RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 MALT1Q9UDY8 824 aa11.86□□□□□ -0.51
SYNPO-202ENST00000394243 ABCC3O15438 1527 aa11.86□□□□□ -0.51
SYNPO-202ENST00000394243 IFNA7P01567 189 aa11.86□□□□□ -0.51
SYNPO-202ENST00000394243 NCK1P16333 377 aa11.86□□□□□ -0.51
SYNPO-202ENST00000394243 RGS1Q08116 209 aa11.86□□□□□ -0.51
SYNPO-202ENST00000394243 REP15Q6BDI9 236 aa11.86□□□□□ -0.51
SYNPO-202ENST00000394243 STK40Q8N2I9 435 aa11.86□□□□□ -0.51
SYNPO-202ENST00000394243 ZNF285Q96NJ3 590 aa11.86□□□□□ -0.51
SYNPO-202ENST00000394243 TEFMQ96QE5 360 aaKnown RBP11.86□□□□□ -0.51
SYNPO-202ENST00000394243 KAT8Q9H7Z6 458 aaKnown RBP11.86□□□□□ -0.51
SYNPO-202ENST00000394243 RNASEH1O60930 286 aaKnown RBP11.86□□□□□ -0.51
SYNPO-202ENST00000394243 CCNYL3P0C7X3 344 aa11.86□□□□□ -0.51
SYNPO-202ENST00000394243 CSH1P0DML2 217 aa11.86□□□□□ -0.51
SYNPO-202ENST00000394243 CSH2P0DML3 217 aa11.86□□□□□ -0.51
SYNPO-202ENST00000394243 BUD31P41223 144 aaPredicted RBP11.86□□□□□ -0.51
SYNPO-202ENST00000394243 BNIP3Q12983 259 aa11.86□□□□□ -0.51
SYNPO-202ENST00000394243 SEMA5AQ13591 1074 aa11.86□□□□□ -0.51
SYNPO-202ENST00000394243 C2orf69Q8N8R5 385 aa11.86□□□□□ -0.51
SYNPO-202ENST00000394243 GPR156Q8NFN8 814 aa11.86□□□□□ -0.51
SYNPO-202ENST00000394243 LENG8Q96PV6 779 aaPredicted RBP11.86□□□□□ -0.51
SYNPO-202ENST00000394243 RNF157Q96PX1 679 aa11.86□□□□□ -0.51
SYNPO-202ENST00000394243 STOX2Q9P2F5 926 aaPredicted RBP11.86□□□□□ -0.51
SYNPO-202ENST00000394243 CDC42BPBQ9Y5S2 1711 aa11.86□□□□□ -0.51
SYNPO-202ENST00000394243 hCG_1818297A0A087WSY0 165 aa11.86□□□□□ -0.51
SYNPO-202ENST00000394243 C19orf81C9J6K1 198 aa11.86□□□□□ -0.51
SYNPO-202ENST00000394243 HMGB3O15347 200 aaKnown RBP11.86□□□□□ -0.51
SYNPO-202ENST00000394243 AQP1P29972 269 aa11.86□□□□□ -0.51
SYNPO-202ENST00000394243 PPP3CAQ08209 521 aa11.86□□□□□ -0.51
SYNPO-202ENST00000394243 FAM117BQ6P1L5 589 aa11.86□□□□□ -0.51
SYNPO-202ENST00000394243 FAM171BQ6P995 826 aa11.86□□□□□ -0.51
SYNPO-202ENST00000394243 KCNK18Q7Z418 384 aa11.86□□□□□ -0.51
SYNPO-202ENST00000394243 PNPLA6Q8IY17 1366 aa11.86□□□□□ -0.51
SYNPO-202ENST00000394243 CPSF7Q8N684 471 aaKnown RBP11.86□□□□□ -0.51
SYNPO-202ENST00000394243 ELP3Q9H9T3 547 aa11.86□□□□□ -0.51
SYNPO-202ENST00000394243 HPF1Q9NWY4 346 aa11.86□□□□□ -0.51
SYNPO-202ENST00000394243 MED11Q9P086 117 aa11.86□□□□□ -0.51
SYNPO-202ENST00000394243 FSCN2O14926 492 aa11.85□□□□□ -0.51
SYNPO-202ENST00000394243 PAEPP09466 180 aa11.85□□□□□ -0.51
SYNPO-202ENST00000394243 CD86P42081 329 aa11.85□□□□□ -0.51
SYNPO-202ENST00000394243 GSCP56915 257 aaPredicted RBP11.85□□□□□ -0.51
SYNPO-202ENST00000394243 LAMTOR4Q0VGL1 99 aa11.85□□□□□ -0.51
SYNPO-202ENST00000394243 USP43Q70EL4 1123 aa11.85□□□□□ -0.51
SYNPO-202ENST00000394243 TTC29Q8NA56 475 aaPredicted RBP11.85□□□□□ -0.51
SYNPO-202ENST00000394243 ATG4CQ96DT6 458 aa11.85□□□□□ -0.51
SYNPO-202ENST00000394243 PCDHB7Q9Y5E2 793 aa11.85□□□□□ -0.51
SYNPO-202ENST00000394243 ZNF99A8MXY4 864 aaPredicted RBP11.85□□□□□ -0.51
SYNPO-202ENST00000394243 PRODHO43272 600 aa11.85□□□□□ -0.51
SYNPO-202ENST00000394243 FBXO33Q7Z6M2 555 aa11.85□□□□□ -0.51
SYNPO-202ENST00000394243 FAM156AQ8NDB6 213 aa11.85□□□□□ -0.51
SYNPO-202ENST00000394243 ATP13A1Q9HD20 1204 aa11.85□□□□□ -0.51
SYNPO-202ENST00000394243 TIMM13Q9Y5L4 95 aaPredicted RBP11.85□□□□□ -0.51
SYNPO-202ENST00000394243 CROCC2H7BZ55 1655 aa11.85□□□□□ -0.51
SYNPO-202ENST00000394243 MAP3K4Q9Y6R4 1608 aa11.85□□□□□ -0.51
SYNPO-202ENST00000394243 RPLP0P05388 317 aaKnown RBP11.85□□□□□ -0.51
SYNPO-202ENST00000394243 DCDC1P59894 354 aa11.85□□□□□ -0.51
SYNPO-202ENST00000394243 GRB14Q14449 540 aa11.85□□□□□ -0.51
SYNPO-202ENST00000394243 LRRC38Q5VT99 294 aa11.85□□□□□ -0.51
SYNPO-202ENST00000394243 SLC22A16Q86VW1 577 aa11.85□□□□□ -0.51
SYNPO-202ENST00000394243 PNPT1Q8TCS8 783 aaKnown RBP11.85□□□□□ -0.51
SYNPO-202ENST00000394243 SLC44A1Q8WWI5 657 aa11.85□□□□□ -0.51
SYNPO-202ENST00000394243 C7orf26Q96N11 449 aa11.85□□□□□ -0.51
SYNPO-202ENST00000394243 TMED5Q9Y3A6 229 aa11.85□□□□□ -0.51
SYNPO-202ENST00000394243 J3QRK9 145 aa11.85□□□□□ -0.51
SYNPO-202ENST00000394243 ENTPD3O75355 529 aa11.85□□□□□ -0.51
SYNPO-202ENST00000394243 ACADLP28330 430 aa11.85□□□□□ -0.51
SYNPO-202ENST00000394243 TAS2R41P59536 307 aa11.85□□□□□ -0.51
SYNPO-202ENST00000394243 VPS26BQ4G0F5 336 aa11.85□□□□□ -0.51
SYNPO-202ENST00000394243 SLC30A10Q6XR72 485 aa11.85□□□□□ -0.51
SYNPO-202ENST00000394243 ANKRD23Q86SG2 305 aa11.85□□□□□ -0.51
SYNPO-202ENST00000394243 FBXL8Q96CD0 374 aa11.85□□□□□ -0.51
SYNPO-202ENST00000394243 INTS7Q9NVH2 962 aaKnown RBP11.85□□□□□ -0.51
SYNPO-202ENST00000394243 POMPQ9Y244 141 aa11.85□□□□□ -0.51
SYNPO-202ENST00000394243 SALL1Q9NSC2 1324 aa11.85□□□□□ -0.51
SYNPO-202ENST00000394243 SLC9A3P48764 834 aa11.85□□□□□ -0.51
SYNPO-202ENST00000394243 AP3S2P59780 193 aa11.85□□□□□ -0.51
SYNPO-202ENST00000394243 ANO7Q6IWH7 933 aa11.85□□□□□ -0.51
SYNPO-202ENST00000394243 SLC4A11Q8NBS3 891 aa11.85□□□□□ -0.51
SYNPO-202ENST00000394243 OR4A15Q8NGL6 344 aa11.85□□□□□ -0.51
SYNPO-202ENST00000394243 ALG3Q92685 438 aa11.85□□□□□ -0.51
SYNPO-202ENST00000394243 IFT80Q9P2H3 777 aaPredicted RBP11.85□□□□□ -0.51
SYNPO-202ENST00000394243 TISP43B9A030 160 aa11.85□□□□□ -0.51
SYNPO-202ENST00000394243 H3BSA7 217 aa11.85□□□□□ -0.51
SYNPO-202ENST00000394243 CHST10O43529 356 aa11.85□□□□□ -0.51
SYNPO-202ENST00000394243 SLITRK3O94933 977 aa11.85□□□□□ -0.51
SYNPO-202ENST00000394243 OTCP00480 354 aa11.85□□□□□ -0.51
SYNPO-202ENST00000394243 LRG1P02750 347 aa11.85□□□□□ -0.51
SYNPO-202ENST00000394243 PAX3P23760 479 aa11.85□□□□□ -0.51
SYNPO-202ENST00000394243 TAS2R40P59535 323 aa11.85□□□□□ -0.51
SYNPO-202ENST00000394243 RBAK-RBAKDNI3L0D1 243 aa11.84□□□□□ -0.51
SYNPO-202ENST00000394243 POLR2JP52435 117 aaKnown RBP11.84□□□□□ -0.51
SYNPO-202ENST00000394243 ARHGAP15Q53QZ3 475 aa11.84□□□□□ -0.51
SYNPO-202ENST00000394243 HHIPL2Q6UWX4 724 aa11.84□□□□□ -0.51
SYNPO-202ENST00000394243 MPP5Q8N3R9 675 aa11.84□□□□□ -0.51
SYNPO-202ENST00000394243 TP53INP1Q96A56 240 aa11.84□□□□□ -0.51
SYNPO-202ENST00000394243 ALG2Q9H553 416 aa11.84□□□□□ -0.51
SYNPO-202ENST00000394243 SNTG2Q9NY99 539 aa11.84□□□□□ -0.51
SYNPO-202ENST00000394243 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP11.84□□□□□ -0.51
SYNPO-202ENST00000394243 AASSQ9UDR5 926 aa11.84□□□□□ -0.51
SYNPO-202ENST00000394243 FRMPD4Q14CM0 1322 aa11.84□□□□□ -0.51
SYNPO-202ENST00000394243 PLOD2O00469 737 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 74.8 ms