RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 MPP3Q13368 585 aa21.72■■□□□ 1.07
CLN3-207ENST00000395653 PTK2BQ14289 1009 aa21.72■■□□□ 1.07
CLN3-207ENST00000395653 INPP5AQ14642 412 aa21.72■■□□□ 1.07
CLN3-207ENST00000395653 DENND2CQ68D51 928 aa21.72■■□□□ 1.07
CLN3-207ENST00000395653 CCDC70Q6NSX1 233 aa21.72■■□□□ 1.07
CLN3-207ENST00000395653 ESRP1Q6NXG1 681 aaKnown RBP21.72■■□□□ 1.07
CLN3-207ENST00000395653 KDELC2Q7Z4H8 507 aa21.72■■□□□ 1.07
CLN3-207ENST00000395653 PARGQ86W56 976 aa21.72■■□□□ 1.07
CLN3-207ENST00000395653 NAXDQ8IW45 347 aa21.72■■□□□ 1.07
CLN3-207ENST00000395653 TRMT1Q9NXH9 659 aaKnown RBP21.72■■□□□ 1.07
CLN3-207ENST00000395653 LOC285095A0A1B0GVY8 99 aa21.72■■□□□ 1.07
CLN3-207ENST00000395653 C5orf60A6NFR6 353 aa21.72■■□□□ 1.07
CLN3-207ENST00000395653 PCCBP05166 539 aa21.72■■□□□ 1.07
CLN3-207ENST00000395653 MSNP26038 577 aaKnown RBP21.72■■□□□ 1.07
CLN3-207ENST00000395653 STC1P52823 247 aa21.72■■□□□ 1.07
CLN3-207ENST00000395653 WNT3AP56704 352 aa21.72■■□□□ 1.07
CLN3-207ENST00000395653 IL9RQ01113 521 aa21.72■■□□□ 1.07
CLN3-207ENST00000395653 CDKN3Q16667 212 aa21.72■■□□□ 1.07
CLN3-207ENST00000395653 TPRG1LQ5T0D9 272 aa21.72■■□□□ 1.07
CLN3-207ENST00000395653 TECPR1Q7Z6L1 1165 aa21.72■■□□□ 1.07
CLN3-207ENST00000395653 PLA2G15Q8NCC3 412 aa21.72■■□□□ 1.07
CLN3-207ENST00000395653 SAP25Q8TEE9 199 aa21.72■■□□□ 1.07
CLN3-207ENST00000395653 MRGPRX2Q96LB1 330 aa21.72■■□□□ 1.07
CLN3-207ENST00000395653 PPP1R2P1Q96PQ5 205 aa21.72■■□□□ 1.07
CLN3-207ENST00000395653 SRPK1Q96SB4 655 aaKnown RBP21.72■■□□□ 1.07
CLN3-207ENST00000395653 CACNA1AO00555 2505 aa21.71■■□□□ 1.07
CLN3-207ENST00000395653 A0A0U1RQS6 177 aa21.71■■□□□ 1.07
CLN3-207ENST00000395653 C1orf232A0A0U1RR37 186 aa21.71■■□□□ 1.07
CLN3-207ENST00000395653 ENC1O14682 589 aa21.71■■□□□ 1.07
CLN3-207ENST00000395653 LIASO43766 372 aa21.71■■□□□ 1.07
CLN3-207ENST00000395653 SH3BP5O60239 455 aa21.71■■□□□ 1.07
CLN3-207ENST00000395653 KIF5CO60282 957 aa21.71■■□□□ 1.07
CLN3-207ENST00000395653 ANXA9O76027 345 aa21.71■■□□□ 1.07
CLN3-207ENST00000395653 KCNK5O95279 499 aa21.71■■□□□ 1.07
CLN3-207ENST00000395653 C1SP09871 688 aa21.71■■□□□ 1.07
CLN3-207ENST00000395653 CEACAM1P13688 526 aa21.71■■□□□ 1.07
CLN3-207ENST00000395653 TNNT3P45378 269 aaPredicted RBP21.71■■□□□ 1.07
CLN3-207ENST00000395653 GEMP55040 296 aa21.71■■□□□ 1.07
CLN3-207ENST00000395653 INAVAQ3KP66 663 aa21.71■■□□□ 1.07
CLN3-207ENST00000395653 ZNF569Q5MCW4 686 aa21.71■■□□□ 1.07
CLN3-207ENST00000395653 MACC1Q6ZN28 852 aa21.71■■□□□ 1.07
CLN3-207ENST00000395653 Q6ZVL8 140 aa21.71■■□□□ 1.07
CLN3-207ENST00000395653 FAM71DQ8N9W8 422 aa21.71■■□□□ 1.07
CLN3-207ENST00000395653 DEFB124Q8NES8 71 aa21.71■■□□□ 1.07
CLN3-207ENST00000395653 CCDC110Q8TBZ0 833 aa21.71■■□□□ 1.07
CLN3-207ENST00000395653 MAIP1Q8WWC4 291 aa21.71■■□□□ 1.07
CLN3-207ENST00000395653 ATG4AQ8WYN0 398 aa21.71■■□□□ 1.07
CLN3-207ENST00000395653 GORASP1Q9BQQ3 440 aa21.71■■□□□ 1.07
CLN3-207ENST00000395653 TMEM121Q9BTD3 319 aa21.71■■□□□ 1.07
CLN3-207ENST00000395653 APOOQ9BUR5 198 aa21.71■■□□□ 1.07
CLN3-207ENST00000395653 MAGEE1Q9HCI5 957 aa21.71■■□□□ 1.07
CLN3-207ENST00000395653 GOLGA8CPA6NN73 597 aa21.7■■□□□ 1.06
CLN3-207ENST00000395653 F5H423 210 aaPredicted RBP21.7■■□□□ 1.06
CLN3-207ENST00000395653 GCATO75600 419 aa21.7■■□□□ 1.06
CLN3-207ENST00000395653 CLDN7O95471 211 aa21.7■■□□□ 1.06
CLN3-207ENST00000395653 FGGP02679 453 aa21.7■■□□□ 1.06
CLN3-207ENST00000395653 ITGAVP06756 1048 aa21.7■■□□□ 1.06
CLN3-207ENST00000395653 TSHRP16473 764 aa21.7■■□□□ 1.06
CLN3-207ENST00000395653 TRIM23P36406 574 aa21.7■■□□□ 1.06
CLN3-207ENST00000395653 GRK6P43250 576 aa21.7■■□□□ 1.06
CLN3-207ENST00000395653 NOVA1P51513 510 aaKnown RBP21.7■■□□□ 1.06
CLN3-207ENST00000395653 DPTQ07507 201 aa21.7■■□□□ 1.06
CLN3-207ENST00000395653 PRPSAP1Q14558 356 aa21.7■■□□□ 1.06
CLN3-207ENST00000395653 SIX1Q15475 284 aaPredicted RBP21.7■■□□□ 1.06
CLN3-207ENST00000395653 OASLQ15646 514 aaKnown RBP21.7■■□□□ 1.06
CLN3-207ENST00000395653 PNCKQ6P2M8 343 aa21.7■■□□□ 1.06
CLN3-207ENST00000395653 ZNF765Q7L2R6 523 aa21.7■■□□□ 1.06
CLN3-207ENST00000395653 SLC35F6Q8N357 371 aa21.7■■□□□ 1.06
CLN3-207ENST00000395653 IPMKQ8NFU5 416 aa21.7■■□□□ 1.06
CLN3-207ENST00000395653 DNAJC28Q9NX36 388 aa21.7■■□□□ 1.06
CLN3-207ENST00000395653 ZKSCAN5Q9Y2L8 839 aa21.7■■□□□ 1.06
CLN3-207ENST00000395653 AAR2Q9Y312 384 aaKnown RBP21.7■■□□□ 1.06
CLN3-207ENST00000395653 OR1A2Q9Y585 309 aa21.7■■□□□ 1.06
CLN3-207ENST00000395653 CABIN1Q9Y6J0 2220 aa21.69■■□□□ 1.06
CLN3-207ENST00000395653 CEP104O60308 925 aa21.69■■□□□ 1.06
CLN3-207ENST00000395653 CSF2P04141 144 aa21.69■■□□□ 1.06
CLN3-207ENST00000395653 HOXC4P09017 264 aaPredicted RBP21.69■■□□□ 1.06
CLN3-207ENST00000395653 ATXN1LP0C7T5 689 aaKnown RBP21.69■■□□□ 1.06
CLN3-207ENST00000395653 NME1P15531 152 aaKnown RBP21.69■■□□□ 1.06
CLN3-207ENST00000395653 HLA-DPA1P20036 260 aa21.69■■□□□ 1.06
CLN3-207ENST00000395653 PSMB4P28070 264 aa21.69■■□□□ 1.06
CLN3-207ENST00000395653 HTR1BP28222 390 aa21.69■■□□□ 1.06
CLN3-207ENST00000395653 TEAD1P28347 426 aa21.69■■□□□ 1.06
CLN3-207ENST00000395653 STIP1P31948 543 aaKnown RBP21.69■■□□□ 1.06
CLN3-207ENST00000395653 CXCR5P32302 372 aa21.69■■□□□ 1.06
CLN3-207ENST00000395653 GDF10P55107 478 aa21.69■■□□□ 1.06
CLN3-207ENST00000395653 HNRNPKP61978 463 aaKnown RBP eCLIP21.69■■□□□ 1.06
CLN3-207ENST00000395653 BNIP3Q12983 259 aa21.69■■□□□ 1.06
CLN3-207ENST00000395653 NFATC4Q14934 902 aa21.69■■□□□ 1.06
CLN3-207ENST00000395653 PPM1JQ5JR12 505 aa21.69■■□□□ 1.06
CLN3-207ENST00000395653 ARHGEF18Q6ZSZ5 1173 aa21.69■■□□□ 1.06
CLN3-207ENST00000395653 NLRP8Q86W28 1048 aa21.69■■□□□ 1.06
CLN3-207ENST00000395653 GATAD2AQ86YP4 633 aa21.69■■□□□ 1.06
CLN3-207ENST00000395653 NRSN1Q8IZ57 195 aa21.69■■□□□ 1.06
CLN3-207ENST00000395653 CCHCR1Q8TD31 782 aa21.69■■□□□ 1.06
CLN3-207ENST00000395653 SETD7Q8WTS6 366 aaKnown RBP21.69■■□□□ 1.06
CLN3-207ENST00000395653 C1orf54Q8WWF1 131 aa21.69■■□□□ 1.06
CLN3-207ENST00000395653 RTP4Q96DX8 246 aa21.69■■□□□ 1.06
CLN3-207ENST00000395653 FSD1LQ9BXM9 530 aa21.69■■□□□ 1.06
CLN3-207ENST00000395653 WDR26Q9H7D7 661 aa21.69■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms