RNA–Protein interactions for RNA: ENST00000409470.5

USP39-203, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,034 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-203ENST00000409470 ZNF549Q6P9A3 640 aa20.71■□□□□ 0.91
USP39-203ENST00000409470 RINLQ6ZS11 566 aa20.71■□□□□ 0.91
USP39-203ENST00000409470 TXNDC5Q8NBS9 432 aaKnown RBP20.71■□□□□ 0.91
USP39-203ENST00000409470 RAD9AQ99638 391 aa20.71■□□□□ 0.91
USP39-203ENST00000409470 INTS10Q9NVR2 710 aaKnown RBP20.71■□□□□ 0.91
USP39-203ENST00000409470 HCFC1R1Q9NWW0 138 aa20.71■□□□□ 0.91
USP39-203ENST00000409470 PCDHB9Q9Y5E1 797 aa20.71■□□□□ 0.91
USP39-203ENST00000409470 UBA6A0AVT1 1052 aaPredicted RBP20.71■□□□□ 0.91
USP39-203ENST00000409470 PRR5-ARHGAP8B1AHC4 643 aa20.71■□□□□ 0.91
USP39-203ENST00000409470 TLL1O43897 1013 aa20.71■□□□□ 0.91
USP39-203ENST00000409470 CPA2P48052 419 aa20.71■□□□□ 0.91
USP39-203ENST00000409470 RPL14P50914 215 aaKnown RBP20.71■□□□□ 0.91
USP39-203ENST00000409470 ARHGAP8P85298 464 aa20.71■□□□□ 0.91
USP39-203ENST00000409470 TYSND1Q2T9J0 566 aa20.71■□□□□ 0.91
USP39-203ENST00000409470 RALGPS1Q5JS13 557 aa20.71■□□□□ 0.91
USP39-203ENST00000409470 MPP7Q5T2T1 576 aa20.71■□□□□ 0.91
USP39-203ENST00000409470 EPGNQ6UW88 154 aa20.71■□□□□ 0.91
USP39-203ENST00000409470 TMEM207Q6UWW9 146 aa20.71■□□□□ 0.91
USP39-203ENST00000409470 MIPEPQ99797 713 aa20.71■□□□□ 0.91
USP39-203ENST00000409470 TLE6Q9H808 572 aa20.71■□□□□ 0.91
USP39-203ENST00000409470 POLR3BQ9NW08 1133 aaPredicted RBP20.71■□□□□ 0.91
USP39-203ENST00000409470 NCKIPSDQ9NZQ3 722 aa20.71■□□□□ 0.91
USP39-203ENST00000409470 KIAA1522Q9P206 1035 aaPredicted RBP20.71■□□□□ 0.91
USP39-203ENST00000409470 TAGLN3Q9UI15 199 aa20.71■□□□□ 0.91
USP39-203ENST00000409470 LCHNA4D1U4 455 aa20.7■□□□□ 0.9
USP39-203ENST00000409470 NEMP2A6NFY4 417 aa20.7■□□□□ 0.9
USP39-203ENST00000409470 STX7O15400 261 aaKnown RBP20.7■□□□□ 0.9
USP39-203ENST00000409470 SLC26A3P40879 764 aa20.7■□□□□ 0.9
USP39-203ENST00000409470 DNAJB13P59910 316 aa20.7■□□□□ 0.9
USP39-203ENST00000409470 AP1S1P61966 158 aa20.7■□□□□ 0.9
USP39-203ENST00000409470 PFKPQ01813 784 aa20.7■□□□□ 0.9
USP39-203ENST00000409470 KDSRQ06136 332 aa20.7■□□□□ 0.9
USP39-203ENST00000409470 LMAN2Q12907 356 aa20.7■□□□□ 0.9
USP39-203ENST00000409470 MRPL43Q8N983 215 aaKnown RBP20.7■□□□□ 0.9
USP39-203ENST00000409470 ACDQ96AP0 544 aa20.7■□□□□ 0.9
USP39-203ENST00000409470 CCDC126Q96EE4 140 aa20.7■□□□□ 0.9
USP39-203ENST00000409470 SHCBP1LQ9BZQ2 653 aa20.7■□□□□ 0.9
USP39-203ENST00000409470 CLEC4EQ9ULY5 219 aa20.7■□□□□ 0.9
USP39-203ENST00000409470 IRAK3Q9Y616 596 aa20.7■□□□□ 0.9
USP39-203ENST00000409470 NDUFS3O75489 264 aa20.7■□□□□ 0.9
USP39-203ENST00000409470 CYBBP04839 570 aa20.7■□□□□ 0.9
USP39-203ENST00000409470 TFEBP19484 476 aa20.7■□□□□ 0.9
USP39-203ENST00000409470 BMPR1AP36894 532 aa20.7■□□□□ 0.9
USP39-203ENST00000409470 HK2P52789 917 aa20.7■□□□□ 0.9
USP39-203ENST00000409470 LBX1P52954 281 aa20.7■□□□□ 0.9
USP39-203ENST00000409470 PTPRRQ15256 657 aa20.7■□□□□ 0.9
USP39-203ENST00000409470 TMEM240Q5SV17 173 aa20.7■□□□□ 0.9
USP39-203ENST00000409470 TRIM67Q6ZTA4 783 aa20.7■□□□□ 0.9
USP39-203ENST00000409470 PIWIL4Q7Z3Z4 852 aaKnown RBP20.7■□□□□ 0.9
USP39-203ENST00000409470 TEX9Q8N6V9 391 aa20.7■□□□□ 0.9
USP39-203ENST00000409470 MICAL1Q8TDZ2 1067 aa20.7■□□□□ 0.9
USP39-203ENST00000409470 SH3RF2Q8TEC5 729 aa20.7■□□□□ 0.9
USP39-203ENST00000409470 USP13Q92995 863 aaPredicted RBP20.7■□□□□ 0.9
USP39-203ENST00000409470 AARSD1Q9BTE6 412 aaKnown RBP20.7■□□□□ 0.9
USP39-203ENST00000409470 CADM1Q9BY67 442 aaKnown RBP20.7■□□□□ 0.9
USP39-203ENST00000409470 CCDC68Q9H2F9 335 aa20.7■□□□□ 0.9
USP39-203ENST00000409470 CYP4F12Q9HCS2 524 aa20.7■□□□□ 0.9
USP39-203ENST00000409470 BPIFA1Q9NP55 256 aa20.7■□□□□ 0.9
USP39-203ENST00000409470 HACD3Q9P035 362 aa20.7■□□□□ 0.9
USP39-203ENST00000409470 FKBPLQ9UIM3 349 aa20.7■□□□□ 0.9
USP39-203ENST00000409470 FNDC3AQ9Y2H6 1198 aaKnown RBP20.7■□□□□ 0.9
USP39-203ENST00000409470 SPECC1L-ADORA2AF8WAN1 911 aa20.69■□□□□ 0.9
USP39-203ENST00000409470 SMAD6O43541 496 aaKnown RBP20.69■□□□□ 0.9
USP39-203ENST00000409470 NPHS1O60500 1241 aa20.69■□□□□ 0.9
USP39-203ENST00000409470 WISP3O95389 354 aaPredicted RBP20.69■□□□□ 0.9
USP39-203ENST00000409470 PFKLP17858 780 aa20.69■□□□□ 0.9
USP39-203ENST00000409470 NCF2P19878 526 aaPredicted RBP20.69■□□□□ 0.9
USP39-203ENST00000409470 CCR2P41597 374 aa20.69■□□□□ 0.9
USP39-203ENST00000409470 PDAP1Q13442 181 aaKnown RBP20.69■□□□□ 0.9
USP39-203ENST00000409470 SLC9B1Q4ZJI4 515 aa20.69■□□□□ 0.9
USP39-203ENST00000409470 ARMC12Q5T9G4 340 aa20.69■□□□□ 0.9
USP39-203ENST00000409470 SEL1L3Q68CR1 1132 aa20.69■□□□□ 0.9
USP39-203ENST00000409470 PAF1Q8N7H5 531 aa20.69■□□□□ 0.9
USP39-203ENST00000409470 OR6K2Q8NGY2 324 aa20.69■□□□□ 0.9
USP39-203ENST00000409470 FIBINQ8TAL6 211 aa20.69■□□□□ 0.9
USP39-203ENST00000409470 POF1BQ8WVV4 589 aa20.69■□□□□ 0.9
USP39-203ENST00000409470 ALG9Q9H6U8 611 aa20.69■□□□□ 0.9
USP39-203ENST00000409470 MAN1C1Q9NR34 630 aa20.69■□□□□ 0.9
USP39-203ENST00000409470 TAS2R1Q9NYW7 299 aa20.69■□□□□ 0.9
USP39-203ENST00000409470 ZDHHC2Q9UIJ5 367 aa20.69■□□□□ 0.9
USP39-203ENST00000409470 ARHGAP26Q9UNA1 814 aa20.69■□□□□ 0.9
USP39-203ENST00000409470 LZTS1Q9Y250 596 aa20.69■□□□□ 0.9
USP39-203ENST00000409470 MTF2Q9Y483 593 aaPredicted RBP20.69■□□□□ 0.9
USP39-203ENST00000409470 SLC4A7Q9Y6M7 1214 aa20.69■□□□□ 0.9
USP39-203ENST00000409470 LAMA2P24043 3122 aaKnown RBP20.68■□□□□ 0.9
USP39-203ENST00000409470 B2RBV5 119 aa20.68■□□□□ 0.9
USP39-203ENST00000409470 MATN2O00339 956 aa20.68■□□□□ 0.9
USP39-203ENST00000409470 HDAC3O15379 428 aa20.68■□□□□ 0.9
USP39-203ENST00000409470 GSC2O15499 205 aa20.68■□□□□ 0.9
USP39-203ENST00000409470 AOC1P19801 751 aa20.68■□□□□ 0.9
USP39-203ENST00000409470 PSMA3P25788 255 aa20.68■□□□□ 0.9
USP39-203ENST00000409470 FMO4P31512 558 aa20.68■□□□□ 0.9
USP39-203ENST00000409470 MC4RP32245 332 aa20.68■□□□□ 0.9
USP39-203ENST00000409470 CD70P32970 193 aa20.68■□□□□ 0.9
USP39-203ENST00000409470 LSMEM2Q8N112 164 aa20.68■□□□□ 0.9
USP39-203ENST00000409470 FAM13CQ8NE31 585 aa20.68■□□□□ 0.9
USP39-203ENST00000409470 MAPK15Q8TD08 544 aa20.68■□□□□ 0.9
USP39-203ENST00000409470 SP7Q8TDD2 431 aaPredicted RBP20.68■□□□□ 0.9
USP39-203ENST00000409470 MCUR1Q96AQ8 359 aa20.68■□□□□ 0.9
USP39-203ENST00000409470 FAM136AQ96C01 138 aa20.68■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms