RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 PHF12Q96QT6 1004 aa13.4□□□□□ -0.26
VPS54-203ENST00000409558 GPR21Q99679 349 aa13.4□□□□□ -0.26
VPS54-203ENST00000409558 GRIP2Q9C0E4 1043 aa13.4□□□□□ -0.26
VPS54-203ENST00000409558 POLR1EQ9GZS1 481 aaKnown RBP13.4□□□□□ -0.26
VPS54-203ENST00000409558 ZMYM5Q9UJ78 669 aa13.4□□□□□ -0.26
VPS54-203ENST00000409558 E5RI56 91 aa13.4□□□□□ -0.26
VPS54-203ENST00000409558 M0QZQ0 153 aa13.4□□□□□ -0.26
VPS54-203ENST00000409558 PIP5K1BO14986 540 aa13.4□□□□□ -0.26
VPS54-203ENST00000409558 NCK1P16333 377 aa13.4□□□□□ -0.26
VPS54-203ENST00000409558 GJA1P17302 382 aa13.4□□□□□ -0.26
VPS54-203ENST00000409558 SLC6A4P31645 630 aa13.4□□□□□ -0.26
VPS54-203ENST00000409558 SLC11A1P49279 550 aa13.4□□□□□ -0.26
VPS54-203ENST00000409558 CCNG1P51959 295 aa13.4□□□□□ -0.26
VPS54-203ENST00000409558 PDK3Q15120 406 aa13.4□□□□□ -0.26
VPS54-203ENST00000409558 OR4D1Q15615 310 aa13.4□□□□□ -0.26
VPS54-203ENST00000409558 KDELC1Q6UW63 502 aa13.4□□□□□ -0.26
VPS54-203ENST00000409558 TPGS1Q6ZTW0 290 aa13.4□□□□□ -0.26
VPS54-203ENST00000409558 SIDT2Q8NBJ9 832 aaKnown RBP13.4□□□□□ -0.26
VPS54-203ENST00000409558 WBP2Q969T9 261 aa13.4□□□□□ -0.26
VPS54-203ENST00000409558 FBXO44Q9H4M3 255 aa13.4□□□□□ -0.26
VPS54-203ENST00000409558 TLR6Q9Y2C9 796 aa13.4□□□□□ -0.26
VPS54-203ENST00000409558 NUP214P35658 2090 aaPredicted RBP13.4□□□□□ -0.26
VPS54-203ENST00000409558 hCG_2014768A0A024R1R8 64 aa13.4□□□□□ -0.27
VPS54-203ENST00000409558 APOA4P06727 396 aa13.4□□□□□ -0.27
VPS54-203ENST00000409558 ADRA1AP35348 466 aa13.4□□□□□ -0.27
VPS54-203ENST00000409558 DIO3P55073 304 aa13.4□□□□□ -0.27
VPS54-203ENST00000409558 SPPL2BQ8TCT7 592 aa13.4□□□□□ -0.27
VPS54-203ENST00000409558 LPGAT1Q92604 370 aa13.4□□□□□ -0.27
VPS54-203ENST00000409558 CCDC97Q96F63 343 aaPredicted RBP13.4□□□□□ -0.27
VPS54-203ENST00000409558 TRIM4Q9C037 500 aa13.4□□□□□ -0.27
VPS54-203ENST00000409558 NOL11Q9H8H0 719 aaKnown RBP13.4□□□□□ -0.27
VPS54-203ENST00000409558 EVLQ9UI08 416 aaPredicted RBP13.4□□□□□ -0.27
VPS54-203ENST00000409558 FKBPLQ9UIM3 349 aa13.4□□□□□ -0.27
VPS54-203ENST00000409558 FCF1Q9Y324 198 aaKnown RBP13.4□□□□□ -0.27
VPS54-203ENST00000409558 PSMD3O43242 534 aa13.39□□□□□ -0.27
VPS54-203ENST00000409558 ALPIP09923 528 aa13.39□□□□□ -0.27
VPS54-203ENST00000409558 HGFP14210 728 aa13.39□□□□□ -0.27
VPS54-203ENST00000409558 TACR2P21452 398 aa13.39□□□□□ -0.27
VPS54-203ENST00000409558 EEF1DP29692 281 aaKnown RBP13.39□□□□□ -0.27
VPS54-203ENST00000409558 SH3BP2P78314 561 aa13.39□□□□□ -0.27
VPS54-203ENST00000409558 POU4F1Q01851 419 aa13.39□□□□□ -0.27
VPS54-203ENST00000409558 LARP7Q4G0J3 582 aaKnown RBP eCLIP13.39□□□□□ -0.27
VPS54-203ENST00000409558 NADSYN1Q6IA69 706 aa13.39□□□□□ -0.27
VPS54-203ENST00000409558 LILRA2Q8N149 483 aa13.39□□□□□ -0.27
VPS54-203ENST00000409558 IMP4Q96G21 291 aaKnown RBP13.39□□□□□ -0.27
VPS54-203ENST00000409558 ZBTB26Q9HCK0 441 aa13.39□□□□□ -0.27
VPS54-203ENST00000409558 TREX1Q9NSU2 369 aa13.39□□□□□ -0.27
VPS54-203ENST00000409558 NSMCE4AQ9NXX6 385 aa13.39□□□□□ -0.27
VPS54-203ENST00000409558 PCDHB8Q9UN66 801 aa13.39□□□□□ -0.27
VPS54-203ENST00000409558 ANKRD6Q9Y2G4 727 aa13.39□□□□□ -0.27
VPS54-203ENST00000409558 PCDHB9Q9Y5E1 797 aa13.39□□□□□ -0.27
VPS54-203ENST00000409558 A6NHS1 94 aa13.39□□□□□ -0.27
VPS54-203ENST00000409558 K7ERQ8 282 aa13.39□□□□□ -0.27
VPS54-203ENST00000409558 ZNF623O75123 536 aa13.39□□□□□ -0.27
VPS54-203ENST00000409558 SH3BGRLO75368 114 aa13.39□□□□□ -0.27
VPS54-203ENST00000409558 CLIC3O95833 236 aa13.39□□□□□ -0.27
VPS54-203ENST00000409558 S1PR4O95977 384 aa13.39□□□□□ -0.27
VPS54-203ENST00000409558 TECRLQ5HYJ1 363 aa13.39□□□□□ -0.27
VPS54-203ENST00000409558 PIWIL4Q7Z3Z4 852 aaKnown RBP13.39□□□□□ -0.27
VPS54-203ENST00000409558 CLDN19Q8N6F1 224 aa13.39□□□□□ -0.27
VPS54-203ENST00000409558 CDYL2Q8N8U2 506 aa13.39□□□□□ -0.27
VPS54-203ENST00000409558 MYLIPQ8WY64 445 aa13.39□□□□□ -0.27
VPS54-203ENST00000409558 BTN2A3PQ96KV6 586 aa13.39□□□□□ -0.27
VPS54-203ENST00000409558 PAPOLBQ9NRJ5 636 aaKnown RBP13.39□□□□□ -0.27
VPS54-203ENST00000409558 TCAF2A6NFQ2 919 aa13.39□□□□□ -0.27
VPS54-203ENST00000409558 PDLIM1O00151 329 aa13.39□□□□□ -0.27
VPS54-203ENST00000409558 CCNT2O60583 730 aaKnown RBP13.39□□□□□ -0.27
VPS54-203ENST00000409558 RHOQP17081 205 aa13.39□□□□□ -0.27
VPS54-203ENST00000409558 STXBP5Q5T5C0 1151 aa13.39□□□□□ -0.27
VPS54-203ENST00000409558 KIAA0930Q6ICG6 404 aaPredicted RBP13.39□□□□□ -0.27
VPS54-203ENST00000409558 RP9Q8TA86 221 aaKnown RBP13.39□□□□□ -0.27
VPS54-203ENST00000409558 MTFMTQ96DP5 389 aaKnown RBP13.39□□□□□ -0.27
VPS54-203ENST00000409558 TSGA13Q96PP4 275 aa13.39□□□□□ -0.27
VPS54-203ENST00000409558 SLC30A3Q99726 388 aa13.39□□□□□ -0.27
VPS54-203ENST00000409558 CATSPERZQ9NTU4 200 aa13.39□□□□□ -0.27
VPS54-203ENST00000409558 DDX18Q9NVP1 670 aaKnown RBP13.39□□□□□ -0.27
VPS54-203ENST00000409558 CD274Q9NZQ7 290 aa13.39□□□□□ -0.27
VPS54-203ENST00000409558 SORCS3Q9UPU3 1222 aa13.39□□□□□ -0.27
VPS54-203ENST00000409558 DNAH14Q0VDD8 3507 aa13.38□□□□□ -0.27
VPS54-203ENST00000409558 MTMR11A4FU01 709 aa13.38□□□□□ -0.27
VPS54-203ENST00000409558 GIPC1O14908 333 aa13.38□□□□□ -0.27
VPS54-203ENST00000409558 MMP2P08253 660 aa13.38□□□□□ -0.27
VPS54-203ENST00000409558 TLR1Q15399 786 aa13.38□□□□□ -0.27
VPS54-203ENST00000409558 AAK1Q2M2I8 961 aa13.38□□□□□ -0.27
VPS54-203ENST00000409558 ZNF549Q6P9A3 640 aa13.38□□□□□ -0.27
VPS54-203ENST00000409558 MRPL10Q7Z7H8 261 aaKnown RBP13.38□□□□□ -0.27
VPS54-203ENST00000409558 COLGALT2Q8IYK4 626 aa13.38□□□□□ -0.27
VPS54-203ENST00000409558 OR4L1Q8NH43 312 aa13.38□□□□□ -0.27
VPS54-203ENST00000409558 CALML6Q8TD86 181 aa13.38□□□□□ -0.27
VPS54-203ENST00000409558 PPP2R3CQ969Q6 453 aa13.38□□□□□ -0.27
VPS54-203ENST00000409558 SEPHS2Q99611 448 aa13.38□□□□□ -0.27
VPS54-203ENST00000409558 C1orf21Q9H246 121 aa13.38□□□□□ -0.27
VPS54-203ENST00000409558 CAAP1Q9H8G2 361 aa13.38□□□□□ -0.27
VPS54-203ENST00000409558 AKTIPQ9H8T0 292 aa13.38□□□□□ -0.27
VPS54-203ENST00000409558 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.38□□□□□ -0.27
VPS54-203ENST00000409558 THEGQ9P2T0 379 aa13.38□□□□□ -0.27
VPS54-203ENST00000409558 C2orf78A6NCI8 922 aa13.38□□□□□ -0.27
VPS54-203ENST00000409558 FFAR3O14843 346 aa13.38□□□□□ -0.27
VPS54-203ENST00000409558 GPR42O15529 346 aa13.38□□□□□ -0.27
VPS54-203ENST00000409558 RNASEH2AO75792 299 aaKnown RBP13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms