
USP54-204ENST00000422491 NGLY1Q96IV0 654 aa10.71□□□□□ -0.7
USP54-204ENST00000422491 FAM167AQ96KS9 214 aa10.71□□□□□ -0.7
USP54-204ENST00000422491 ALG2Q9H553 416 aa10.71□□□□□ -0.7
USP54-204ENST00000422491 NTN4Q9HB63 628 aa10.71□□□□□ -0.7
USP54-204ENST00000422491 CDHR5Q9HBB8 845 aa10.71□□□□□ -0.7
USP54-204ENST00000422491 CHST12Q9NRB3 414 aa10.71□□□□□ -0.7
USP54-204ENST00000422491 THG1LQ9NWX6 298 aaKnown RBP10.71□□□□□ -0.7
USP54-204ENST00000422491 ADAMTS5Q9UNA0 930 aa10.71□□□□□ -0.7
USP54-204ENST00000422491 EP400Q96L91 3159 aa10.71□□□□□ -0.7
USP54-204ENST00000422491 FAM72CH0Y354 149 aa10.7□□□□□ -0.7
USP54-204ENST00000422491 UPK1AO00322 258 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms