RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 C2orf78A6NCI8 922 aa10.35□□□□□ -0.75
LIMA1-201ENST00000341247 DRGXA6NNA5 263 aa10.35□□□□□ -0.75
LIMA1-201ENST00000341247 H3BMM5 538 aa10.35□□□□□ -0.75
LIMA1-201ENST00000341247 COCHO43405 550 aa10.35□□□□□ -0.75
LIMA1-201ENST00000341247 FKBP6O75344 327 aa10.35□□□□□ -0.75
LIMA1-201ENST00000341247 SPATA31D3P0C874 917 aa10.35□□□□□ -0.75
LIMA1-201ENST00000341247 GFAPP14136 432 aa10.35□□□□□ -0.75
LIMA1-201ENST00000341247 HOXD9P28356 352 aaPredicted RBP10.35□□□□□ -0.75
LIMA1-201ENST00000341247 CORO1AP31146 461 aaKnown RBP10.35□□□□□ -0.75
LIMA1-201ENST00000341247 PRKAA2P54646 552 aa10.35□□□□□ -0.75
LIMA1-201ENST00000341247 AQP4P55087 323 aa10.35□□□□□ -0.75
LIMA1-201ENST00000341247 MTTPP55157 894 aa10.35□□□□□ -0.75
LIMA1-201ENST00000341247 OXCT1P55809 520 aa10.35□□□□□ -0.75
LIMA1-201ENST00000341247 MS4A2Q01362 244 aa10.35□□□□□ -0.75
LIMA1-201ENST00000341247 PFKPQ01813 784 aa10.35□□□□□ -0.75
LIMA1-201ENST00000341247 RALGDSQ12967 914 aa10.35□□□□□ -0.75
LIMA1-201ENST00000341247 CEACAM7Q14002 265 aa10.35□□□□□ -0.75
LIMA1-201ENST00000341247 SPATA31D4Q6ZUB0 917 aa10.35□□□□□ -0.75
LIMA1-201ENST00000341247 TEX26Q8N6G2 289 aa10.35□□□□□ -0.75
LIMA1-201ENST00000341247 CEP70Q8NHQ1 597 aa10.35□□□□□ -0.75
LIMA1-201ENST00000341247 CAPNS2Q96L46 248 aa10.35□□□□□ -0.75
LIMA1-201ENST00000341247 SLC39A3Q9BRY0 314 aa10.35□□□□□ -0.75
LIMA1-201ENST00000341247 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.35□□□□□ -0.75
LIMA1-201ENST00000341247 ZBTB26Q9HCK0 441 aa10.35□□□□□ -0.75
LIMA1-201ENST00000341247 CATSPERZQ9NTU4 200 aa10.35□□□□□ -0.75
LIMA1-201ENST00000341247 LOC101059915A0A1B0GWI6 518 aaPredicted RBP10.35□□□□□ -0.75
LIMA1-201ENST00000341247 RHOBTB1O94844 696 aa10.35□□□□□ -0.75
LIMA1-201ENST00000341247 RBP1P09455 135 aa10.35□□□□□ -0.75
LIMA1-201ENST00000341247 ALDH7A1P49419 539 aaKnown RBP10.35□□□□□ -0.75
LIMA1-201ENST00000341247 OR4D1Q15615 310 aa10.35□□□□□ -0.75
LIMA1-201ENST00000341247 PITRM1Q5JRX3 1037 aa10.35□□□□□ -0.75
LIMA1-201ENST00000341247 GLT6D1Q7Z4J2 308 aa10.35□□□□□ -0.75
LIMA1-201ENST00000341247 OR4L1Q8NH43 312 aa10.35□□□□□ -0.75
LIMA1-201ENST00000341247 RP9Q8TA86 221 aaKnown RBP10.35□□□□□ -0.75
LIMA1-201ENST00000341247 PRICKLE1Q96MT3 831 aaPredicted RBP10.35□□□□□ -0.75
LIMA1-201ENST00000341247 RNF38Q9H0F5 515 aa10.35□□□□□ -0.75
LIMA1-201ENST00000341247 SLC24A3Q9HC58 644 aa10.35□□□□□ -0.75
LIMA1-201ENST00000341247 CREBZFQ9NS37 354 aa10.35□□□□□ -0.75
LIMA1-201ENST00000341247 GEMIN8Q9NWZ8 242 aaKnown RBP10.35□□□□□ -0.75
LIMA1-201ENST00000341247 DONSONQ9NYP3 566 aa10.35□□□□□ -0.75
LIMA1-201ENST00000341247 GALPQ9UBC7 116 aa10.35□□□□□ -0.75
LIMA1-201ENST00000341247 UBA2Q9UBT2 640 aaPredicted RBP10.35□□□□□ -0.75
LIMA1-201ENST00000341247 BTRCQ9Y297 605 aa10.35□□□□□ -0.75
LIMA1-201ENST00000341247 UBDO15205 165 aa10.35□□□□□ -0.75
LIMA1-201ENST00000341247 NPHS1O60500 1241 aa10.35□□□□□ -0.75
LIMA1-201ENST00000341247 SEC24AO95486 1093 aa10.35□□□□□ -0.75
LIMA1-201ENST00000341247 RHOCP08134 193 aa10.35□□□□□ -0.75
LIMA1-201ENST00000341247 FOXA1P55317 472 aa10.35□□□□□ -0.75
LIMA1-201ENST00000341247 ECT2LQ008S8 904 aa10.35□□□□□ -0.75
LIMA1-201ENST00000341247 RNF220Q5VTB9 566 aa10.35□□□□□ -0.75
LIMA1-201ENST00000341247 SCIMPQ6UWF3 145 aa10.35□□□□□ -0.75
LIMA1-201ENST00000341247 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.35□□□□□ -0.75
LIMA1-201ENST00000341247 CCDC117Q8IWD4 279 aaPredicted RBP10.35□□□□□ -0.75
LIMA1-201ENST00000341247 DDIASQ8IXT1 998 aa10.35□□□□□ -0.75
LIMA1-201ENST00000341247 BHLHE22Q8NFJ8 381 aaPredicted RBP10.35□□□□□ -0.75
LIMA1-201ENST00000341247 GABPB2Q8TAK5 448 aaPredicted RBP10.35□□□□□ -0.75
LIMA1-201ENST00000341247 TRPC4APQ8TEL6 797 aa10.35□□□□□ -0.75
LIMA1-201ENST00000341247 SEPT8Q92599 483 aa10.35□□□□□ -0.75
LIMA1-201ENST00000341247 CDKN2AIPNLQ96HQ2 116 aa10.35□□□□□ -0.75
LIMA1-201ENST00000341247 CNDP1Q96KN2 507 aa10.35□□□□□ -0.75
LIMA1-201ENST00000341247 UBXN10Q96LJ8 280 aa10.35□□□□□ -0.75
LIMA1-201ENST00000341247 C3orf30Q96M34 536 aa10.35□□□□□ -0.75
LIMA1-201ENST00000341247 UTP6Q9NYH9 597 aaKnown RBP10.35□□□□□ -0.75
LIMA1-201ENST00000341247 IL37Q9NZH6 218 aa10.35□□□□□ -0.75
LIMA1-201ENST00000341247 GMPR2Q9P2T1 348 aaKnown RBP10.35□□□□□ -0.75
LIMA1-201ENST00000341247 SUFUQ9UMX1 484 aa10.35□□□□□ -0.75
LIMA1-201ENST00000341247 TRAF6Q9Y4K3 522 aa10.35□□□□□ -0.75
LIMA1-201ENST00000341247 FAM92AA1XBS5 289 aa10.34□□□□□ -0.75
LIMA1-201ENST00000341247 TRPC5OSA6NMA1 111 aa10.34□□□□□ -0.75
LIMA1-201ENST00000341247 OR1I1O60431 355 aa10.34□□□□□ -0.75
LIMA1-201ENST00000341247 SP100P23497 879 aaPredicted RBP10.34□□□□□ -0.75
LIMA1-201ENST00000341247 HOXD10P28358 340 aa10.34□□□□□ -0.75
LIMA1-201ENST00000341247 ARL1P40616 181 aaPredicted RBP10.34□□□□□ -0.75
LIMA1-201ENST00000341247 SLC11A2P49281 568 aa10.34□□□□□ -0.75
LIMA1-201ENST00000341247 NOGQ13253 232 aa10.34□□□□□ -0.75
LIMA1-201ENST00000341247 ACAP2Q15057 778 aa10.34□□□□□ -0.75
LIMA1-201ENST00000341247 MRNIPQ6NTE8 343 aa10.34□□□□□ -0.75
LIMA1-201ENST00000341247 PAOXQ6QHF9 649 aa10.34□□□□□ -0.75
LIMA1-201ENST00000341247 PAQR3Q6TCH7 311 aa10.34□□□□□ -0.75
LIMA1-201ENST00000341247 C16orf89Q6UX73 402 aa10.34□□□□□ -0.75
LIMA1-201ENST00000341247 ANKS3Q6ZW76 656 aa10.34□□□□□ -0.75
LIMA1-201ENST00000341247 SPATA24Q86W54 205 aa10.34□□□□□ -0.75
LIMA1-201ENST00000341247 ANKRD27Q96NW4 1050 aa10.34□□□□□ -0.75
LIMA1-201ENST00000341247 PCDHAC1Q9H158 963 aa10.34□□□□□ -0.75
LIMA1-201ENST00000341247 COPS7BQ9H9Q2 264 aaPredicted RBP10.34□□□□□ -0.75
LIMA1-201ENST00000341247 EFCAB1Q9HAE3 211 aa10.34□□□□□ -0.75
LIMA1-201ENST00000341247 MID1IP1Q9NPA3 183 aa10.34□□□□□ -0.75
LIMA1-201ENST00000341247 PLXNA3P51805 1871 aa10.34□□□□□ -0.75
LIMA1-201ENST00000341247 A0A1B0GTL3 188 aa10.34□□□□□ -0.75
LIMA1-201ENST00000341247 TCAF2A6NFQ2 919 aa10.34□□□□□ -0.75
LIMA1-201ENST00000341247 A8MX80 341 aa10.34□□□□□ -0.75
LIMA1-201ENST00000341247 SUPT3HB4E1H0 165 aa10.34□□□□□ -0.75
LIMA1-201ENST00000341247 SLCO1B7G3V0H7 640 aa10.34□□□□□ -0.75
LIMA1-201ENST00000341247 SUPT3HO75486 399 aa10.34□□□□□ -0.75
LIMA1-201ENST00000341247 RPP40O75818 363 aaKnown RBP10.34□□□□□ -0.75
LIMA1-201ENST00000341247 SRP72O76094 671 aaKnown RBP10.34□□□□□ -0.75
LIMA1-201ENST00000341247 IGLV3-27P01718 113 aa10.34□□□□□ -0.75
LIMA1-201ENST00000341247 LINGO3P0C6S8 592 aa10.34□□□□□ -0.75
LIMA1-201ENST00000341247 GCKP35557 465 aa10.34□□□□□ -0.75
LIMA1-201ENST00000341247 TWF1Q12792 350 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms