RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 RAD51Q06609 339 aa11.26□□□□□ -0.61
RTN3-204ENST00000354497 BRD3Q15059 726 aa11.26□□□□□ -0.61
RTN3-204ENST00000354497 ZRSR2Q15696 482 aaKnown RBP11.26□□□□□ -0.61
RTN3-204ENST00000354497 ATP1A1-AS1Q5TC04 95 aa11.26□□□□□ -0.61
RTN3-204ENST00000354497 ZNF658Q5TYW1 1059 aaPredicted RBP11.26□□□□□ -0.61
RTN3-204ENST00000354497 OGFOD3Q6PK18 319 aa11.26□□□□□ -0.61
RTN3-204ENST00000354497 KDELC2Q7Z4H8 507 aa11.26□□□□□ -0.61
RTN3-204ENST00000354497 UNC5BQ8IZJ1 945 aa11.26□□□□□ -0.61
RTN3-204ENST00000354497 WDTC1Q8N5D0 677 aa11.26□□□□□ -0.61
RTN3-204ENST00000354497 OR56A4Q8NGH8 313 aa11.26□□□□□ -0.61
RTN3-204ENST00000354497 CCL4L1Q8NHW4 92 aa11.26□□□□□ -0.61
RTN3-204ENST00000354497 HAPLN3Q96S86 360 aa11.26□□□□□ -0.61
RTN3-204ENST00000354497 NPY6RQ99463 290 aa11.26□□□□□ -0.61
RTN3-204ENST00000354497 TMEM168Q9H0V1 697 aa11.26□□□□□ -0.61
RTN3-204ENST00000354497 GOLPH3LQ9H4A5 285 aa11.26□□□□□ -0.61
RTN3-204ENST00000354497 RRN3Q9NYV6 651 aa11.26□□□□□ -0.61
RTN3-204ENST00000354497 CPSF2Q9P2I0 782 aaKnown RBP11.26□□□□□ -0.61
RTN3-204ENST00000354497 DNAI1Q9UI46 699 aa11.26□□□□□ -0.61
RTN3-204ENST00000354497 HPCAL4Q9UM19 191 aa11.26□□□□□ -0.61
RTN3-204ENST00000354497 CNTN6Q9UQ52 1028 aa11.26□□□□□ -0.61
RTN3-204ENST00000354497 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.26□□□□□ -0.613e-6■■■□□ 16.3
RTN3-204ENST00000354497 USP9YO00507 2555 aaPredicted RBP11.25□□□□□ -0.61
RTN3-204ENST00000354497 IGLV3-10A0A075B6K4 115 aa11.25□□□□□ -0.61
RTN3-204ENST00000354497 TMEM202A6NGA9 273 aa11.25□□□□□ -0.61
RTN3-204ENST00000354497 EFCAB7A8K855 629 aa11.25□□□□□ -0.61
RTN3-204ENST00000354497 PMM2O15305 246 aa11.25□□□□□ -0.61
RTN3-204ENST00000354497 P4HA2O15460 535 aa11.25□□□□□ -0.61
RTN3-204ENST00000354497 CAPN5O15484 640 aaPredicted RBP11.25□□□□□ -0.61
RTN3-204ENST00000354497 ZW10O43264 779 aa11.25□□□□□ -0.61
RTN3-204ENST00000354497 NUDT21O43809 227 aaKnown RBP11.25□□□□□ -0.61
RTN3-204ENST00000354497 ZNF202O95125 648 aa11.25□□□□□ -0.61
RTN3-204ENST00000354497 IGSF6O95976 241 aa11.25□□□□□ -0.61
RTN3-204ENST00000354497 TIMP2P16035 220 aa11.25□□□□□ -0.61
RTN3-204ENST00000354497 ETFBP38117 255 aa11.25□□□□□ -0.61
RTN3-204ENST00000354497 CD97P48960 835 aa11.25□□□□□ -0.61
RTN3-204ENST00000354497 SNX16P57768 344 aa11.25□□□□□ -0.61
RTN3-204ENST00000354497 ELP6Q0PNE2 266 aa11.25□□□□□ -0.61
RTN3-204ENST00000354497 PKP1Q13835 747 aa11.25□□□□□ -0.61
RTN3-204ENST00000354497 TUBB8Q3ZCM7 444 aa11.25□□□□□ -0.61
RTN3-204ENST00000354497 TMEM52BQ4KMG9 183 aa11.25□□□□□ -0.61
RTN3-204ENST00000354497 FILIP1LQ4L180 1135 aa11.25□□□□□ -0.61
RTN3-204ENST00000354497 DCAF12Q5T6F0 453 aa11.25□□□□□ -0.61
RTN3-204ENST00000354497 NKAIN2Q5VXU1 208 aa11.25□□□□□ -0.61
RTN3-204ENST00000354497 RWDD4Q6NW29 188 aaKnown RBP11.25□□□□□ -0.61
RTN3-204ENST00000354497 GJB7Q6PEY0 223 aa11.25□□□□□ -0.61
RTN3-204ENST00000354497 FOXR2Q6PJQ5 311 aa11.25□□□□□ -0.61
RTN3-204ENST00000354497 SLC26A9Q7LBE3 791 aa11.25□□□□□ -0.61
RTN3-204ENST00000354497 CCDC50Q8IVM0 306 aa11.25□□□□□ -0.61
RTN3-204ENST00000354497 AGBL5Q8NDL9 886 aa11.25□□□□□ -0.61
RTN3-204ENST00000354497 SLC45A3Q96JT2 553 aa11.25□□□□□ -0.61
RTN3-204ENST00000354497 CABS1Q96KC9 395 aa11.25□□□□□ -0.61
RTN3-204ENST00000354497 C1orf74Q96LT6 269 aa11.25□□□□□ -0.61
RTN3-204ENST00000354497 GDAP1L1Q96MZ0 367 aa11.25□□□□□ -0.61
RTN3-204ENST00000354497 CYP4F12Q9HCS2 524 aa11.25□□□□□ -0.61
RTN3-204ENST00000354497 FGF22Q9HCT0 170 aa11.25□□□□□ -0.61
RTN3-204ENST00000354497 PLCB1Q9NQ66 1216 aa11.25□□□□□ -0.61
RTN3-204ENST00000354497 PCDHGA3Q9Y5H0 932 aa11.25□□□□□ -0.61
RTN3-204ENST00000354497 LRRK1Q38SD2 2015 aa11.24□□□□□ -0.61
RTN3-204ENST00000354497 LOC101059948A0A1B0GTJ6 334 aa11.24□□□□□ -0.61
RTN3-204ENST00000354497 CCDC151A5D8V7 595 aa11.24□□□□□ -0.61
RTN3-204ENST00000354497 BUB1O43683 1085 aa11.24□□□□□ -0.61
RTN3-204ENST00000354497 PIGNO95427 931 aa11.24□□□□□ -0.61
RTN3-204ENST00000354497 F9P00740 461 aa11.24□□□□□ -0.61
RTN3-204ENST00000354497 LMAN1P49257 510 aa11.24□□□□□ -0.61
RTN3-204ENST00000354497 RHOAP61586 193 aa11.24□□□□□ -0.61
RTN3-204ENST00000354497 MTM1Q13496 603 aa11.24□□□□□ -0.61
RTN3-204ENST00000354497 STIM1Q13586 685 aa11.24□□□□□ -0.61
RTN3-204ENST00000354497 PTPN20Q4JDL3 420 aa11.24□□□□□ -0.61
RTN3-204ENST00000354497 CFAP58Q5T655 872 aa11.24□□□□□ -0.61
RTN3-204ENST00000354497 ANKS6Q68DC2 871 aa11.24□□□□□ -0.61
RTN3-204ENST00000354497 ZNF787Q6DD87 383 aa11.24□□□□□ -0.61
RTN3-204ENST00000354497 ERAP2Q6P179 960 aa11.24□□□□□ -0.61
RTN3-204ENST00000354497 HEATR4Q86WZ0 1026 aa11.24□□□□□ -0.61
RTN3-204ENST00000354497 FAM131BQ86XD5 332 aa11.24□□□□□ -0.61
RTN3-204ENST00000354497 NLGN4XQ8N0W4 816 aa11.24□□□□□ -0.61
RTN3-204ENST00000354497 PLA2G15Q8NCC3 412 aa11.24□□□□□ -0.61
RTN3-204ENST00000354497 NLGN4YQ8NFZ3 816 aaPredicted RBP11.24□□□□□ -0.61
RTN3-204ENST00000354497 SSC4DQ8WTU2 575 aa11.24□□□□□ -0.61
RTN3-204ENST00000354497 ZDHHC1Q8WTX9 485 aa11.24□□□□□ -0.61
RTN3-204ENST00000354497 UBXN4Q92575 508 aa11.24□□□□□ -0.61
RTN3-204ENST00000354497 MRFAP1L1Q96HT8 127 aa11.24□□□□□ -0.61
RTN3-204ENST00000354497 CEP63Q96MT8 703 aa11.24□□□□□ -0.61
RTN3-204ENST00000354497 CTRCQ99895 268 aa11.24□□□□□ -0.61
RTN3-204ENST00000354497 DDA1Q9BW61 102 aa11.24□□□□□ -0.61
RTN3-204ENST00000354497 ASPSCR1Q9BZE9 553 aa11.24□□□□□ -0.61
RTN3-204ENST00000354497 IGSF5Q9NSI5 407 aa11.24□□□□□ -0.61
RTN3-204ENST00000354497 NDFIP2Q9NV92 336 aa11.24□□□□□ -0.61
RTN3-204ENST00000354497 OCIAD1Q9NX40 245 aa11.24□□□□□ -0.61
RTN3-204ENST00000354497 ZNF212Q9UDV6 495 aa11.24□□□□□ -0.61
RTN3-204ENST00000354497 VPS9D1Q9Y2B5 631 aa11.24□□□□□ -0.61
RTN3-204ENST00000354497 DGKBQ9Y6T7 804 aa11.24□□□□□ -0.61
RTN3-204ENST00000354497 SDK2Q58EX2 2172 aa11.23□□□□□ -0.61
RTN3-204ENST00000354497 FAM237AA0A1B0GTK4 181 aa11.23□□□□□ -0.61
RTN3-204ENST00000354497 PDLIM1O00151 329 aa11.23□□□□□ -0.61
RTN3-204ENST00000354497 PSMA7O14818 248 aa11.23□□□□□ -0.61
RTN3-204ENST00000354497 TMCC1O94876 653 aa11.23□□□□□ -0.61
RTN3-204ENST00000354497 PRKCGP05129 697 aa11.23□□□□□ -0.61
RTN3-204ENST00000354497 TCN2P20062 427 aa11.23□□□□□ -0.61
RTN3-204ENST00000354497 KELP23276 732 aa11.23□□□□□ -0.61
RTN3-204ENST00000354497 KRT9P35527 623 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms