RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 SLC7A4O43246 635 aa9.67□□□□□ -0.86
COL6A3-204ENST00000392003 GRID2O43424 1007 aa9.67□□□□□ -0.86
COL6A3-204ENST00000392003 PAPSS2O95340 614 aaPredicted RBP9.67□□□□□ -0.86
COL6A3-204ENST00000392003 HSPA1AP0DMV8 641 aaKnown RBP9.67□□□□□ -0.86
COL6A3-204ENST00000392003 HSPA1BP0DMV9 641 aaKnown RBP9.67□□□□□ -0.86
COL6A3-204ENST00000392003 ENO3P13929 434 aaPredicted RBP9.67□□□□□ -0.86
COL6A3-204ENST00000392003 DNAJB13P59910 316 aa9.67□□□□□ -0.86
COL6A3-204ENST00000392003 GSTA3Q16772 222 aa9.67□□□□□ -0.86
COL6A3-204ENST00000392003 SLC22A9Q8IVM8 553 aa9.67□□□□□ -0.86
COL6A3-204ENST00000392003 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.67□□□□□ -0.86
COL6A3-204ENST00000392003 PSMG2Q969U7 264 aa9.67□□□□□ -0.86
COL6A3-204ENST00000392003 HIC2Q96JB3 615 aa9.67□□□□□ -0.86
COL6A3-204ENST00000392003 UXTQ9UBK9 157 aaPredicted RBP9.67□□□□□ -0.86
COL6A3-204ENST00000392003 HOXA2O43364 376 aa9.67□□□□□ -0.86
COL6A3-204ENST00000392003 SBK3P0C264 359 aa9.67□□□□□ -0.86
COL6A3-204ENST00000392003 PBX3P40426 434 aa9.67□□□□□ -0.86
COL6A3-204ENST00000392003 GATMP50440 423 aa9.67□□□□□ -0.86
COL6A3-204ENST00000392003 IL10RBQ08334 325 aa9.67□□□□□ -0.86
COL6A3-204ENST00000392003 DSC1Q08554 894 aa9.67□□□□□ -0.86
COL6A3-204ENST00000392003 MBTPS1Q14703 1052 aa9.67□□□□□ -0.86
COL6A3-204ENST00000392003 RBM20Q5T481 1227 aaKnown RBP9.67□□□□□ -0.86
COL6A3-204ENST00000392003 COLGALT2Q8IYK4 626 aa9.67□□□□□ -0.86
COL6A3-204ENST00000392003 ESX1Q8N693 406 aa9.67□□□□□ -0.86
COL6A3-204ENST00000392003 EFCAB3Q8N7B9 438 aa9.67□□□□□ -0.86
COL6A3-204ENST00000392003 STON2Q8WXE9 905 aa9.67□□□□□ -0.86
COL6A3-204ENST00000392003 FATE1Q969F0 183 aa9.67□□□□□ -0.86
COL6A3-204ENST00000392003 PPP2R3CQ969Q6 453 aa9.67□□□□□ -0.86
COL6A3-204ENST00000392003 HDAC10Q969S8 669 aa9.67□□□□□ -0.86
COL6A3-204ENST00000392003 ZNF419Q96HQ0 510 aaPredicted RBP9.67□□□□□ -0.86
COL6A3-204ENST00000392003 SCLYQ96I15 445 aa9.67□□□□□ -0.86
COL6A3-204ENST00000392003 UNC93B1Q9H1C4 597 aa9.67□□□□□ -0.86
COL6A3-204ENST00000392003 VWA7Q9Y334 891 aa9.67□□□□□ -0.86
COL6A3-204ENST00000392003 TARM1B6A8C7 271 aa9.66□□□□□ -0.86
COL6A3-204ENST00000392003 ENPP3O14638 875 aa9.66□□□□□ -0.86
COL6A3-204ENST00000392003 CNTN5O94779 1100 aa9.66□□□□□ -0.86
COL6A3-204ENST00000392003 HAPLN1P10915 354 aaPredicted RBP9.66□□□□□ -0.86
COL6A3-204ENST00000392003 OR1E1P30953 314 aa9.66□□□□□ -0.86
COL6A3-204ENST00000392003 ALDH7A1P49419 539 aaKnown RBP9.66□□□□□ -0.86
COL6A3-204ENST00000392003 NUMBP49757 651 aa9.66□□□□□ -0.86
COL6A3-204ENST00000392003 CSRP3P50461 194 aa9.66□□□□□ -0.86
COL6A3-204ENST00000392003 YBEYP58557 167 aaPredicted RBP9.66□□□□□ -0.86
COL6A3-204ENST00000392003 MSLNQ13421 630 aaPredicted RBP9.66□□□□□ -0.86
COL6A3-204ENST00000392003 HERC3Q15034 1050 aa9.66□□□□□ -0.86
COL6A3-204ENST00000392003 MAPRE2Q15555 327 aa9.66□□□□□ -0.86
COL6A3-204ENST00000392003 PARP15Q460N3 678 aa9.66□□□□□ -0.86
COL6A3-204ENST00000392003 ALFQ53S48 1182 aa9.66□□□□□ -0.86
COL6A3-204ENST00000392003 HECTD2Q5U5R9 776 aa9.66□□□□□ -0.86
COL6A3-204ENST00000392003 FBXL22Q6P050 247 aa9.66□□□□□ -0.86
COL6A3-204ENST00000392003 ANKRD13BQ86YJ7 626 aa9.66□□□□□ -0.86
COL6A3-204ENST00000392003 TMEM151BQ8IW70 566 aa9.66□□□□□ -0.86
COL6A3-204ENST00000392003 FAM20CQ8IXL6 584 aa9.66□□□□□ -0.86
COL6A3-204ENST00000392003 DSELQ8IZU8 1212 aa9.66□□□□□ -0.86
COL6A3-204ENST00000392003 TMEM151AQ8N4L1 468 aa9.66□□□□□ -0.86
COL6A3-204ENST00000392003 TXNDC5Q8NBS9 432 aaKnown RBP9.66□□□□□ -0.86
COL6A3-204ENST00000392003 CDRT15Q96T59 188 aa9.66□□□□□ -0.86
COL6A3-204ENST00000392003 DDX50Q9BQ39 737 aaKnown RBP9.66□□□□□ -0.86
COL6A3-204ENST00000392003 NOL6Q9H6R4 1146 aaKnown RBP9.66□□□□□ -0.86
COL6A3-204ENST00000392003 PRDM5Q9NQX1 630 aaPredicted RBP9.66□□□□□ -0.86
COL6A3-204ENST00000392003 RBMX2Q9Y388 322 aaKnown RBP9.66□□□□□ -0.86
COL6A3-204ENST00000392003 DNAH12Q6ZR08 3092 aa9.66□□□□□ -0.86
COL6A3-204ENST00000392003 CENPFP49454 3210 aa9.66□□□□□ -0.86
COL6A3-204ENST00000392003 IPO13O94829 963 aaKnown RBP9.66□□□□□ -0.86
COL6A3-204ENST00000392003 LEPRP48357 1165 aaKnown RBP9.66□□□□□ -0.86
COL6A3-204ENST00000392003 KPNA1P52294 538 aaPredicted RBP9.66□□□□□ -0.86
COL6A3-204ENST00000392003 BTKQ06187 659 aa9.66□□□□□ -0.86
COL6A3-204ENST00000392003 DLG1Q12959 904 aa9.66□□□□□ -0.86
COL6A3-204ENST00000392003 TAF10Q12962 218 aa9.66□□□□□ -0.86
COL6A3-204ENST00000392003 CCNIQ14094 377 aa9.66□□□□□ -0.86
COL6A3-204ENST00000392003 TRIP10Q15642 601 aa9.66□□□□□ -0.86
COL6A3-204ENST00000392003 LRRC36Q1X8D7 754 aa9.66□□□□□ -0.86
COL6A3-204ENST00000392003 MMEL1Q495T6 779 aa9.66□□□□□ -0.86
COL6A3-204ENST00000392003 RASIP1Q5U651 963 aa9.66□□□□□ -0.86
COL6A3-204ENST00000392003 LHX8Q68G74 356 aa9.66□□□□□ -0.86
COL6A3-204ENST00000392003 MRNIPQ6NTE8 343 aa9.66□□□□□ -0.86
COL6A3-204ENST00000392003 C11orf74Q86VG3 221 aa9.66□□□□□ -0.86
COL6A3-204ENST00000392003 MFSD6LQ8IWD5 586 aa9.66□□□□□ -0.86
COL6A3-204ENST00000392003 CPSF7Q8N684 471 aaKnown RBP9.66□□□□□ -0.86
COL6A3-204ENST00000392003 RCN3Q96D15 328 aa9.66□□□□□ -0.86
COL6A3-204ENST00000392003 GPR78Q96P69 363 aa9.66□□□□□ -0.86
COL6A3-204ENST00000392003 PHF12Q96QT6 1004 aa9.66□□□□□ -0.86
COL6A3-204ENST00000392003 KLHL4Q9C0H6 718 aa9.66□□□□□ -0.86
COL6A3-204ENST00000392003 POLR1EQ9GZS1 481 aaKnown RBP9.66□□□□□ -0.86
COL6A3-204ENST00000392003 TUBA8Q9NY65 449 aaPredicted RBP9.66□□□□□ -0.86
COL6A3-204ENST00000392003 SOAT2O75908 522 aa9.66□□□□□ -0.86
COL6A3-204ENST00000392003 GLP2RO95838 553 aa9.66□□□□□ -0.86
COL6A3-204ENST00000392003 TBX18O95935 607 aa9.66□□□□□ -0.86
COL6A3-204ENST00000392003 SLC4A1P02730 911 aa9.66□□□□□ -0.86
COL6A3-204ENST00000392003 UBL4AP11441 157 aa9.66□□□□□ -0.86
COL6A3-204ENST00000392003 HNRNPLP14866 589 aaKnown RBP eCLIP9.66□□□□□ -0.86
COL6A3-204ENST00000392003 RAG1P15918 1043 aa9.66□□□□□ -0.86
COL6A3-204ENST00000392003 HOXB8P17481 243 aaPredicted RBP9.66□□□□□ -0.86
COL6A3-204ENST00000392003 PRMT2P55345 433 aa9.66□□□□□ -0.86
COL6A3-204ENST00000392003 ELAVL2Q12926 359 aaKnown RBP9.66□□□□□ -0.86
COL6A3-204ENST00000392003 FLOT2Q14254 428 aa9.66□□□□□ -0.86
COL6A3-204ENST00000392003 ACAP2Q15057 778 aa9.66□□□□□ -0.86
COL6A3-204ENST00000392003 GRAMD1BQ3KR37 738 aa9.66□□□□□ -0.86
COL6A3-204ENST00000392003 TECRLQ5HYJ1 363 aa9.66□□□□□ -0.86
COL6A3-204ENST00000392003 FAM45BPQ6NSW5 357 aa9.66□□□□□ -0.86
COL6A3-204ENST00000392003 RAB44Q7Z6P3 723 aaPredicted RBP9.66□□□□□ -0.86
COL6A3-204ENST00000392003 GRAMD2AQ8IUY3 354 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms