RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 PPP6CO00743 305 aa20.08■□□□□ 0.8
VPS53-201ENST00000291074 SIX3O95343 332 aaPredicted RBP20.08■□□□□ 0.8
VPS53-201ENST00000291074 KLKB1P03952 638 aa20.08■□□□□ 0.8
VPS53-201ENST00000291074 IMPDH1P20839 514 aa20.08■□□□□ 0.8
VPS53-201ENST00000291074 OR4D1Q15615 310 aa20.08■□□□□ 0.8
VPS53-201ENST00000291074 UNC50Q53HI1 259 aa20.08■□□□□ 0.8
VPS53-201ENST00000291074 MRNIPQ6NTE8 343 aa20.08■□□□□ 0.8
VPS53-201ENST00000291074 CYHR1Q6ZMK1 362 aa20.08■□□□□ 0.8
VPS53-201ENST00000291074 SLC22A9Q8IVM8 553 aa20.08■□□□□ 0.8
VPS53-201ENST00000291074 GATA6Q92908 595 aa20.08■□□□□ 0.8
VPS53-201ENST00000291074 SERPINI1Q99574 410 aa20.08■□□□□ 0.8
VPS53-201ENST00000291074 DDX50Q9BQ39 737 aaKnown RBP20.08■□□□□ 0.8
VPS53-201ENST00000291074 TRPC7Q9HCX4 862 aa20.08■□□□□ 0.8
VPS53-201ENST00000291074 TRAF6Q9Y4K3 522 aa20.08■□□□□ 0.8
VPS53-201ENST00000291074 LOC101059915A0A1B0GWI6 518 aaPredicted RBP20.07■□□□□ 0.8
VPS53-201ENST00000291074 UBA6A0AVT1 1052 aaPredicted RBP20.07■□□□□ 0.8
VPS53-201ENST00000291074 MAP3K13O43283 966 aa20.07■□□□□ 0.8
VPS53-201ENST00000291074 NDST3O95803 873 aa20.07■□□□□ 0.8
VPS53-201ENST00000291074 OR1D2P34982 312 aa20.07■□□□□ 0.8
VPS53-201ENST00000291074 AQP4P55087 323 aa20.07■□□□□ 0.8
VPS53-201ENST00000291074 MRPS22P82650 360 aaKnown RBP20.07■□□□□ 0.8
VPS53-201ENST00000291074 SATB1Q01826 763 aa20.07■□□□□ 0.8
VPS53-201ENST00000291074 FLOT2Q14254 428 aa20.07■□□□□ 0.8
VPS53-201ENST00000291074 CHSY3Q70JA7 882 aa20.07■□□□□ 0.8
VPS53-201ENST00000291074 PDSS2Q86YH6 399 aa20.07■□□□□ 0.8
VPS53-201ENST00000291074 SCLYQ96I15 445 aa20.07■□□□□ 0.8
VPS53-201ENST00000291074 CINPQ9BW66 212 aaPredicted RBP20.07■□□□□ 0.8
VPS53-201ENST00000291074 TTLL2Q9BWV7 592 aa20.07■□□□□ 0.8
VPS53-201ENST00000291074 UBA2Q9UBT2 640 aaPredicted RBP20.07■□□□□ 0.8
VPS53-201ENST00000291074 UBXN8O00124 270 aa20.07■□□□□ 0.8
VPS53-201ENST00000291074 SCAMP3O14828 347 aaKnown RBP20.07■□□□□ 0.8
VPS53-201ENST00000291074 COCHO43405 550 aa20.07■□□□□ 0.8
VPS53-201ENST00000291074 TSPAN3O60637 253 aa20.07■□□□□ 0.8
VPS53-201ENST00000291074 EPOP01588 193 aa20.07■□□□□ 0.8
VPS53-201ENST00000291074 IRF1P10914 325 aa20.07■□□□□ 0.8
VPS53-201ENST00000291074 ZNF37AP17032 561 aaPredicted RBP20.07■□□□□ 0.8
VPS53-201ENST00000291074 TCN1P20061 433 aaPredicted RBP20.07■□□□□ 0.8
VPS53-201ENST00000291074 KPNA1P52294 538 aaPredicted RBP20.07■□□□□ 0.8
VPS53-201ENST00000291074 NOGQ13253 232 aa20.07■□□□□ 0.8
VPS53-201ENST00000291074 PCDH20Q8N6Y1 951 aaKnown RBP20.07■□□□□ 0.8
VPS53-201ENST00000291074 PTGR2Q8N8N7 351 aaPredicted RBP20.07■□□□□ 0.8
VPS53-201ENST00000291074 WBP2Q969T9 261 aa20.07■□□□□ 0.8
VPS53-201ENST00000291074 RMDN1Q96DB5 314 aa20.07■□□□□ 0.8
VPS53-201ENST00000291074 CDKN2AIPNLQ96HQ2 116 aa20.07■□□□□ 0.8
VPS53-201ENST00000291074 MAGEH1Q9H213 219 aa20.07■□□□□ 0.8
VPS53-201ENST00000291074 HMX1Q9NP08 348 aaPredicted RBP20.07■□□□□ 0.8
VPS53-201ENST00000291074 GBF1Q92538 1859 aa20.07■□□□□ 0.8
VPS53-201ENST00000291074 PMLP29590 882 aa20.06■□□□□ 0.8
VPS53-201ENST00000291074 STC1P52823 247 aa20.06■□□□□ 0.8
VPS53-201ENST00000291074 OXCT1P55809 520 aa20.06■□□□□ 0.8
VPS53-201ENST00000291074 PTPRRQ15256 657 aa20.06■□□□□ 0.8
VPS53-201ENST00000291074 C5orf22Q49AR2 442 aa20.06■□□□□ 0.8
VPS53-201ENST00000291074 ALG1LQ6GMV1 187 aa20.06■□□□□ 0.8
VPS53-201ENST00000291074 FAM126BQ8IXS8 530 aa20.06■□□□□ 0.8
VPS53-201ENST00000291074 GPR150Q8NGU9 434 aa20.06■□□□□ 0.8
VPS53-201ENST00000291074 FAR2Q96K12 515 aa20.06■□□□□ 0.8
VPS53-201ENST00000291074 ZNF599Q96NL3 588 aa20.06■□□□□ 0.8
VPS53-201ENST00000291074 ZBED2Q9BTP6 218 aa20.06■□□□□ 0.8
VPS53-201ENST00000291074 FBRSL1Q9HCM7 1045 aaKnown RBP20.06■□□□□ 0.8
VPS53-201ENST00000291074 CCDC167Q9P0B6 97 aa20.06■□□□□ 0.8
VPS53-201ENST00000291074 SEPT3Q9UH03 358 aa20.06■□□□□ 0.8
VPS53-201ENST00000291074 UBDO15205 165 aa20.06■□□□□ 0.8
VPS53-201ENST00000291074 SNUPNO95149 360 aaKnown RBP20.06■□□□□ 0.8
VPS53-201ENST00000291074 HOXD10P28358 340 aa20.06■□□□□ 0.8
VPS53-201ENST00000291074 ELAVL2Q12926 359 aaKnown RBP20.06■□□□□ 0.8
VPS53-201ENST00000291074 C16orf59Q7L2K0 433 aa20.06■□□□□ 0.8
VPS53-201ENST00000291074 OR4K2Q8NGD2 314 aa20.06■□□□□ 0.8
VPS53-201ENST00000291074 SEPT8Q92599 483 aa20.06■□□□□ 0.8
VPS53-201ENST00000291074 L3HYPDHQ96EM0 354 aa20.06■□□□□ 0.8
VPS53-201ENST00000291074 C3orf30Q96M34 536 aa20.06■□□□□ 0.8
VPS53-201ENST00000291074 PSKH2Q96QS6 385 aa20.06■□□□□ 0.8
VPS53-201ENST00000291074 CYP2S1Q96SQ9 504 aa20.06■□□□□ 0.8
VPS53-201ENST00000291074 KLHL4Q9C0H6 718 aa20.06■□□□□ 0.8
VPS53-201ENST00000291074 COMMD8Q9NX08 183 aa20.06■□□□□ 0.8
VPS53-201ENST00000291074 FAM50BQ9Y247 325 aa20.06■□□□□ 0.8
VPS53-201ENST00000291074 PTGDR2Q9Y5Y4 395 aa20.06■□□□□ 0.8
VPS53-201ENST00000291074 A0A0U1RQS6 177 aa20.05■□□□□ 0.8
VPS53-201ENST00000291074 ZNF840PA6NDX5 716 aa20.05■□□□□ 0.8
VPS53-201ENST00000291074 MYCP01106 439 aaPredicted RBP20.05■□□□□ 0.8
VPS53-201ENST00000291074 SLC11A2P49281 568 aa20.05■□□□□ 0.8
VPS53-201ENST00000291074 CDKN1CP49918 316 aaPredicted RBP20.05■□□□□ 0.8
VPS53-201ENST00000291074 FASTKQ14296 549 aaKnown RBP20.05■□□□□ 0.8
VPS53-201ENST00000291074 AGKQ53H12 422 aa20.05■□□□□ 0.8
VPS53-201ENST00000291074 FBXO48Q5FWF7 155 aa20.05■□□□□ 0.8
VPS53-201ENST00000291074 CRIPAKQ8N1N5 446 aa20.05■□□□□ 0.8
VPS53-201ENST00000291074 AFAP1L2Q8N4X5 818 aa20.05■□□□□ 0.8
VPS53-201ENST00000291074 BHLHE22Q8NFJ8 381 aaPredicted RBP20.05■□□□□ 0.8
VPS53-201ENST00000291074 MDGA1Q8NFP4 955 aa20.05■□□□□ 0.8
VPS53-201ENST00000291074 OR9I1Q8NGQ6 314 aa20.05■□□□□ 0.8
VPS53-201ENST00000291074 AARSD1Q9BTE6 412 aaKnown RBP20.05■□□□□ 0.8
VPS53-201ENST00000291074 SCOCQ9UIL1 159 aa20.05■□□□□ 0.8
VPS53-201ENST00000291074 CBX4O00257 560 aa20.05■□□□□ 0.8
VPS53-201ENST00000291074 ZCCHC18P0CG32 403 aa20.05■□□□□ 0.8
VPS53-201ENST00000291074 CORO1AP31146 461 aaKnown RBP20.05■□□□□ 0.8
VPS53-201ENST00000291074 SLC26A3P40879 764 aa20.05■□□□□ 0.8
VPS53-201ENST00000291074 ZNF140P52738 457 aaPredicted RBP20.05■□□□□ 0.8
VPS53-201ENST00000291074 CDH4P55283 916 aa20.05■□□□□ 0.8
VPS53-201ENST00000291074 HERVK_113P63132 956 aa20.05■□□□□ 0.8
VPS53-201ENST00000291074 SMARCB1Q12824 385 aa20.05■□□□□ 0.8
VPS53-201ENST00000291074 PDAP1Q13442 181 aaKnown RBP20.05■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms