RNA–Protein interactions for RNA: ENST00000376709.8

VSX1-202, Transcript of visual system homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VSX1, Length 2,192 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-202ENST00000376709 SNX32Q86XE0 403 aa20.24■□□□□ 0.83
VSX1-202ENST00000376709 MYLK4Q86YV6 388 aaPredicted RBP20.24■□□□□ 0.83
VSX1-202ENST00000376709 MAB21L3Q8N8X9 362 aa20.24■□□□□ 0.83
VSX1-202ENST00000376709 TMEM169Q96HH4 297 aa20.24■□□□□ 0.83
VSX1-202ENST00000376709 CDKN2AIPNLQ96HQ2 116 aa20.24■□□□□ 0.83
VSX1-202ENST00000376709 MYCBPQ99417 103 aaPredicted RBP20.24■□□□□ 0.83
VSX1-202ENST00000376709 MTF2Q9Y483 593 aaPredicted RBP20.24■□□□□ 0.83
VSX1-202ENST00000376709 ARIH1Q9Y4X5 557 aaPredicted RBP20.24■□□□□ 0.83
VSX1-202ENST00000376709 AIM2O14862 343 aa20.24■□□□□ 0.83
VSX1-202ENST00000376709 SLC22A2O15244 555 aa20.24■□□□□ 0.83
VSX1-202ENST00000376709 CCNT2O60583 730 aaKnown RBP20.24■□□□□ 0.83
VSX1-202ENST00000376709 SKAP2O75563 359 aaPredicted RBP20.24■□□□□ 0.83
VSX1-202ENST00000376709 WISP3O95389 354 aaPredicted RBP20.24■□□□□ 0.83
VSX1-202ENST00000376709 NUDT2P50583 147 aa20.24■□□□□ 0.83
VSX1-202ENST00000376709 SULT2A1Q06520 285 aa20.24■□□□□ 0.83
VSX1-202ENST00000376709 PPM1LQ5SGD2 360 aa20.24■□□□□ 0.83
VSX1-202ENST00000376709 RPS27LQ71UM5 84 aaKnown RBP20.24■□□□□ 0.83
VSX1-202ENST00000376709 ISCA2Q86U28 154 aa20.24■□□□□ 0.83
VSX1-202ENST00000376709 RYBPQ8N488 228 aaPredicted RBP20.24■□□□□ 0.83
VSX1-202ENST00000376709 SH3RF2Q8TEC5 729 aa20.24■□□□□ 0.83
VSX1-202ENST00000376709 TOP1MTQ969P6 601 aa20.24■□□□□ 0.83
VSX1-202ENST00000376709 MARK4Q96L34 752 aa20.24■□□□□ 0.83
VSX1-202ENST00000376709 DDX50Q9BQ39 737 aaKnown RBP20.24■□□□□ 0.83
VSX1-202ENST00000376709 CXorf56Q9H5V9 222 aa20.24■□□□□ 0.83
VSX1-202ENST00000376709 NLE1Q9NVX2 485 aaPredicted RBP20.24■□□□□ 0.83
VSX1-202ENST00000376709 TBC1D30Q9Y2I9 924 aa20.24■□□□□ 0.83
VSX1-202ENST00000376709 SPO11Q9Y5K1 396 aa20.24■□□□□ 0.83
VSX1-202ENST00000376709 C1RP00736 705 aa20.23■□□□□ 0.83
VSX1-202ENST00000376709 CR2P20023 1033 aa20.23■□□□□ 0.83
VSX1-202ENST00000376709 CYLC2Q14093 348 aaPredicted RBP20.23■□□□□ 0.83
VSX1-202ENST00000376709 C1orf53Q5VUE5 145 aa20.23■□□□□ 0.83
VSX1-202ENST00000376709 CUZD1Q86UP6 607 aa20.23■□□□□ 0.83
VSX1-202ENST00000376709 CPSF7Q8N684 471 aaKnown RBP20.23■□□□□ 0.83
VSX1-202ENST00000376709 PPFIBP2Q8ND30 876 aa20.23■□□□□ 0.83
VSX1-202ENST00000376709 OR4K2Q8NGD2 314 aa20.23■□□□□ 0.83
VSX1-202ENST00000376709 RP9Q8TA86 221 aaKnown RBP20.23■□□□□ 0.83
VSX1-202ENST00000376709 WBP2Q969T9 261 aa20.23■□□□□ 0.83
VSX1-202ENST00000376709 FAM136AQ96C01 138 aa20.23■□□□□ 0.83
VSX1-202ENST00000376709 TRMT2BQ96GJ1 504 aaKnown RBP20.23■□□□□ 0.83
VSX1-202ENST00000376709 FAR2Q96K12 515 aa20.23■□□□□ 0.83
VSX1-202ENST00000376709 NSMCE3Q96MG7 304 aa20.23■□□□□ 0.83
VSX1-202ENST00000376709 KLF16Q9BXK1 252 aaPredicted RBP20.23■□□□□ 0.83
VSX1-202ENST00000376709 TDRD1Q9BXT4 1180 aaKnown RBP20.23■□□□□ 0.83
VSX1-202ENST00000376709 UBA6A0AVT1 1052 aaPredicted RBP20.22■□□□□ 0.83
VSX1-202ENST00000376709 C2orf81A6NN90 581 aa20.22■□□□□ 0.83
VSX1-202ENST00000376709 CLTBP09497 229 aa20.22■□□□□ 0.83
VSX1-202ENST00000376709 SP100P23497 879 aaPredicted RBP20.22■□□□□ 0.83
VSX1-202ENST00000376709 ZNF140P52738 457 aaPredicted RBP20.22■□□□□ 0.83
VSX1-202ENST00000376709 DSG1Q02413 1049 aa20.22■□□□□ 0.83
VSX1-202ENST00000376709 PDAP1Q13442 181 aaKnown RBP20.22■□□□□ 0.83
VSX1-202ENST00000376709 CYTH1Q15438 398 aa20.22■□□□□ 0.83
VSX1-202ENST00000376709 PGM2L1Q6PCE3 622 aa20.22■□□□□ 0.83
VSX1-202ENST00000376709 HERC6Q8IVU3 1022 aa20.22■□□□□ 0.83
VSX1-202ENST00000376709 LPCAT1Q8NF37 534 aa20.22■□□□□ 0.83
VSX1-202ENST00000376709 EXT2Q93063 718 aa20.22■□□□□ 0.83
VSX1-202ENST00000376709 ZNF558Q96NG5 402 aa20.22■□□□□ 0.83
VSX1-202ENST00000376709 PCDHGC4Q9Y5F7 938 aa20.22■□□□□ 0.83
VSX1-202ENST00000376709 ANKRD36A6QL64 1941 aa20.22■□□□□ 0.83
VSX1-202ENST00000376709 ANAPC1Q9H1A4 1944 aa20.22■□□□□ 0.83
VSX1-202ENST00000376709 SCAMP3O14828 347 aaKnown RBP20.22■□□□□ 0.83
VSX1-202ENST00000376709 SMIM24O75264 130 aa20.22■□□□□ 0.83
VSX1-202ENST00000376709 PRSS56P0CW18 603 aa20.22■□□□□ 0.83
VSX1-202ENST00000376709 MBL2P11226 248 aaPredicted RBP20.22■□□□□ 0.83
VSX1-202ENST00000376709 ANPEPP15144 967 aa20.22■□□□□ 0.83
VSX1-202ENST00000376709 CD1EP15812 388 aa20.22■□□□□ 0.83
VSX1-202ENST00000376709 ZNF37AP17032 561 aaPredicted RBP20.22■□□□□ 0.83
VSX1-202ENST00000376709 ATP6V1C1P21283 382 aa20.22■□□□□ 0.83
VSX1-202ENST00000376709 CES1P23141 567 aa20.22■□□□□ 0.83
VSX1-202ENST00000376709 ADSLP30566 484 aaPredicted RBP20.22■□□□□ 0.83
VSX1-202ENST00000376709 BTKQ06187 659 aa20.22■□□□□ 0.83
VSX1-202ENST00000376709 TWF1Q12792 350 aa20.22■□□□□ 0.83
VSX1-202ENST00000376709 TAF1AQ15573 450 aaPredicted RBP20.22■□□□□ 0.83
VSX1-202ENST00000376709 CXorf57Q6NSI4 855 aaKnown RBP20.22■□□□□ 0.83
VSX1-202ENST00000376709 SLC39A11Q8N1S5 342 aa20.22■□□□□ 0.83
VSX1-202ENST00000376709 FBXW8Q8N3Y1 598 aa20.22■□□□□ 0.83
VSX1-202ENST00000376709 CEP70Q8NHQ1 597 aa20.22■□□□□ 0.83
VSX1-202ENST00000376709 PTERQ96BW5 349 aa20.22■□□□□ 0.83
VSX1-202ENST00000376709 ZNF333Q96JL9 665 aa20.22■□□□□ 0.83
VSX1-202ENST00000376709 TTC1Q99614 292 aa20.22■□□□□ 0.83
VSX1-202ENST00000376709 ZNF385DQ9H6B1 395 aa20.22■□□□□ 0.83
VSX1-202ENST00000376709 TRPC7Q9HCX4 862 aa20.22■□□□□ 0.83
VSX1-202ENST00000376709 INTS10Q9NVR2 710 aaKnown RBP20.22■□□□□ 0.83
VSX1-202ENST00000376709 H0Y626 953 aa20.21■□□□□ 0.83
VSX1-202ENST00000376709 SDHDO14521 159 aa20.21■□□□□ 0.83
VSX1-202ENST00000376709 FKBP6O75344 327 aa20.21■□□□□ 0.83
VSX1-202ENST00000376709 SUPT7LO94864 414 aa20.21■□□□□ 0.83
VSX1-202ENST00000376709 SORBS2O94875 1100 aaKnown RBP20.21■□□□□ 0.83
VSX1-202ENST00000376709 LUC7L3O95232 432 aaKnown RBP20.21■□□□□ 0.83
VSX1-202ENST00000376709 PDHA1P08559 390 aa20.21■□□□□ 0.83
VSX1-202ENST00000376709 CD1DP15813 335 aa20.21■□□□□ 0.83
VSX1-202ENST00000376709 IMPDH1P20839 514 aa20.21■□□□□ 0.83
VSX1-202ENST00000376709 ITGB8P26012 769 aa20.21■□□□□ 0.83
VSX1-202ENST00000376709 ABL2P42684 1182 aa20.21■□□□□ 0.83
VSX1-202ENST00000376709 KCNC1P48547 511 aa20.21■□□□□ 0.83
VSX1-202ENST00000376709 TYSND1Q2T9J0 566 aa20.21■□□□□ 0.83
VSX1-202ENST00000376709 TCHHL1Q5QJ38 904 aaPredicted RBP20.21■□□□□ 0.83
VSX1-202ENST00000376709 AFTPHQ6ULP2 937 aa20.21■□□□□ 0.83
VSX1-202ENST00000376709 LINGO4Q6UY18 593 aa20.21■□□□□ 0.83
VSX1-202ENST00000376709 HPS6Q86YV9 775 aa20.21■□□□□ 0.83
VSX1-202ENST00000376709 MDGA1Q8NFP4 955 aa20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms