RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 PKNOX2Q96KN3 472 aa14.24□□□□□ -0.13
SKA1-202ENST00000398452 FAM129BQ96TA1 746 aa14.24□□□□□ -0.13
SKA1-202ENST00000398452 RSPH9Q9H1X1 276 aaPredicted RBP14.24□□□□□ -0.13
SKA1-202ENST00000398452 VIPAS39Q9H9C1 493 aa14.24□□□□□ -0.13
SKA1-202ENST00000398452 PPCSQ9HAB8 311 aa14.24□□□□□ -0.13
SKA1-202ENST00000398452 RAD18Q9NS91 495 aa14.24□□□□□ -0.13
SKA1-202ENST00000398452 C20orf96Q9NUD7 363 aaPredicted RBP14.24□□□□□ -0.13
SKA1-202ENST00000398452 RIMKLBQ9ULI2 386 aa14.24□□□□□ -0.13
SKA1-202ENST00000398452 MMP17Q9ULZ9 603 aa14.24□□□□□ -0.13
SKA1-202ENST00000398452 KMT2EQ8IZD2 1858 aa14.24□□□□□ -0.13
SKA1-202ENST00000398452 PFDN6O15212 129 aa14.23□□□□□ -0.13
SKA1-202ENST00000398452 ALDH1A2O94788 518 aa14.23□□□□□ -0.13
SKA1-202ENST00000398452 PRKCGP05129 697 aa14.23□□□□□ -0.13
SKA1-202ENST00000398452 ALPIP09923 528 aa14.23□□□□□ -0.13
SKA1-202ENST00000398452 NUDT17P0C025 328 aa14.23□□□□□ -0.13
SKA1-202ENST00000398452 ZNF30P17039 623 aa14.23□□□□□ -0.13
SKA1-202ENST00000398452 VIPR1P32241 457 aa14.23□□□□□ -0.13
SKA1-202ENST00000398452 HNF1BP35680 557 aa14.23□□□□□ -0.13
SKA1-202ENST00000398452 ZBTB16Q05516 673 aa14.23□□□□□ -0.13
SKA1-202ENST00000398452 HSP90B2PQ58FF3 399 aa14.23□□□□□ -0.13
SKA1-202ENST00000398452 ZDHHC20Q5W0Z9 365 aa14.23□□□□□ -0.13
SKA1-202ENST00000398452 STEAP4Q687X5 459 aa14.23□□□□□ -0.13
SKA1-202ENST00000398452 PDPK2PQ6A1A2 396 aa14.23□□□□□ -0.13
SKA1-202ENST00000398452 CES3Q6UWW8 571 aa14.23□□□□□ -0.13
SKA1-202ENST00000398452 LRIG3Q6UXM1 1119 aa14.23□□□□□ -0.13
SKA1-202ENST00000398452 ERN2Q76MJ5 926 aaKnown RBP14.23□□□□□ -0.13
SKA1-202ENST00000398452 TMEM135Q86UB9 458 aa14.23□□□□□ -0.13
SKA1-202ENST00000398452 RASSF3Q86WH2 238 aa14.23□□□□□ -0.13
SKA1-202ENST00000398452 TMPRSS6Q8IU80 811 aa14.23□□□□□ -0.13
SKA1-202ENST00000398452 IGDCC3Q8IVU1 814 aa14.23□□□□□ -0.13
SKA1-202ENST00000398452 CNPY4Q8N129 248 aa14.23□□□□□ -0.13
SKA1-202ENST00000398452 OR6P1Q8NGX9 317 aa14.23□□□□□ -0.13
SKA1-202ENST00000398452 FBF1Q8TES7 1133 aa14.23□□□□□ -0.13
SKA1-202ENST00000398452 TBRG4Q969Z0 631 aaKnown RBP eCLIP14.23□□□□□ -0.13
SKA1-202ENST00000398452 ERLEC1Q96DZ1 483 aa14.23□□□□□ -0.13
SKA1-202ENST00000398452 SIPA1Q96FS4 1042 aa14.23□□□□□ -0.13
SKA1-202ENST00000398452 CERS2Q96G23 380 aa14.23□□□□□ -0.13
SKA1-202ENST00000398452 NSMCE3Q96MG7 304 aa14.23□□□□□ -0.13
SKA1-202ENST00000398452 PRRX2Q99811 253 aa14.23□□□□□ -0.13
SKA1-202ENST00000398452 TBC1D17Q9HA65 648 aa14.23□□□□□ -0.13
SKA1-202ENST00000398452 NSMCE4AQ9NXX6 385 aa14.23□□□□□ -0.13
SKA1-202ENST00000398452 PKD2L2Q9NZM6 624 aa14.23□□□□□ -0.13
SKA1-202ENST00000398452 ZFATQ9P243 1243 aa14.23□□□□□ -0.13
SKA1-202ENST00000398452 BCCIPQ9P287 314 aaKnown RBP eCLIP14.23□□□□□ -0.13
SKA1-202ENST00000398452 HCN2Q9UL51 889 aa14.23□□□□□ -0.13
SKA1-202ENST00000398452 PPIL1Q9Y3C6 166 aa14.23□□□□□ -0.13
SKA1-202ENST00000398452 PTPRZ1P23471 2315 aaPredicted RBP14.23□□□□□ -0.13
SKA1-202ENST00000398452 TCRBV9S1A1TA0A576 114 aa14.22□□□□□ -0.13
SKA1-202ENST00000398452 POC1B-GALNT4F8VUJ3 575 aa14.22□□□□□ -0.13
SKA1-202ENST00000398452 OPA1O60313 960 aa14.22□□□□□ -0.13
SKA1-202ENST00000398452 RPP40O75818 363 aaKnown RBP14.22□□□□□ -0.13
SKA1-202ENST00000398452 INHBAP08476 426 aa14.22□□□□□ -0.13
SKA1-202ENST00000398452 CHRNB1P11230 501 aa14.22□□□□□ -0.13
SKA1-202ENST00000398452 ADRB3P13945 408 aa14.22□□□□□ -0.13
SKA1-202ENST00000398452 TIMP2P16035 220 aa14.22□□□□□ -0.13
SKA1-202ENST00000398452 TARSP26639 723 aaKnown RBP14.22□□□□□ -0.13
SKA1-202ENST00000398452 NMBRP28336 390 aa14.22□□□□□ -0.13
SKA1-202ENST00000398452 MSH2P43246 934 aa14.22□□□□□ -0.13
SKA1-202ENST00000398452 DGKEP52429 567 aa14.22□□□□□ -0.13
SKA1-202ENST00000398452 TMPRSS15P98073 1019 aa14.22□□□□□ -0.13
SKA1-202ENST00000398452 MGAT5Q09328 741 aa14.22□□□□□ -0.13
SKA1-202ENST00000398452 NAB1Q13506 487 aa14.22□□□□□ -0.13
SKA1-202ENST00000398452 LGSNQ5TDP6 509 aa14.22□□□□□ -0.13
SKA1-202ENST00000398452 KIAA0930Q6ICG6 404 aaPredicted RBP14.22□□□□□ -0.13
SKA1-202ENST00000398452 ZNF449Q6P9G9 518 aa14.22□□□□□ -0.13
SKA1-202ENST00000398452 KIAA1324Q6UXG2 1013 aaKnown RBP14.22□□□□□ -0.13
SKA1-202ENST00000398452 PARS2Q7L3T8 475 aaKnown RBP14.22□□□□□ -0.13
SKA1-202ENST00000398452 TAOK1Q7L7X3 1001 aa14.22□□□□□ -0.13
SKA1-202ENST00000398452 LYSMD3Q7Z3D4 306 aa14.22□□□□□ -0.13
SKA1-202ENST00000398452 KCNMB4Q86W47 210 aa14.22□□□□□ -0.13
SKA1-202ENST00000398452 CACUL1Q86Y37 369 aa14.22□□□□□ -0.13
SKA1-202ENST00000398452 LMNTD2Q8IXW0 634 aa14.22□□□□□ -0.13
SKA1-202ENST00000398452 HDDC3Q8N4P3 179 aa14.22□□□□□ -0.13
SKA1-202ENST00000398452 MFSD3Q96ES6 412 aa14.22□□□□□ -0.13
SKA1-202ENST00000398452 MCCC1Q96RQ3 725 aaPredicted RBP14.22□□□□□ -0.13
SKA1-202ENST00000398452 LYSMD1Q96S90 227 aa14.22□□□□□ -0.13
SKA1-202ENST00000398452 TTC1Q99614 292 aa14.22□□□□□ -0.13
SKA1-202ENST00000398452 FAM167BQ9BTA0 163 aa14.22□□□□□ -0.13
SKA1-202ENST00000398452 HDAC8Q9BY41 377 aa14.22□□□□□ -0.13
SKA1-202ENST00000398452 ROPN1BQ9BZX4 212 aaPredicted RBP14.22□□□□□ -0.13
SKA1-202ENST00000398452 ACSS3Q9H6R3 686 aa14.22□□□□□ -0.13
SKA1-202ENST00000398452 ROPN1Q9HAT0 212 aaPredicted RBP14.22□□□□□ -0.13
SKA1-202ENST00000398452 PCDH12Q9NPG4 1184 aa14.22□□□□□ -0.13
SKA1-202ENST00000398452 B4GALT6Q9UBX8 382 aa14.22□□□□□ -0.13
SKA1-202ENST00000398452 SARDHQ9UL12 918 aa14.22□□□□□ -0.13
SKA1-202ENST00000398452 SPO11Q9Y5K1 396 aa14.22□□□□□ -0.13
SKA1-202ENST00000398452 ARL5AQ9Y689 179 aa14.22□□□□□ -0.13
SKA1-202ENST00000398452 SLC30A1Q9Y6M5 507 aa14.22□□□□□ -0.13
SKA1-202ENST00000398452 COL4A2P08572 1712 aa14.21□□□□□ -0.13
SKA1-202ENST00000398452 TCRBV21S2A2A0A5A6 115 aa14.21□□□□□ -0.13
SKA1-202ENST00000398452 TLDC2A0PJX2 215 aa14.21□□□□□ -0.13
SKA1-202ENST00000398452 KRBA1A5PL33 1030 aa14.21□□□□□ -0.13
SKA1-202ENST00000398452 MROH6A6NGR9 719 aa14.21□□□□□ -0.13
SKA1-202ENST00000398452 A8MX80 341 aa14.21□□□□□ -0.13
SKA1-202ENST00000398452 CHURC1-FNTBB4DL54 471 aa14.21□□□□□ -0.13
SKA1-202ENST00000398452 MID1O15344 667 aa14.21□□□□□ -0.13
SKA1-202ENST00000398452 HRO43593 1189 aa14.21□□□□□ -0.13
SKA1-202ENST00000398452 LDB2O43679 373 aa14.21□□□□□ -0.13
SKA1-202ENST00000398452 ADAM23O75077 832 aa14.21□□□□□ -0.13
SKA1-202ENST00000398452 RNASEH2AO75792 299 aaKnown RBP14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms