RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 GLT1D1Q96MS3 346 aa8.71□□□□□ -1.02
RTN3-202ENST00000339997 PPP1R2P1Q96PQ5 205 aa8.71□□□□□ -1.02
RTN3-202ENST00000339997 PRKD2Q9BZL6 878 aa8.71□□□□□ -1.02
RTN3-202ENST00000339997 FAM198AQ9UFP1 575 aa8.71□□□□□ -1.02
RTN3-202ENST00000339997 LNPEPQ9UIQ6 1025 aa8.71□□□□□ -1.02
RTN3-202ENST00000339997 RAB23Q9ULC3 237 aa8.71□□□□□ -1.02
RTN3-202ENST00000339997 ANGPT4Q9Y264 503 aa8.71□□□□□ -1.02
RTN3-202ENST00000339997 VWA7Q9Y334 891 aa8.71□□□□□ -1.02
RTN3-202ENST00000339997 STON1Q9Y6Q2 735 aa8.71□□□□□ -1.02
RTN3-202ENST00000339997 SRRM3A6NNA2 597 aaPredicted RBP8.7□□□□□ -1.02
RTN3-202ENST00000339997 G3V2T6 193 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 SNAP91O60641 907 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 TPST2O60704 377 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 CBFA2T3O75081 653 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 IFNA14P01570 189 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 PAEPP09466 180 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 HSD3B2P26439 372 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 MTHFRP42898 656 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 LHX1P48742 406 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 PGGT1BP53609 377 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 WNT3AP56704 352 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 TGFB2P61812 414 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 COPZ1P61923 177 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 NADK2Q4G0N4 442 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 ZNF484Q5JVG2 852 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 PGBD2Q6P3X8 592 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 AKAP14Q86UN6 197 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 SAMD3Q8N6K7 520 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 OR2T12Q8NG77 320 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 BORCS5Q969J3 196 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 MTIF3Q9H2K0 278 aaKnown RBP8.7□□□□□ -1.02
RTN3-202ENST00000339997 MARCH2Q9P0N8 246 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 PCDHB9Q9Y5E1 797 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 STRCP1A6NGW2 1772 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 SPATA31A1Q5TZJ5 1347 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 FBXO21O94952 628 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 PGLSO95336 258 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 CSH1P0DML2 217 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 CSH2P0DML3 217 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 CDC42EP1Q00587 391 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 STXBP5Q5T5C0 1151 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 PRR23BQ6ZRT6 265 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 VANGL1Q8TAA9 524 aaPredicted RBP8.7□□□□□ -1.02
RTN3-202ENST00000339997 APOLD1Q96LR9 279 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 BBS4Q96RK4 519 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 KIFC1Q9BW19 673 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 ASB7Q9H672 318 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 TNKS1BP1Q9C0C2 1729 aaKnown RBP8.7□□□□□ -1.02
RTN3-202ENST00000339997 SMIM30A4D0T7 59 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 TMEM233B4DJY2 109 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 NT5C1B-RDH14C9J2C7 533 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 RFXANKO14593 260 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 GPR182O15218 404 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 ITM2AO43736 263 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 GAS2O43903 313 aaKnown RBP8.7□□□□□ -1.02
RTN3-202ENST00000339997 SERPINA1P01009 418 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 ITPKAP23677 461 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 CTSKP43235 329 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 SPIBQ01892 262 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 FAM187BQ17R55 369 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 SULT1C3Q6IMI6 304 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 DEF8Q6ZN54 512 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 VSIG10LQ86VR7 867 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 PHF13Q86YI8 300 aaPredicted RBP8.7□□□□□ -1.02
RTN3-202ENST00000339997 ANKRD13AQ8IZ07 590 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 GALNT15Q8N3T1 639 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 KLHL23Q8NBE8 558 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 TFAP2BQ92481 460 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 MYOCQ99972 504 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 TECPR2O15040 1411 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 C1orf167Q5SNV9 1468 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 RBAK-RBAKDNI3L0D1 243 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 hCG_2039718K7EN88 272 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 LIN7AO14910 233 aaPredicted RBP8.7□□□□□ -1.02
RTN3-202ENST00000339997 NDUFB5O43674 189 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 MFSD11O43934 449 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 PDE9AO76083 593 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 LRG1P02750 347 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 YWHAQP27348 245 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 CDKN2BP42772 138 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 DCAF12L1Q5VU92 463 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 AAGABQ6PD74 315 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 RHBDF2Q6PJF5 856 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 FAM131AQ6UXB0 335 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 EIF3MQ7L2H7 374 aaKnown RBP8.7□□□□□ -1.02
RTN3-202ENST00000339997 NT5DC4Q86YG4 428 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 CLYBLQ8N0X4 340 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 MPP5Q8N3R9 675 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 PIK3C3Q8NEB9 887 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 SIPA1Q96FS4 1042 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 MRPL57Q9BQC6 102 aaKnown RBP8.7□□□□□ -1.02
RTN3-202ENST00000339997 POLR1EQ9GZS1 481 aaKnown RBP8.7□□□□□ -1.02
RTN3-202ENST00000339997 MIR1-1HGQ9H1L0 117 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 VAV3Q9UKW4 847 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 ERGIC3Q9Y282 383 aa8.7□□□□□ -1.02
RTN3-202ENST00000339997 CPSF4LA6NMK7 179 aaKnown RBP8.69□□□□□ -1.02
RTN3-202ENST00000339997 HAT1O14929 419 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 ZBTB14O43829 449 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 SLC22A3O75751 556 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 PABPC1P11940 636 aaKnown RBP8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms