RNA–Protein interactions for RNA: ENST00000314759.5

SKA3-202, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SKA3, Length 2,919 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-202ENST00000314759 SLC36A3Q495N2 470 aa13.47□□□□□ -0.25
SKA3-202ENST00000314759 NOMO2Q5JPE7 1267 aa13.47□□□□□ -0.25
SKA3-202ENST00000314759 RAB41Q5JT25 222 aa13.47□□□□□ -0.25
SKA3-202ENST00000314759 CHST15Q7LFX5 561 aaPredicted RBP13.47□□□□□ -0.25
SKA3-202ENST00000314759 CCDC117Q8IWD4 279 aaPredicted RBP13.47□□□□□ -0.25
SKA3-202ENST00000314759 SLC15A3Q8IY34 581 aa13.47□□□□□ -0.25
SKA3-202ENST00000314759 PCYOX1LQ8NBM8 494 aa13.47□□□□□ -0.25
SKA3-202ENST00000314759 UBXN10Q96LJ8 280 aa13.47□□□□□ -0.25
SKA3-202ENST00000314759 IL12RB2Q99665 862 aa13.47□□□□□ -0.25
SKA3-202ENST00000314759 AKTIPQ9H8T0 292 aa13.47□□□□□ -0.25
SKA3-202ENST00000314759 TRNAU1APQ9NX07 287 aaKnown RBP13.47□□□□□ -0.25
SKA3-202ENST00000314759 NEU3Q9UQ49 428 aa13.47□□□□□ -0.25
SKA3-202ENST00000314759 A0A0J9YYE9 177 aa13.47□□□□□ -0.25
SKA3-202ENST00000314759 MYBPHLA2RUH7 354 aa13.47□□□□□ -0.25
SKA3-202ENST00000314759 TMEM247A6NEH6 219 aa13.47□□□□□ -0.25
SKA3-202ENST00000314759 MAFKO60675 156 aa13.47□□□□□ -0.25
SKA3-202ENST00000314759 SUPT7LO94864 414 aa13.47□□□□□ -0.25
SKA3-202ENST00000314759 RBP1P09455 135 aa13.47□□□□□ -0.25
SKA3-202ENST00000314759 IDO1P14902 403 aa13.47□□□□□ -0.25
SKA3-202ENST00000314759 IMPDH1P20839 514 aa13.47□□□□□ -0.25
SKA3-202ENST00000314759 HOXD12P35452 270 aa13.47□□□□□ -0.25
SKA3-202ENST00000314759 ATP4BP51164 291 aa13.47□□□□□ -0.25
SKA3-202ENST00000314759 BMXP51813 675 aa13.47□□□□□ -0.25
SKA3-202ENST00000314759 RAB39AQ14964 217 aa13.47□□□□□ -0.25
SKA3-202ENST00000314759 ACAP2Q15057 778 aa13.47□□□□□ -0.25
SKA3-202ENST00000314759 UGT3A2Q3SY77 523 aa13.47□□□□□ -0.25
SKA3-202ENST00000314759 VPS26BQ4G0F5 336 aa13.47□□□□□ -0.25
SKA3-202ENST00000314759 RANBP10Q6VN20 620 aa13.47□□□□□ -0.25
SKA3-202ENST00000314759 FAM35AQ86V20 835 aa13.47□□□□□ -0.25
SKA3-202ENST00000314759 ATPAF2Q8N5M1 289 aa13.47□□□□□ -0.25
SKA3-202ENST00000314759 DDHD1Q8NEL9 900 aa13.47□□□□□ -0.25
SKA3-202ENST00000314759 TNIP2Q8NFZ5 429 aa13.47□□□□□ -0.25
SKA3-202ENST00000314759 C19orf60Q96EN9 201 aa13.47□□□□□ -0.25
SKA3-202ENST00000314759 PCED1BQ96HM7 432 aa13.47□□□□□ -0.25
SKA3-202ENST00000314759 FSD1LQ9BXM9 530 aa13.47□□□□□ -0.25
SKA3-202ENST00000314759 SIK2Q9H0K1 926 aa13.47□□□□□ -0.25
SKA3-202ENST00000314759 ENTPD7Q9NQZ7 604 aa13.47□□□□□ -0.25
SKA3-202ENST00000314759 ABCD2Q9UBJ2 740 aa13.47□□□□□ -0.25
SKA3-202ENST00000314759 PDCD11Q14690 1871 aaKnown RBP13.47□□□□□ -0.25
SKA3-202ENST00000314759 RNF103-CHMP3A0A140T963 221 aa13.46□□□□□ -0.25
SKA3-202ENST00000314759 AQP12BA6NM10 295 aa13.46□□□□□ -0.25
SKA3-202ENST00000314759 NR5A2O00482 541 aa13.46□□□□□ -0.25
SKA3-202ENST00000314759 OXTRP30559 389 aa13.46□□□□□ -0.25
SKA3-202ENST00000314759 ZNF135P52742 658 aaPredicted RBP13.46□□□□□ -0.25
SKA3-202ENST00000314759 STX1BP61266 288 aa13.46□□□□□ -0.25
SKA3-202ENST00000314759 ATP6V0D1P61421 351 aa13.46□□□□□ -0.25
SKA3-202ENST00000314759 UBXN11Q5T124 520 aa13.46□□□□□ -0.25
SKA3-202ENST00000314759 C16orf87Q6PH81 154 aa13.46□□□□□ -0.25
SKA3-202ENST00000314759 TMEM207Q6UWW9 146 aa13.46□□□□□ -0.25
SKA3-202ENST00000314759 TAC4Q86UU9 113 aa13.46□□□□□ -0.25
SKA3-202ENST00000314759 SLC22A9Q8IVM8 553 aa13.46□□□□□ -0.25
SKA3-202ENST00000314759 AQP12AQ8IXF9 295 aa13.46□□□□□ -0.25
SKA3-202ENST00000314759 CMTR2Q8IYT2 770 aaKnown RBP13.46□□□□□ -0.25
SKA3-202ENST00000314759 RNF34Q969K3 372 aa13.46□□□□□ -0.25
SKA3-202ENST00000314759 FBXL20Q96IG2 436 aa13.46□□□□□ -0.25
SKA3-202ENST00000314759 MRGPRX2Q96LB1 330 aa13.46□□□□□ -0.25
SKA3-202ENST00000314759 CORO1BQ9BR76 489 aa13.46□□□□□ -0.25
SKA3-202ENST00000314759 GIMAP2Q9UG22 337 aa13.46□□□□□ -0.25
SKA3-202ENST00000314759 OAZ3Q9UMX2 235 aa13.46□□□□□ -0.25
SKA3-202ENST00000314759 PTGDR2Q9Y5Y4 395 aa13.46□□□□□ -0.25
SKA3-202ENST00000314759 C9JVG2 144 aa13.46□□□□□ -0.25
SKA3-202ENST00000314759 HLA-DQB2P05538 268 aa13.46□□□□□ -0.25
SKA3-202ENST00000314759 GEMP55040 296 aa13.46□□□□□ -0.25
SKA3-202ENST00000314759 CDH13P55290 713 aa13.46□□□□□ -0.25
SKA3-202ENST00000314759 CAPRIN1Q14444 709 aaKnown RBP13.46□□□□□ -0.25
SKA3-202ENST00000314759 KIF19Q2TAC6 998 aa13.46□□□□□ -0.25
SKA3-202ENST00000314759 ZNF678Q5SXM1 525 aa13.46□□□□□ -0.25
SKA3-202ENST00000314759 KIAA0408Q6ZU52 694 aa13.46□□□□□ -0.25
SKA3-202ENST00000314759 SH3RF2Q8TEC5 729 aa13.46□□□□□ -0.25
SKA3-202ENST00000314759 ALG9Q9H6U8 611 aa13.46□□□□□ -0.25
SKA3-202ENST00000314759 VTA1Q9NP79 307 aa13.46□□□□□ -0.25
SKA3-202ENST00000314759 TIMM13Q9Y5L4 95 aaPredicted RBP13.46□□□□□ -0.25
SKA3-202ENST00000314759 HHLA1C9JL84 531 aa13.46□□□□□ -0.26
SKA3-202ENST00000314759 PPP6CO00743 305 aa13.46□□□□□ -0.26
SKA3-202ENST00000314759 MATN3O15232 486 aa13.46□□□□□ -0.26
SKA3-202ENST00000314759 ACOX3O15254 700 aa13.46□□□□□ -0.26
SKA3-202ENST00000314759 MMP3P08254 477 aa13.46□□□□□ -0.26
SKA3-202ENST00000314759 ZNF182P17025 639 aaPredicted RBP13.46□□□□□ -0.26
SKA3-202ENST00000314759 CAPN3P20807 821 aa13.46□□□□□ -0.26
SKA3-202ENST00000314759 FASP25445 335 aa13.46□□□□□ -0.26
SKA3-202ENST00000314759 YAP1P46937 504 aaKnown RBP13.46□□□□□ -0.26
SKA3-202ENST00000314759 LEPRP48357 1165 aaKnown RBP13.46□□□□□ -0.26
SKA3-202ENST00000314759 CCT8P50990 548 aa13.46□□□□□ -0.26
SKA3-202ENST00000314759 TNK2Q07912 1038 aa13.46□□□□□ -0.26
SKA3-202ENST00000314759 SLC14A2Q15849 920 aa13.46□□□□□ -0.26
SKA3-202ENST00000314759 IL31Q6EBC2 164 aa13.46□□□□□ -0.26
SKA3-202ENST00000314759 ANKRD26P1Q6NSI1 321 aa13.46□□□□□ -0.26
SKA3-202ENST00000314759 OFCC1Q8IZS5 231 aa13.46□□□□□ -0.26
SKA3-202ENST00000314759 SLC45A3Q96JT2 553 aa13.46□□□□□ -0.26
SKA3-202ENST00000314759 HOPXQ9BPY8 73 aaPredicted RBP13.46□□□□□ -0.26
SKA3-202ENST00000314759 TRMOQ9BU70 441 aa13.46□□□□□ -0.26
SKA3-202ENST00000314759 TRIM8Q9BZR9 551 aa13.46□□□□□ -0.26
SKA3-202ENST00000314759 POLR1BQ9H9Y6 1135 aa13.46□□□□□ -0.26
SKA3-202ENST00000314759 NDFIP2Q9NV92 336 aa13.46□□□□□ -0.26
SKA3-202ENST00000314759 CMTM6Q9NX76 183 aa13.46□□□□□ -0.26
SKA3-202ENST00000314759 DNAJC15Q9Y5T4 150 aa13.46□□□□□ -0.26
SKA3-202ENST00000314759 RBM47A0AV96 593 aaKnown RBP13.45□□□□□ -0.26
SKA3-202ENST00000314759 BBIP1A8MTZ0 92 aa13.45□□□□□ -0.26
SKA3-202ENST00000314759 FXYD1O00168 92 aa13.45□□□□□ -0.26
SKA3-202ENST00000314759 CXCL11O14625 94 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms