RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 A0A1W2PPC1 479 aa8.15□□□□□ -1.11
ATG4A-201ENST00000343524 MAGEB16A2A368 324 aa8.15□□□□□ -1.11
ATG4A-201ENST00000343524 TTC24A2A3L6 582 aaPredicted RBP8.15□□□□□ -1.11
ATG4A-201ENST00000343524 TISP43B9A030 160 aa8.15□□□□□ -1.11
ATG4A-201ENST00000343524 ARHGEF9O43307 516 aa8.15□□□□□ -1.11
ATG4A-201ENST00000343524 GRID2O43424 1007 aa8.15□□□□□ -1.11
ATG4A-201ENST00000343524 NPHS1O60500 1241 aa8.15□□□□□ -1.11
ATG4A-201ENST00000343524 MRPS14O60783 128 aaKnown RBP8.15□□□□□ -1.11
ATG4A-201ENST00000343524 BBOX1O75936 387 aa8.15□□□□□ -1.11
ATG4A-201ENST00000343524 SUPT7LO94864 414 aa8.15□□□□□ -1.11
ATG4A-201ENST00000343524 ARHGEF15O94989 841 aa8.15□□□□□ -1.11
ATG4A-201ENST00000343524 KCNK2O95069 426 aa8.15□□□□□ -1.11
ATG4A-201ENST00000343524 SNX4O95219 450 aa8.15□□□□□ -1.11
ATG4A-201ENST00000343524 PIGNO95427 931 aa8.15□□□□□ -1.11
ATG4A-201ENST00000343524 EGFRP00533 1210 aa8.15□□□□□ -1.11
ATG4A-201ENST00000343524 HLA-DRAP01903 254 aa8.15□□□□□ -1.11
ATG4A-201ENST00000343524 AMHP03971 560 aa8.15□□□□□ -1.11
ATG4A-201ENST00000343524 CAPN1P07384 714 aa8.15□□□□□ -1.11
ATG4A-201ENST00000343524 NAT2P11245 290 aa8.15□□□□□ -1.11
ATG4A-201ENST00000343524 TFEBP19484 476 aa8.15□□□□□ -1.11
ATG4A-201ENST00000343524 TFE3P19532 575 aaPredicted RBP8.15□□□□□ -1.11
ATG4A-201ENST00000343524 ATP6V1B2P21281 511 aa8.15□□□□□ -1.11
ATG4A-201ENST00000343524 OR3A3P47888 321 aa8.15□□□□□ -1.11
ATG4A-201ENST00000343524 KPNA2P52292 529 aaKnown RBP8.15□□□□□ -1.11
ATG4A-201ENST00000343524 CLDN10P78369 228 aa8.15□□□□□ -1.11
ATG4A-201ENST00000343524 OGDHQ02218 1023 aa8.15□□□□□ -1.11
ATG4A-201ENST00000343524 MVKQ03426 396 aa8.15□□□□□ -1.11
ATG4A-201ENST00000343524 CLCQ05315 142 aa8.15□□□□□ -1.11
ATG4A-201ENST00000343524 RALGDSQ12967 914 aa8.15□□□□□ -1.11
ATG4A-201ENST00000343524 SEMA5AQ13591 1074 aa8.15□□□□□ -1.11
ATG4A-201ENST00000343524 STILQ15468 1287 aa8.15□□□□□ -1.11
ATG4A-201ENST00000343524 TAF5Q15542 800 aa8.15□□□□□ -1.11
ATG4A-201ENST00000343524 CRY1Q16526 586 aa8.15□□□□□ -1.11
ATG4A-201ENST00000343524 SHROOM1Q2M3G4 852 aaPredicted RBP8.15□□□□□ -1.11
ATG4A-201ENST00000343524 ZACNQ401N2 412 aa8.15□□□□□ -1.11
ATG4A-201ENST00000343524 SPANXN3Q5MJ09 141 aa8.15□□□□□ -1.11
ATG4A-201ENST00000343524 BRMS1LQ5PSV4 323 aa8.15□□□□□ -1.11
ATG4A-201ENST00000343524 DPP8Q6V1X1 898 aaPredicted RBP8.15□□□□□ -1.11
ATG4A-201ENST00000343524 ZNF767PQ75MW2 155 aa8.15□□□□□ -1.11
ATG4A-201ENST00000343524 CATSPER4Q7RTX7 472 aa8.15□□□□□ -1.11
ATG4A-201ENST00000343524 P2RY8Q86VZ1 359 aa8.15□□□□□ -1.11
ATG4A-201ENST00000343524 PLD3Q8IV08 490 aa8.15□□□□□ -1.11
ATG4A-201ENST00000343524 PHF6Q8IWS0 365 aaKnown RBP eCLIP8.15□□□□□ -1.11
ATG4A-201ENST00000343524 PELI3Q8N2H9 469 aa8.15□□□□□ -1.11
ATG4A-201ENST00000343524 GALNT6Q8NCL4 622 aa8.15□□□□□ -1.11
ATG4A-201ENST00000343524 PAPD5Q8NDF8 572 aaKnown RBP8.15□□□□□ -1.11
ATG4A-201ENST00000343524 ZNF555Q8NEP9 628 aa8.15□□□□□ -1.11
ATG4A-201ENST00000343524 DYNC2LI1Q8TCX1 351 aa8.15□□□□□ -1.11
ATG4A-201ENST00000343524 URGCPQ8TCY9 931 aa8.15□□□□□ -1.11
ATG4A-201ENST00000343524 HDAC10Q969S8 669 aa8.15□□□□□ -1.11
ATG4A-201ENST00000343524 AURKBQ96GD4 344 aaPredicted RBP8.15□□□□□ -1.11
ATG4A-201ENST00000343524 ASB2Q96Q27 587 aa8.15□□□□□ -1.11
ATG4A-201ENST00000343524 RIT2Q99578 217 aa8.15□□□□□ -1.11
ATG4A-201ENST00000343524 IL12RB2Q99665 862 aa8.15□□□□□ -1.11
ATG4A-201ENST00000343524 GATA5Q9BWX5 397 aaPredicted RBP8.15□□□□□ -1.11
ATG4A-201ENST00000343524 MUC3BQ9H195 1237 aa8.15□□□□□ -1.11
ATG4A-201ENST00000343524 ADNPQ9H2P0 1102 aa8.15□□□□□ -1.11
ATG4A-201ENST00000343524 NMRAL1Q9HBL8 299 aa8.15□□□□□ -1.11
ATG4A-201ENST00000343524 EIF2B3Q9NR50 452 aaKnown RBP8.15□□□□□ -1.11
ATG4A-201ENST00000343524 ABCD2Q9UBJ2 740 aa8.15□□□□□ -1.11
ATG4A-201ENST00000343524 STOML2Q9UJZ1 356 aa8.15□□□□□ -1.11
ATG4A-201ENST00000343524 TBX20Q9UMR3 447 aa8.15□□□□□ -1.11
ATG4A-201ENST00000343524 COL4A1P02462 1669 aa8.14□□□□□ -1.11
ATG4A-201ENST00000343524 CCDC78A2IDD5 438 aa8.14□□□□□ -1.11
ATG4A-201ENST00000343524 SOX1O00570 391 aaPredicted RBP8.14□□□□□ -1.11
ATG4A-201ENST00000343524 APOL1O14791 398 aa8.14□□□□□ -1.11
ATG4A-201ENST00000343524 NRP2O60462 931 aa8.14□□□□□ -1.11
ATG4A-201ENST00000343524 FKTNO75072 461 aa8.14□□□□□ -1.11
ATG4A-201ENST00000343524 NPR1P16066 1061 aa8.14□□□□□ -1.11
ATG4A-201ENST00000343524 IL4RP24394 825 aa8.14□□□□□ -1.11
ATG4A-201ENST00000343524 POLR2IP36954 125 aaKnown RBP8.14□□□□□ -1.11
ATG4A-201ENST00000343524 ALDH3A2P51648 485 aa8.14□□□□□ -1.11
ATG4A-201ENST00000343524 CLCNKBP51801 687 aa8.14□□□□□ -1.11
ATG4A-201ENST00000343524 SLC7A2P52569 658 aa8.14□□□□□ -1.11
ATG4A-201ENST00000343524 ZNF135P52742 658 aaPredicted RBP8.14□□□□□ -1.11
ATG4A-201ENST00000343524 LIMK2P53671 638 aa8.14□□□□□ -1.11
ATG4A-201ENST00000343524 SLC13A2Q13183 592 aa8.14□□□□□ -1.11
ATG4A-201ENST00000343524 DMP1Q13316 513 aaPredicted RBP8.14□□□□□ -1.11
ATG4A-201ENST00000343524 IL18R1Q13478 541 aa8.14□□□□□ -1.11
ATG4A-201ENST00000343524 FRG1Q14331 258 aaKnown RBP8.14□□□□□ -1.11
ATG4A-201ENST00000343524 SMTNL2Q2TAL5 461 aa8.14□□□□□ -1.11
ATG4A-201ENST00000343524 SNAP47Q5SQN1 464 aa8.14□□□□□ -1.11
ATG4A-201ENST00000343524 RBM20Q5T481 1227 aaKnown RBP8.14□□□□□ -1.11
ATG4A-201ENST00000343524 DESI1Q6ICB0 168 aa8.14□□□□□ -1.11
ATG4A-201ENST00000343524 KCNT2Q6UVM3 1135 aa8.14□□□□□ -1.11
ATG4A-201ENST00000343524 GK5Q6ZS86 529 aa8.14□□□□□ -1.11
ATG4A-201ENST00000343524 C15orf52Q6ZUT6 534 aaKnown RBP8.14□□□□□ -1.11
ATG4A-201ENST00000343524 PIWIL3Q7Z3Z3 882 aaKnown RBP8.14□□□□□ -1.11
ATG4A-201ENST00000343524 R3HCC1LQ7Z5L2 792 aaKnown RBP8.14□□□□□ -1.11
ATG4A-201ENST00000343524 KIAA1958Q8N8K9 716 aa8.14□□□□□ -1.11
ATG4A-201ENST00000343524 SMG8Q8ND04 991 aaKnown RBP8.14□□□□□ -1.11
ATG4A-201ENST00000343524 MCFD2Q8NI22 146 aa8.14□□□□□ -1.11
ATG4A-201ENST00000343524 SETD6Q8TBK2 473 aa8.14□□□□□ -1.11
ATG4A-201ENST00000343524 MAGEE2Q8TD90 523 aaPredicted RBP8.14□□□□□ -1.11
ATG4A-201ENST00000343524 BLOC1S5Q8TDH9 187 aa8.14□□□□□ -1.11
ATG4A-201ENST00000343524 POMGNT1Q8WZA1 660 aa8.14□□□□□ -1.11
ATG4A-201ENST00000343524 RORBQ92753 470 aa8.14□□□□□ -1.11
ATG4A-201ENST00000343524 ARMC5Q96C12 935 aa8.14□□□□□ -1.11
ATG4A-201ENST00000343524 OMA1Q96E52 524 aa8.14□□□□□ -1.11
ATG4A-201ENST00000343524 NODALQ96S42 347 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms