RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 SEMA5AQ13591 1074 aa14.91□□□□□ -0.02
COL17A1-201ENST00000353479 CAPRIN2Q6IMN6 1127 aaKnown RBP14.91□□□□□ -0.02
COL17A1-201ENST00000353479 ZCCHC8Q6NZY4 707 aaKnown RBP14.91□□□□□ -0.02
COL17A1-201ENST00000353479 ZBTB49Q6ZSB9 765 aa14.91□□□□□ -0.02
COL17A1-201ENST00000353479 TADA1Q96BN2 335 aa14.91□□□□□ -0.02
COL17A1-201ENST00000353479 FEM1CQ96JP0 617 aa14.91□□□□□ -0.02
COL17A1-201ENST00000353479 A0A1W2PQ67 120 aa14.91□□□□□ -0.02
COL17A1-201ENST00000353479 NTRK1P04629 796 aa14.91□□□□□ -0.02
COL17A1-201ENST00000353479 TLX1P31314 330 aaPredicted RBP14.91□□□□□ -0.02
COL17A1-201ENST00000353479 SNX30Q5VWJ9 437 aa14.91□□□□□ -0.02
COL17A1-201ENST00000353479 CRELD2Q6UXH1 353 aaPredicted RBP14.91□□□□□ -0.02
COL17A1-201ENST00000353479 RIN3Q8TB24 985 aa14.91□□□□□ -0.02
COL17A1-201ENST00000353479 FAM83DQ9H4H8 585 aa14.91□□□□□ -0.02
COL17A1-201ENST00000353479 CLDND1Q9NY35 253 aa14.91□□□□□ -0.02
COL17A1-201ENST00000353479 NR2E1Q9Y466 385 aa14.91□□□□□ -0.02
COL17A1-201ENST00000353479 ATP6AP2A0A1C7CYW4 349 aa14.91□□□□□ -0.02
COL17A1-201ENST00000353479 BIRC5O15392 142 aa14.91□□□□□ -0.02
COL17A1-201ENST00000353479 FKBP6O75344 327 aa14.91□□□□□ -0.02
COL17A1-201ENST00000353479 ATP6AP2O75787 350 aa14.91□□□□□ -0.02
COL17A1-201ENST00000353479 KCNH1O95259 989 aa14.91□□□□□ -0.02
COL17A1-201ENST00000353479 LINC00032P0C843 101 aa14.91□□□□□ -0.02
COL17A1-201ENST00000353479 ME2P23368 584 aa14.91□□□□□ -0.02
COL17A1-201ENST00000353479 IL1R2P27930 398 aa14.91□□□□□ -0.02
COL17A1-201ENST00000353479 ADCK1Q86TW2 530 aa14.91□□□□□ -0.02
COL17A1-201ENST00000353479 NIPA2Q8N8Q9 360 aa14.91□□□□□ -0.02
COL17A1-201ENST00000353479 KCTD13Q8WZ19 329 aa14.91□□□□□ -0.02
COL17A1-201ENST00000353479 KLHL32Q96NJ5 620 aa14.91□□□□□ -0.02
COL17A1-201ENST00000353479 PCDH12Q9NPG4 1184 aa14.91□□□□□ -0.02
COL17A1-201ENST00000353479 MYADML2A6NDP7 307 aa14.91□□□□□ -0.02
COL17A1-201ENST00000353479 ATG13O75143 517 aa14.91□□□□□ -0.02
COL17A1-201ENST00000353479 HGFP14210 728 aa14.91□□□□□ -0.02
COL17A1-201ENST00000353479 IYDQ6PHW0 289 aa14.91□□□□□ -0.02
COL17A1-201ENST00000353479 PHYKPLQ8IUZ5 450 aa14.91□□□□□ -0.02
COL17A1-201ENST00000353479 VMP1Q96GC9 406 aa14.91□□□□□ -0.02
COL17A1-201ENST00000353479 PPP3R2Q96LZ3 170 aa14.91□□□□□ -0.02
COL17A1-201ENST00000353479 PRKAG3Q9UGI9 489 aa14.91□□□□□ -0.02
COL17A1-201ENST00000353479 PCDHB1Q9Y5F3 818 aa14.91□□□□□ -0.02
COL17A1-201ENST00000353479 PKD1L3Q7Z443 1732 aa14.91□□□□□ -0.02
COL17A1-201ENST00000353479 ZNF865P0CJ78 1059 aaPredicted RBP14.9□□□□□ -0.02
COL17A1-201ENST00000353479 FASP25445 335 aa14.9□□□□□ -0.02
COL17A1-201ENST00000353479 HNRNPH1P31943 449 aaKnown RBP14.9□□□□□ -0.02
COL17A1-201ENST00000353479 ASTE1Q2TB18 679 aaPredicted RBP14.9□□□□□ -0.02
COL17A1-201ENST00000353479 IRAK1BP1Q5VVH5 260 aa14.9□□□□□ -0.02
COL17A1-201ENST00000353479 SERINC5Q86VE9 423 aa14.9□□□□□ -0.02
COL17A1-201ENST00000353479 ZSCAN18Q8TBC5 510 aaPredicted RBP14.9□□□□□ -0.02
COL17A1-201ENST00000353479 C1orf50Q9BV19 199 aa14.9□□□□□ -0.02
COL17A1-201ENST00000353479 OR2AG2A6NM03 316 aa14.9□□□□□ -0.02
COL17A1-201ENST00000353479 NMBRP28336 390 aa14.9□□□□□ -0.02
COL17A1-201ENST00000353479 SERPINB10P48595 397 aa14.9□□□□□ -0.02
COL17A1-201ENST00000353479 TRPC1P48995 793 aa14.9□□□□□ -0.02
COL17A1-201ENST00000353479 NAA20P61599 178 aa14.9□□□□□ -0.02
COL17A1-201ENST00000353479 SLC20A2Q08357 652 aa14.9□□□□□ -0.02
COL17A1-201ENST00000353479 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP14.9□□□□□ -0.02
COL17A1-201ENST00000353479 RERGQ96A58 199 aaPredicted RBP14.9□□□□□ -0.02
COL17A1-201ENST00000353479 RNF145Q96MT1 663 aa14.9□□□□□ -0.02
COL17A1-201ENST00000353479 ATAD3AQ9NVI7 634 aa14.9□□□□□ -0.02
COL17A1-201ENST00000353479 KCTD5Q9NXV2 234 aa14.9□□□□□ -0.02
COL17A1-201ENST00000353479 STYXL1Q9Y6J8 313 aa14.9□□□□□ -0.02
COL17A1-201ENST00000353479 UBR2Q8IWV8 1755 aa14.9□□□□□ -0.02
COL17A1-201ENST00000353479 AZIN1O14977 448 aa14.9□□□□□ -0.02
COL17A1-201ENST00000353479 FGF18O76093 207 aa14.9□□□□□ -0.02
COL17A1-201ENST00000353479 VEGFBP49765 207 aa14.9□□□□□ -0.02
COL17A1-201ENST00000353479 HTRA3P83110 453 aa14.9□□□□□ -0.02
COL17A1-201ENST00000353479 THAP11Q96EK4 314 aa14.9□□□□□ -0.02
COL17A1-201ENST00000353479 DNAJC1Q96KC8 554 aaKnown RBP14.9□□□□□ -0.02
COL17A1-201ENST00000353479 GPR21Q99679 349 aa14.9□□□□□ -0.02
COL17A1-201ENST00000353479 CD248Q9HCU0 757 aa14.9□□□□□ -0.02
COL17A1-201ENST00000353479 ADPRHL2Q9NX46 363 aa14.9□□□□□ -0.02
COL17A1-201ENST00000353479 PSME2Q9UL46 239 aa14.9□□□□□ -0.02
COL17A1-201ENST00000353479 CCDC88AQ3V6T2 1871 aa14.9□□□□□ -0.02
COL17A1-201ENST00000353479 PLCH1Q4KWH8 1693 aa14.9□□□□□ -0.02
COL17A1-201ENST00000353479 SNX3O60493 162 aa14.9□□□□□ -0.02
COL17A1-201ENST00000353479 IFNA16P05015 189 aa14.9□□□□□ -0.02
COL17A1-201ENST00000353479 FAM163BP0C2L3 166 aa14.9□□□□□ -0.02
COL17A1-201ENST00000353479 TCF4P15884 667 aa14.9□□□□□ -0.02
COL17A1-201ENST00000353479 ITPKAP23677 461 aa14.9□□□□□ -0.02
COL17A1-201ENST00000353479 LRRC73Q5JTD7 316 aa14.9□□□□□ -0.02
COL17A1-201ENST00000353479 ESRP1Q6NXG1 681 aaKnown RBP14.9□□□□□ -0.02
COL17A1-201ENST00000353479 CYP4X1Q8N118 509 aa14.9□□□□□ -0.02
COL17A1-201ENST00000353479 ZBTB2Q8N680 514 aa14.9□□□□□ -0.02
COL17A1-201ENST00000353479 SLC35F5Q8WV83 523 aa14.9□□□□□ -0.02
COL17A1-201ENST00000353479 NTAN1Q96AB6 310 aa14.9□□□□□ -0.02
COL17A1-201ENST00000353479 PHF21AQ96BD5 680 aa14.9□□□□□ -0.02
COL17A1-201ENST00000353479 SLCO1B3Q9NPD5 702 aa14.9□□□□□ -0.02
COL17A1-201ENST00000353479 EVA1BQ9NVM1 165 aa14.9□□□□□ -0.02
COL17A1-201ENST00000353479 H3BM21 787 aa14.89□□□□□ -0.03
COL17A1-201ENST00000353479 SLC28A1O00337 649 aa14.89□□□□□ -0.03
COL17A1-201ENST00000353479 ENPP3O14638 875 aa14.89□□□□□ -0.03
COL17A1-201ENST00000353479 HDAC3O15379 428 aa14.89□□□□□ -0.03
COL17A1-201ENST00000353479 ZMPSTE24O75844 475 aa14.89□□□□□ -0.03
COL17A1-201ENST00000353479 EPHA3P29320 983 aa14.89□□□□□ -0.03
COL17A1-201ENST00000353479 CRATP43155 626 aa14.89□□□□□ -0.03
COL17A1-201ENST00000353479 SAMD4BQ5PRF9 694 aaKnown RBP14.89□□□□□ -0.03
COL17A1-201ENST00000353479 C2orf73Q8N5S3 287 aaPredicted RBP14.89□□□□□ -0.03
COL17A1-201ENST00000353479 TEKT5Q96M29 485 aa14.89□□□□□ -0.03
COL17A1-201ENST00000353479 NUDT14O95848 222 aa14.89□□□□□ -0.03
COL17A1-201ENST00000353479 IMPDH2P12268 514 aa14.89□□□□□ -0.03
COL17A1-201ENST00000353479 ACADSP16219 412 aa14.89□□□□□ -0.03
COL17A1-201ENST00000353479 SQLEQ14534 574 aa14.89□□□□□ -0.03
COL17A1-201ENST00000353479 DLG2Q15700 870 aa14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms