RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 R3HDMLQ9H3Y0 253 aa6.87□□□□□ -1.31
SF3B1-201ENST00000335508 ELOVL2Q9NXB9 296 aa6.87□□□□□ -1.31
SF3B1-201ENST00000335508 CRYL1Q9Y2S2 319 aa6.87□□□□□ -1.31
SF3B1-201ENST00000335508 ABCA3Q99758 1704 aa6.87□□□□□ -1.31
SF3B1-201ENST00000335508 MARF1Q9Y4F3 1742 aaKnown RBP6.87□□□□□ -1.31
SF3B1-201ENST00000335508 AVILO75366 819 aa6.87□□□□□ -1.31
SF3B1-201ENST00000335508 RHOP08100 348 aa6.87□□□□□ -1.31
SF3B1-201ENST00000335508 KITP10721 976 aa6.87□□□□□ -1.31
SF3B1-201ENST00000335508 NEK3P51956 506 aa6.87□□□□□ -1.31
SF3B1-201ENST00000335508 CAMK1DQ8IU85 385 aa6.87□□□□□ -1.31
SF3B1-201ENST00000335508 GSTCDQ8NEC7 633 aa6.87□□□□□ -1.31
SF3B1-201ENST00000335508 BADQ92934 168 aa6.87□□□□□ -1.31
SF3B1-201ENST00000335508 CLDND1Q9NY35 253 aa6.87□□□□□ -1.31
SF3B1-201ENST00000335508 IRAK3Q9Y616 596 aa6.87□□□□□ -1.31
SF3B1-201ENST00000335508 C5orf58C9J3I9 102 aa6.87□□□□□ -1.31
SF3B1-201ENST00000335508 H3BM21 787 aa6.87□□□□□ -1.31
SF3B1-201ENST00000335508 PRPF4O43172 522 aaKnown RBP eCLIP6.87□□□□□ -1.312e-7■□□□□ 11.1
SF3B1-201ENST00000335508 PRAMEF1O95521 474 aa6.87□□□□□ -1.31
SF3B1-201ENST00000335508 SYN1P17600 705 aa6.87□□□□□ -1.31
SF3B1-201ENST00000335508 GRSF1Q12849 480 aaKnown RBP eCLIP6.87□□□□□ -1.31
SF3B1-201ENST00000335508 CTBP1Q13363 440 aa6.87□□□□□ -1.31
SF3B1-201ENST00000335508 FRG1Q14331 258 aaKnown RBP6.87□□□□□ -1.31
SF3B1-201ENST00000335508 PKDCCQ504Y2 493 aa6.87□□□□□ -1.31
SF3B1-201ENST00000335508 LRRTM3Q86VH5 581 aa6.87□□□□□ -1.31
SF3B1-201ENST00000335508 ELMO1Q92556 727 aa6.87□□□□□ -1.31
SF3B1-201ENST00000335508 NDRG1Q92597 394 aaKnown RBP6.87□□□□□ -1.31
SF3B1-201ENST00000335508 CYP4F12Q9HCS2 524 aa6.87□□□□□ -1.31
SF3B1-201ENST00000335508 DNAAF2Q9NVR5 837 aaKnown RBP6.87□□□□□ -1.31
SF3B1-201ENST00000335508 MRPS33Q9Y291 106 aaKnown RBP6.87□□□□□ -1.31
SF3B1-201ENST00000335508 MYH1P12882 1939 aa6.87□□□□□ -1.31
SF3B1-201ENST00000335508 PAPPAQ13219 1627 aa6.87□□□□□ -1.31
SF3B1-201ENST00000335508 FCHO1O14526 889 aa6.87□□□□□ -1.31
SF3B1-201ENST00000335508 MGEA5O60502 916 aa6.87□□□□□ -1.31
SF3B1-201ENST00000335508 LILRB3O75022 631 aa6.87□□□□□ -1.31
SF3B1-201ENST00000335508 STC2O76061 302 aa6.87□□□□□ -1.31
SF3B1-201ENST00000335508 TGDSO95455 350 aa6.87□□□□□ -1.31
SF3B1-201ENST00000335508 MT-CYBP00156 380 aaPredicted RBP6.87□□□□□ -1.31
SF3B1-201ENST00000335508 CFHP08603 1231 aa6.87□□□□□ -1.31
SF3B1-201ENST00000335508 HOXC13P31276 330 aa6.87□□□□□ -1.31
SF3B1-201ENST00000335508 MC4RP32245 332 aa6.87□□□□□ -1.31
SF3B1-201ENST00000335508 GRIA4P48058 902 aa6.87□□□□□ -1.31
SF3B1-201ENST00000335508 TP53BP2Q13625 1128 aa6.87□□□□□ -1.31
SF3B1-201ENST00000335508 TAF1AQ15573 450 aaPredicted RBP6.87□□□□□ -1.31
SF3B1-201ENST00000335508 ALKAL1Q6UXT8 129 aa6.87□□□□□ -1.31
SF3B1-201ENST00000335508 PRPF39Q86UA1 669 aaKnown RBP6.87□□□□□ -1.31
SF3B1-201ENST00000335508 ZNF655Q8N720 491 aaPredicted RBP6.87□□□□□ -1.31
SF3B1-201ENST00000335508 KYQ8NBH2 561 aa6.87□□□□□ -1.31
SF3B1-201ENST00000335508 LRRN4CLQ8ND94 238 aa6.87□□□□□ -1.31
SF3B1-201ENST00000335508 KCNJ9Q92806 393 aa6.87□□□□□ -1.31
SF3B1-201ENST00000335508 C7orf26Q96N11 449 aa6.87□□□□□ -1.31
SF3B1-201ENST00000335508 TACO1Q9BSH4 297 aaKnown RBP6.87□□□□□ -1.31
SF3B1-201ENST00000335508 SPATS2LQ9NUQ6 558 aaKnown RBP6.87□□□□□ -1.31
SF3B1-201ENST00000335508 ANKRD36CQ5JPF3 1778 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 BUD23O43709 281 aaKnown RBP6.86□□□□□ -1.31
SF3B1-201ENST00000335508 CTSEP14091 401 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 PRKCHP24723 683 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 HMGCLP35914 325 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 CCNG1P51959 295 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 CAPRIN1Q14444 709 aaKnown RBP6.86□□□□□ -1.31
SF3B1-201ENST00000335508 ZDHHC24Q6UX98 284 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 SPATA22Q8NHS9 363 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 MMADHCQ9H3L0 296 aaPredicted RBP6.86□□□□□ -1.31
SF3B1-201ENST00000335508 ATAD3AQ9NVI7 634 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 THEGQ9P2T0 379 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 CCL16O15467 120 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 IFNEQ86WN2 208 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 ZSCAN18Q8TBC5 510 aaPredicted RBP6.86□□□□□ -1.31
SF3B1-201ENST00000335508 CXorf40BQ96DE9 158 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 HMCESQ96FZ2 354 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 TUBGCP5Q96RT8 1024 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 SPOCK3Q9BQ16 436 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 ECSITQ9BQ95 431 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 KIFC1Q9BW19 673 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 ARNT2Q9HBZ2 717 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 SYBUQ9NX95 663 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 RGSL1A5PLK6 1076 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 PI15O43692 258 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 SGTAO43765 313 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 BPGMP07738 259 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 ATXN8OSP0DMR3 200 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 C22orf39Q6P5X5 142 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 TMEM135Q86UB9 458 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 CPXM2Q8N436 756 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 TMCO5AQ8N6Q1 288 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 SLC43A3Q8NBI5 491 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 PIP4K2CQ8TBX8 421 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 TLCD1Q96CP7 247 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 PHF21BQ96EK2 531 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 MYRFLQ96LU7 910 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 PAAF1Q9BRP4 392 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 OSBPL6Q9BZF3 934 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 DPY30Q9C005 99 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 MID1IP1Q9NPA3 183 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 ABCB8Q9NUT2 735 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 NENFQ9UMX5 172 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 SNX6Q9UNH7 406 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 ASF1AQ9Y294 204 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 PLLPQ9Y342 182 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 TBC1D3DA0A087WVF3 549 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 TBC1D3IA0A087WXS9 549 aa6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms