RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 DUX4L7P0CJ90 424 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 ACADLP28330 430 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 MSX1P28360 303 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 HTR7P34969 479 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 MPLP40238 635 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 PTGER2P43116 358 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 TUBP50607 506 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 SLC3A1Q07837 685 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 LGALS3BPQ08380 585 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 TROAPQ12815 778 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 CYP27C1Q4G0S4 372 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 BRMS1LQ5PSV4 323 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 BTNL9Q6UXG8 535 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 RPTNQ6XPR3 784 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 MTERF4Q7Z6M4 381 aaKnown RBP4.1□□□□□ -1.75
USH2A-202ENST00000366942 ECHDC2Q86YB7 292 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 CCDC116Q8IYX3 515 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 NXPE1Q8N323 547 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 OR5T3Q8NGG3 340 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 OR11L1Q8NGX0 322 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 ZNF461Q8TAF7 563 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 GPBAR1Q8TDU6 330 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 AZIN2Q96A70 460 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 CEP295NLQ96MC4 621 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 TBL1XR1Q9BZK7 514 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 SLC19A3Q9BZV2 496 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 TRIM9Q9C026 710 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 PRDM8Q9NQV8 689 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 GEMIN8Q9NWZ8 242 aaKnown RBP4.1□□□□□ -1.75
USH2A-202ENST00000366942 DUX4Q9UBX2 424 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 TRPS1Q9UHF7 1281 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 POLG2Q9UHN1 485 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 AURKCQ9UQB9 309 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 BACE2Q9Y5Z0 518 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 ISPDA4D126 451 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 TRIM13O60858 407 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 RBMXL2O75526 392 aaKnown RBP4.1□□□□□ -1.75
USH2A-202ENST00000366942 SOX30O94993 753 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 CTSAP10619 480 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 BDNFP23560 247 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 CD38P28907 300 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 GCH1P30793 250 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 SERPINF1P36955 418 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 RABGGTBP53611 331 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 SLC26A5P58743 744 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 CAV1Q03135 178 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 ZNF33AQ06730 810 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 CSHL1Q14406 222 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 SHHQ15465 462 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 FAM153CQ494X1 144 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 ANKRD54Q6NXT1 300 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 MSANTD2Q6P1R3 559 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 SSX8Q7RTT4 187 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 THAP5Q7Z6K1 395 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 RNF10Q8N5U6 811 aaKnown RBP4.1□□□□□ -1.75
USH2A-202ENST00000366942 TC2NQ8N9U0 490 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 RBBP8NLQ8NC74 664 aaPredicted RBP4.1□□□□□ -1.75
USH2A-202ENST00000366942 MDGA1Q8NFP4 955 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 OR8K1Q8NGG5 319 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 DAZLQ92904 295 aaKnown RBP4.1□□□□□ -1.75
USH2A-202ENST00000366942 HHIPQ96QV1 700 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 GAL3ST4Q96RP7 486 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 NAA11Q9BSU3 229 aaPredicted RBP4.1□□□□□ -1.75
USH2A-202ENST00000366942 TPSD1Q9BZJ3 242 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 ZYG11BQ9C0D3 744 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 ARRDC1-AS1Q9H2J1 176 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 C12orf65Q9H3J6 166 aaKnown RBP4.1□□□□□ -1.75
USH2A-202ENST00000366942 OCEL1Q9H607 264 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 IL21RQ9HBE5 538 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 PIH1D3Q9NQM4 214 aaKnown RBP4.1□□□□□ -1.75
USH2A-202ENST00000366942 SEMA3GQ9NS98 782 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 PCSK1NQ9UHG2 260 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 MKL2Q9ULH7 1088 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 TTC7AQ9ULT0 858 aaPredicted RBP4.1□□□□□ -1.75
USH2A-202ENST00000366942 ASTN2O75129 1339 aaPredicted RBP4.1□□□□□ -1.75
USH2A-202ENST00000366942 PRR36Q9H6K5 1346 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 MYO9BQ13459 2157 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 PLSCR5A0PG75 271 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 C2orf72A6NCS6 295 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 SOBPA7XYQ1 873 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 SCAMP1O15126 338 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 FOXP2O15409 715 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 ZNF208O43345 1280 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 PRKAB2O43741 272 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 PLA2G6O60733 806 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 ACTL6BO94805 426 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 CLUP10909 449 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 HRH2P25021 359 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 FPR2P25090 351 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 ACOT2P49753 483 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 CYP4F2P78329 520 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 CYP4F3Q08477 520 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 ART3Q13508 389 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 EFR3AQ14156 821 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 PGM5Q15124 567 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 CDKL4Q5MAI5 379 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 TMEM201Q5SNT2 666 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 COL13A1Q5TAT6 717 aaPredicted RBP4.1□□□□□ -1.75
USH2A-202ENST00000366942 ISM2Q6H9L7 571 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 FAM109BQ6ICB4 259 aaPredicted RBP4.1□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms