RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 AP2M1Q96CW1 435 aa12.62□□□□□ -0.39
COL6A3-203ENST00000353578 RIMBP2O15034 1052 aa12.62□□□□□ -0.39
COL6A3-203ENST00000353578 MID1O15344 667 aa12.62□□□□□ -0.39
COL6A3-203ENST00000353578 CALCAP01258 141 aa12.62□□□□□ -0.39
COL6A3-203ENST00000353578 LCP1P13796 627 aa12.62□□□□□ -0.39
COL6A3-203ENST00000353578 KLK7P49862 253 aa12.62□□□□□ -0.39
COL6A3-203ENST00000353578 CPNE9Q8IYJ1 553 aa12.62□□□□□ -0.39
COL6A3-203ENST00000353578 B3GALNT2Q8NCR0 500 aa12.62□□□□□ -0.39
COL6A3-203ENST00000353578 OPTCQ9UBM4 332 aa12.62□□□□□ -0.39
COL6A3-203ENST00000353578 HSPB11Q9Y547 144 aa12.62□□□□□ -0.39
COL6A3-203ENST00000353578 A0A0A0MRY4 1105 aa12.62□□□□□ -0.39
COL6A3-203ENST00000353578 USP17L5A8MUK1 530 aa12.62□□□□□ -0.39
COL6A3-203ENST00000353578 FGF10O15520 208 aaPredicted RBP12.62□□□□□ -0.39
COL6A3-203ENST00000353578 ERN1O75460 977 aaKnown RBP12.62□□□□□ -0.39
COL6A3-203ENST00000353578 ANXA5P08758 320 aa12.62□□□□□ -0.39
COL6A3-203ENST00000353578 CD6P30203 668 aa12.62□□□□□ -0.39
COL6A3-203ENST00000353578 MAGEA3P43357 314 aa12.62□□□□□ -0.39
COL6A3-203ENST00000353578 SNAPC1Q16533 368 aa12.62□□□□□ -0.39
COL6A3-203ENST00000353578 MFSD7Q6UXD7 560 aa12.62□□□□□ -0.39
COL6A3-203ENST00000353578 IFNL1Q8IU54 200 aa12.62□□□□□ -0.39
COL6A3-203ENST00000353578 SPATA13Q96N96 652 aa12.62□□□□□ -0.39
COL6A3-203ENST00000353578 PHOX2BQ99453 314 aa12.62□□□□□ -0.39
COL6A3-203ENST00000353578 ZNF350Q9GZX5 532 aa12.62□□□□□ -0.39
COL6A3-203ENST00000353578 TFCP2L1Q9NZI6 479 aa12.62□□□□□ -0.39
COL6A3-203ENST00000353578 SAE1Q9UBE0 346 aaPredicted RBP12.62□□□□□ -0.39
COL6A3-203ENST00000353578 RPL36Q9Y3U8 105 aaKnown RBP12.62□□□□□ -0.39
COL6A3-203ENST00000353578 POLR3HQ9Y535 204 aaPredicted RBP12.62□□□□□ -0.39
COL6A3-203ENST00000353578 IFNA17P01571 189 aa12.61□□□□□ -0.39
COL6A3-203ENST00000353578 MATN1P21941 496 aa12.61□□□□□ -0.39
COL6A3-203ENST00000353578 PRMT2P55345 433 aa12.61□□□□□ -0.39
COL6A3-203ENST00000353578 IL2P60568 153 aa12.61□□□□□ -0.39
COL6A3-203ENST00000353578 CTC1Q2NKJ3 1217 aa12.61□□□□□ -0.39
COL6A3-203ENST00000353578 ANKRD13BQ86YJ7 626 aa12.61□□□□□ -0.39
COL6A3-203ENST00000353578 KIF12Q96FN5 646 aa12.61□□□□□ -0.39
COL6A3-203ENST00000353578 ZNF358Q9NW07 568 aa12.61□□□□□ -0.39
COL6A3-203ENST00000353578 DISC1C4P0D8 188 aa12.61□□□□□ -0.39
COL6A3-203ENST00000353578 OGTO15294 1046 aa12.61□□□□□ -0.39
COL6A3-203ENST00000353578 SNAP29O95721 258 aa12.61□□□□□ -0.39
COL6A3-203ENST00000353578 ALG11Q2TAA5 492 aa12.61□□□□□ -0.39
COL6A3-203ENST00000353578 TSNAXQ99598 290 aaKnown RBP12.61□□□□□ -0.39
COL6A3-203ENST00000353578 STUB1Q9UNE7 303 aa12.61□□□□□ -0.39
COL6A3-203ENST00000353578 KLF11O14901 512 aa12.61□□□□□ -0.39
COL6A3-203ENST00000353578 NPPAP01160 153 aa12.61□□□□□ -0.39
COL6A3-203ENST00000353578 BPGMP07738 259 aa12.61□□□□□ -0.39
COL6A3-203ENST00000353578 GLRA2P23416 452 aa12.61□□□□□ -0.39
COL6A3-203ENST00000353578 NTSP30990 170 aa12.61□□□□□ -0.39
COL6A3-203ENST00000353578 RAB4BP61018 213 aa12.61□□□□□ -0.39
COL6A3-203ENST00000353578 CYP4F2P78329 520 aa12.61□□□□□ -0.39
COL6A3-203ENST00000353578 CYP4F3Q08477 520 aa12.61□□□□□ -0.39
COL6A3-203ENST00000353578 ANKRD52Q8NB46 1076 aa12.61□□□□□ -0.39
COL6A3-203ENST00000353578 KAT5Q92993 513 aa12.61□□□□□ -0.39
COL6A3-203ENST00000353578 DCP1AQ9NPI6 582 aaPredicted RBP12.61□□□□□ -0.39
COL6A3-203ENST00000353578 IPO13O94829 963 aaKnown RBP12.61□□□□□ -0.39
COL6A3-203ENST00000353578 ITGA4P13612 1032 aa12.61□□□□□ -0.39
COL6A3-203ENST00000353578 S100PP25815 95 aa12.61□□□□□ -0.39
COL6A3-203ENST00000353578 DPY19L1Q2PZI1 675 aa12.61□□□□□ -0.39
COL6A3-203ENST00000353578 COL28A1Q2UY09 1125 aa12.61□□□□□ -0.39
COL6A3-203ENST00000353578 OSBPL7Q9BZF2 842 aa12.61□□□□□ -0.39
COL6A3-203ENST00000353578 ALG2Q9H553 416 aa12.61□□□□□ -0.39
COL6A3-203ENST00000353578 USP29Q9HBJ7 922 aa12.61□□□□□ -0.39
COL6A3-203ENST00000353578 TNS3Q68CZ2 1445 aa12.61□□□□□ -0.39
COL6A3-203ENST00000353578 SLC9A3R1O14745 358 aaPredicted RBP12.61□□□□□ -0.39
COL6A3-203ENST00000353578 GNAO1P09471 354 aa12.61□□□□□ -0.39
COL6A3-203ENST00000353578 ZNF7P17097 686 aaPredicted RBP12.61□□□□□ -0.39
COL6A3-203ENST00000353578 NCS1P62166 190 aa12.61□□□□□ -0.39
COL6A3-203ENST00000353578 CREMQ03060 361 aa12.61□□□□□ -0.39
COL6A3-203ENST00000353578 OVOS1Q6IE37 1185 aa12.61□□□□□ -0.39
COL6A3-203ENST00000353578 ATP6V0D2Q8N8Y2 350 aa12.61□□□□□ -0.39
COL6A3-203ENST00000353578 TTC3P53804 2025 aa12.61□□□□□ -0.39
COL6A3-203ENST00000353578 ZC3H4Q9UPT8 1303 aaKnown RBP12.61□□□□□ -0.39
COL6A3-203ENST00000353578 QSOX1O00391 747 aa12.61□□□□□ -0.39
COL6A3-203ENST00000353578 MAPK3P27361 379 aaPredicted RBP12.61□□□□□ -0.39
COL6A3-203ENST00000353578 FAAP100Q0VG06 881 aa12.61□□□□□ -0.39
COL6A3-203ENST00000353578 FSTL1Q12841 308 aa12.61□□□□□ -0.39
COL6A3-203ENST00000353578 CSHL1Q14406 222 aa12.61□□□□□ -0.39
COL6A3-203ENST00000353578 KHDC1Q4VXA5 237 aaKnown RBP12.61□□□□□ -0.39
COL6A3-203ENST00000353578 GPSM1Q86YR5 675 aa12.61□□□□□ -0.39
COL6A3-203ENST00000353578 ZBED3Q96IU2 234 aaPredicted RBP12.61□□□□□ -0.39
COL6A3-203ENST00000353578 ZNF696Q9H7X3 374 aa12.61□□□□□ -0.39
COL6A3-203ENST00000353578 FBXO6Q9NRD1 293 aaPredicted RBP12.61□□□□□ -0.39
COL6A3-203ENST00000353578 NUDT15Q9NV35 164 aa12.61□□□□□ -0.39
COL6A3-203ENST00000353578 NFAT5O94916 1531 aa12.61□□□□□ -0.39
COL6A3-203ENST00000353578 PTPRJQ12913 1337 aa12.61□□□□□ -0.39
COL6A3-203ENST00000353578 RRN3P2A6NIE6 340 aa12.61□□□□□ -0.39
COL6A3-203ENST00000353578 ACOX3O15254 700 aa12.61□□□□□ -0.39
COL6A3-203ENST00000353578 ALDH1A1P00352 501 aa12.61□□□□□ -0.39
COL6A3-203ENST00000353578 MLLT6P55198 1093 aaPredicted RBP12.61□□□□□ -0.39
COL6A3-203ENST00000353578 DEFA6Q01524 100 aa12.61□□□□□ -0.39
COL6A3-203ENST00000353578 BORAQ6PGQ7 559 aa12.61□□□□□ -0.39
COL6A3-203ENST00000353578 IL27RAQ6UWB1 636 aa12.61□□□□□ -0.39
COL6A3-203ENST00000353578 CBWD2Q8IUF1 395 aa12.61□□□□□ -0.39
COL6A3-203ENST00000353578 ADGRF4Q8IZF3 695 aa12.61□□□□□ -0.39
COL6A3-203ENST00000353578 DCSTAMPQ9H295 470 aa12.61□□□□□ -0.39
COL6A3-203ENST00000353578 DNAJC18Q9H819 358 aa12.61□□□□□ -0.39
COL6A3-203ENST00000353578 GTF2A1LQ9UNN4 478 aa12.61□□□□□ -0.39
COL6A3-203ENST00000353578 CRYL1Q9Y2S2 319 aa12.61□□□□□ -0.39
COL6A3-203ENST00000353578 RAB10P61026 200 aa12.61□□□□□ -0.39
COL6A3-203ENST00000353578 ABRQ12979 859 aa12.61□□□□□ -0.39
COL6A3-203ENST00000353578 ASTE1Q2TB18 679 aaPredicted RBP12.61□□□□□ -0.39
COL6A3-203ENST00000353578 KDELC2Q7Z4H8 507 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms