RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 CCR2P41597 374 aa14.87□□□□□ -0.03
USP4-203ENST00000415188 RPL14P50914 215 aaKnown RBP14.87□□□□□ -0.03
USP4-203ENST00000415188 WNT3AP56704 352 aa14.87□□□□□ -0.03
USP4-203ENST00000415188 DNAJB13P59910 316 aa14.87□□□□□ -0.03
USP4-203ENST00000415188 BTKQ06187 659 aa14.87□□□□□ -0.03
USP4-203ENST00000415188 TWF1Q12792 350 aa14.87□□□□□ -0.03
USP4-203ENST00000415188 PRSS36Q5K4E3 855 aa14.87□□□□□ -0.03
USP4-203ENST00000415188 TMCO4Q5TGY1 634 aa14.87□□□□□ -0.03
USP4-203ENST00000415188 NAPRTQ6XQN6 538 aa14.87□□□□□ -0.03
USP4-203ENST00000415188 LRRC74BQ6ZQY2 392 aa14.87□□□□□ -0.03
USP4-203ENST00000415188 ADGRG6Q86SQ4 1221 aa14.87□□□□□ -0.03
USP4-203ENST00000415188 MYLK4Q86YV6 388 aaPredicted RBP14.87□□□□□ -0.03
USP4-203ENST00000415188 HS6ST3Q8IZP7 471 aa14.87□□□□□ -0.03
USP4-203ENST00000415188 TEX26Q8N6G2 289 aa14.87□□□□□ -0.03
USP4-203ENST00000415188 ZNF781Q8N8C0 355 aa14.87□□□□□ -0.03
USP4-203ENST00000415188 JADE3Q92613 823 aa14.87□□□□□ -0.03
USP4-203ENST00000415188 TSPAN17Q96FV3 270 aa14.87□□□□□ -0.03
USP4-203ENST00000415188 SCYL1Q96KG9 808 aa14.87□□□□□ -0.03
USP4-203ENST00000415188 CNDP1Q96KN2 507 aa14.87□□□□□ -0.03
USP4-203ENST00000415188 OXCT2Q9BYC2 517 aaPredicted RBP14.87□□□□□ -0.03
USP4-203ENST00000415188 PLA2G2FQ9BZM2 168 aa14.87□□□□□ -0.03
USP4-203ENST00000415188 FOXQ1Q9C009 403 aa14.87□□□□□ -0.03
USP4-203ENST00000415188 CXorf56Q9H5V9 222 aa14.87□□□□□ -0.03
USP4-203ENST00000415188 RETREG1Q9H6L5 497 aa14.87□□□□□ -0.03
USP4-203ENST00000415188 NOL6Q9H6R4 1146 aaKnown RBP14.87□□□□□ -0.03
USP4-203ENST00000415188 COG4Q9H9E3 785 aa14.87□□□□□ -0.03
USP4-203ENST00000415188 GEMIN8Q9NWZ8 242 aaKnown RBP14.87□□□□□ -0.03
USP4-203ENST00000415188 FBXO5Q9UKT4 447 aa14.87□□□□□ -0.03
USP4-203ENST00000415188 RUVBL2Q9Y230 463 aaKnown RBP14.87□□□□□ -0.03
USP4-203ENST00000415188 GOLGA8QA0A0J9YX86 632 aa14.86□□□□□ -0.03
USP4-203ENST00000415188 GOLGA8OA6NCC3 632 aa14.86□□□□□ -0.03
USP4-203ENST00000415188 TARM1B6A8C7 271 aa14.86□□□□□ -0.03
USP4-203ENST00000415188 GOLGA8NF8WBI6 632 aa14.86□□□□□ -0.03
USP4-203ENST00000415188 PMPCBO75439 489 aa14.86□□□□□ -0.03
USP4-203ENST00000415188 PEX11BO96011 259 aa14.86□□□□□ -0.03
USP4-203ENST00000415188 GLDCP23378 1020 aa14.86□□□□□ -0.03
USP4-203ENST00000415188 YWHAQP27348 245 aa14.86□□□□□ -0.03
USP4-203ENST00000415188 GABRB3P28472 473 aa14.86□□□□□ -0.03
USP4-203ENST00000415188 ABCG1P45844 678 aa14.86□□□□□ -0.03
USP4-203ENST00000415188 PGFP49763 221 aa14.86□□□□□ -0.03
USP4-203ENST00000415188 SERPINH1P50454 418 aaKnown RBP14.86□□□□□ -0.03
USP4-203ENST00000415188 KPNA1P52294 538 aaPredicted RBP14.86□□□□□ -0.03
USP4-203ENST00000415188 AP2B1P63010 937 aa14.86□□□□□ -0.03
USP4-203ENST00000415188 RING1Q06587 406 aa14.86□□□□□ -0.03
USP4-203ENST00000415188 ANGPT1Q15389 498 aa14.86□□□□□ -0.03
USP4-203ENST00000415188 MUM1Q2TAK8 710 aa14.86□□□□□ -0.03
USP4-203ENST00000415188 MS4A13Q5J8X5 152 aa14.86□□□□□ -0.03
USP4-203ENST00000415188 SNX30Q5VWJ9 437 aa14.86□□□□□ -0.03
USP4-203ENST00000415188 SEL1L3Q68CR1 1132 aa14.86□□□□□ -0.03
USP4-203ENST00000415188 NEPROQ6NW34 567 aa14.86□□□□□ -0.03
USP4-203ENST00000415188 ESRP1Q6NXG1 681 aaKnown RBP14.86□□□□□ -0.03
USP4-203ENST00000415188 ATG14Q6ZNE5 492 aa14.86□□□□□ -0.03
USP4-203ENST00000415188 RIPOR1Q6ZS17 1223 aa14.86□□□□□ -0.03
USP4-203ENST00000415188 SLC41A1Q8IVJ1 513 aa14.86□□□□□ -0.03
USP4-203ENST00000415188 CENPLQ8N0S6 344 aaPredicted RBP14.86□□□□□ -0.03
USP4-203ENST00000415188 TMEM151AQ8N4L1 468 aa14.86□□□□□ -0.03
USP4-203ENST00000415188 FBXO27Q8NI29 283 aa14.86□□□□□ -0.03
USP4-203ENST00000415188 ACTRT2Q8TDY3 377 aa14.86□□□□□ -0.03
USP4-203ENST00000415188 PEX13Q92968 403 aa14.86□□□□□ -0.03
USP4-203ENST00000415188 CCDC126Q96EE4 140 aa14.86□□□□□ -0.03
USP4-203ENST00000415188 ZNF419Q96HQ0 510 aaPredicted RBP14.86□□□□□ -0.03
USP4-203ENST00000415188 MRPL57Q9BQC6 102 aaKnown RBP14.86□□□□□ -0.03
USP4-203ENST00000415188 RTKNQ9BST9 563 aa14.86□□□□□ -0.03
USP4-203ENST00000415188 MRPL46Q9H2W6 279 aaKnown RBP14.86□□□□□ -0.03
USP4-203ENST00000415188 CRISPLD1Q9H336 500 aa14.86□□□□□ -0.03
USP4-203ENST00000415188 TCF7L2Q9NQB0 619 aa14.86□□□□□ -0.03
USP4-203ENST00000415188 GDE1Q9NZC3 331 aa14.86□□□□□ -0.03
USP4-203ENST00000415188 GMIPQ9P107 970 aa14.86□□□□□ -0.03
USP4-203ENST00000415188 SLC7A8Q9UHI5 535 aa14.86□□□□□ -0.03
USP4-203ENST00000415188 MAGED2Q9UNF1 606 aaPredicted RBP14.86□□□□□ -0.03
USP4-203ENST00000415188 GREB1Q4ZG55 1949 aa14.85□□□□□ -0.03
USP4-203ENST00000415188 E2F8A0AVK6 867 aa14.85□□□□□ -0.03
USP4-203ENST00000415188 DRGXA6NNA5 263 aa14.85□□□□□ -0.03
USP4-203ENST00000415188 PHGDHO43175 533 aaKnown RBP14.85□□□□□ -0.03
USP4-203ENST00000415188 NBL1P41271 181 aa14.85□□□□□ -0.03
USP4-203ENST00000415188 SLC1A2P43004 574 aa14.85□□□□□ -0.03
USP4-203ENST00000415188 GRIA4P48058 902 aa14.85□□□□□ -0.03
USP4-203ENST00000415188 MAPKAPK2P49137 400 aa14.85□□□□□ -0.03
USP4-203ENST00000415188 SLC12A2P55011 1212 aa14.85□□□□□ -0.03
USP4-203ENST00000415188 YBEYP58557 167 aaPredicted RBP14.85□□□□□ -0.03
USP4-203ENST00000415188 MPP1Q00013 466 aa14.85□□□□□ -0.03
USP4-203ENST00000415188 IL10RBQ08334 325 aa14.85□□□□□ -0.03
USP4-203ENST00000415188 HERC3Q15034 1050 aa14.85□□□□□ -0.03
USP4-203ENST00000415188 PARP15Q460N3 678 aa14.85□□□□□ -0.03
USP4-203ENST00000415188 TSTD2Q5T7W7 516 aa14.85□□□□□ -0.03
USP4-203ENST00000415188 MARC1Q5VT66 337 aa14.85□□□□□ -0.03
USP4-203ENST00000415188 C1orf146Q5VVC0 180 aa14.85□□□□□ -0.03
USP4-203ENST00000415188 TANGO2Q6ICL3 276 aa14.85□□□□□ -0.03
USP4-203ENST00000415188 ACAD11Q709F0 780 aa14.85□□□□□ -0.03
USP4-203ENST00000415188 ASCL5Q7RTU5 278 aa14.85□□□□□ -0.03
USP4-203ENST00000415188 PIWIL4Q7Z3Z4 852 aaKnown RBP14.85□□□□□ -0.03
USP4-203ENST00000415188 CPSF7Q8N684 471 aaKnown RBP14.85□□□□□ -0.03
USP4-203ENST00000415188 ACVR1CQ8NER5 493 aa14.85□□□□□ -0.03
USP4-203ENST00000415188 SPPL2BQ8TCT7 592 aa14.85□□□□□ -0.03
USP4-203ENST00000415188 C2orf15Q8WU43 125 aaKnown RBP14.85□□□□□ -0.03
USP4-203ENST00000415188 KCTD4Q8WVF5 259 aa14.85□□□□□ -0.03
USP4-203ENST00000415188 TADA1Q96BN2 335 aa14.85□□□□□ -0.03
USP4-203ENST00000415188 ELMO2Q96JJ3 720 aa14.85□□□□□ -0.03
USP4-203ENST00000415188 FAR2Q96K12 515 aa14.85□□□□□ -0.03
USP4-203ENST00000415188 SPATA17Q96L03 361 aa14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms