RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 TUBA1CQ9BQE3 449 aa10.37□□□□□ -0.75
UPF3B-201ENST00000276201 CLSTN3Q9BQT9 956 aa10.37□□□□□ -0.75
UPF3B-201ENST00000276201 TMEM79Q9BSE2 394 aa10.37□□□□□ -0.75
UPF3B-201ENST00000276201 NT5C1AQ9BXI3 368 aa10.37□□□□□ -0.75
UPF3B-201ENST00000276201 CD320Q9NPF0 282 aa10.37□□□□□ -0.75
UPF3B-201ENST00000276201 ZNF358Q9NW07 568 aa10.37□□□□□ -0.75
UPF3B-201ENST00000276201 COPG1Q9Y678 874 aaKnown RBP10.37□□□□□ -0.75
UPF3B-201ENST00000276201 hCG_2014768A0A024R1R8 64 aa10.36□□□□□ -0.75
UPF3B-201ENST00000276201 HEATR9A2RTY3 570 aa10.36□□□□□ -0.75
UPF3B-201ENST00000276201 RNF103O00237 685 aa10.36□□□□□ -0.75
UPF3B-201ENST00000276201 ADH1AP07327 375 aa10.36□□□□□ -0.75
UPF3B-201ENST00000276201 SBK3P0C264 359 aa10.36□□□□□ -0.75
UPF3B-201ENST00000276201 SESN2P58004 480 aaPredicted RBP10.36□□□□□ -0.75
UPF3B-201ENST00000276201 CREMQ03060 361 aa10.36□□□□□ -0.75
UPF3B-201ENST00000276201 TJAP1Q5JTD0 557 aa10.36□□□□□ -0.75
UPF3B-201ENST00000276201 PTCRAQ6ISU1 281 aaPredicted RBP10.36□□□□□ -0.75
UPF3B-201ENST00000276201 KRT80Q6KB66 452 aa10.36□□□□□ -0.75
UPF3B-201ENST00000276201 SYCE2Q6PIF2 218 aa10.36□□□□□ -0.75
UPF3B-201ENST00000276201 CMC1Q7Z7K0 106 aa10.36□□□□□ -0.75
UPF3B-201ENST00000276201 KLHDC8BQ8IXV7 354 aa10.36□□□□□ -0.75
UPF3B-201ENST00000276201 LSMEM2Q8N112 164 aa10.36□□□□□ -0.75
UPF3B-201ENST00000276201 KDM1BQ8NB78 822 aa10.36□□□□□ -0.75
UPF3B-201ENST00000276201 SMRP1Q8NCR6 262 aa10.36□□□□□ -0.75
UPF3B-201ENST00000276201 ATP6V1E2Q96A05 226 aa10.36□□□□□ -0.75
UPF3B-201ENST00000276201 SLCO4A1Q96BD0 722 aa10.36□□□□□ -0.75
UPF3B-201ENST00000276201 TMIGD2Q96BF3 282 aa10.36□□□□□ -0.75
UPF3B-201ENST00000276201 BRD8Q9H0E9 1235 aa10.36□□□□□ -0.75
UPF3B-201ENST00000276201 WDR55Q9H6Y2 383 aaPredicted RBP10.36□□□□□ -0.75
UPF3B-201ENST00000276201 MTRRQ9UBK8 725 aa10.36□□□□□ -0.75
UPF3B-201ENST00000276201 PCDHB8Q9UN66 801 aa10.36□□□□□ -0.75
UPF3B-201ENST00000276201 SCN1AP35498 2009 aa10.36□□□□□ -0.75
UPF3B-201ENST00000276201 MYOCOSA0A1B0GUC4 107 aa10.36□□□□□ -0.75
UPF3B-201ENST00000276201 CCDC162PA2VCL2 907 aa10.36□□□□□ -0.75
UPF3B-201ENST00000276201 GRXCR2A6NFK2 248 aa10.36□□□□□ -0.75
UPF3B-201ENST00000276201 M0QZQ0 153 aa10.36□□□□□ -0.75
UPF3B-201ENST00000276201 SDHDO14521 159 aa10.36□□□□□ -0.75
UPF3B-201ENST00000276201 SYN3O14994 580 aa10.36□□□□□ -0.75
UPF3B-201ENST00000276201 AKAP10O43572 662 aa10.36□□□□□ -0.75
UPF3B-201ENST00000276201 AP2A1O95782 977 aa10.36□□□□□ -0.75
UPF3B-201ENST00000276201 LTFP02788 710 aa10.36□□□□□ -0.75
UPF3B-201ENST00000276201 ERVK-10P10266 1014 aa10.36□□□□□ -0.75
UPF3B-201ENST00000276201 PTPN1P18031 435 aaKnown RBP10.36□□□□□ -0.75
UPF3B-201ENST00000276201 GRIA4P48058 902 aa10.36□□□□□ -0.75
UPF3B-201ENST00000276201 NDST1P52848 882 aa10.36□□□□□ -0.75
UPF3B-201ENST00000276201 NME5P56597 212 aa10.36□□□□□ -0.75
UPF3B-201ENST00000276201 LILRA4P59901 499 aa10.36□□□□□ -0.75
UPF3B-201ENST00000276201 GOLGA7BQ2TAP0 167 aa10.36□□□□□ -0.75
UPF3B-201ENST00000276201 ARL13AQ5H913 290 aaPredicted RBP10.36□□□□□ -0.75
UPF3B-201ENST00000276201 SAMD4BQ5PRF9 694 aaKnown RBP10.36□□□□□ -0.75
UPF3B-201ENST00000276201 VARS2Q5ST30 1063 aaKnown RBP10.36□□□□□ -0.75
UPF3B-201ENST00000276201 RSPO2Q6UXX9 243 aaPredicted RBP10.36□□□□□ -0.75
UPF3B-201ENST00000276201 ERMP1Q7Z2K6 904 aa10.36□□□□□ -0.75
UPF3B-201ENST00000276201 PDPRQ8NCN5 879 aa10.36□□□□□ -0.75
UPF3B-201ENST00000276201 TSNARE1Q96NA8 513 aa10.36□□□□□ -0.75
UPF3B-201ENST00000276201 TCF12Q99081 682 aa10.36□□□□□ -0.75
UPF3B-201ENST00000276201 DHX35Q9H5Z1 703 aaKnown RBP10.36□□□□□ -0.75
UPF3B-201ENST00000276201 TMEM181Q9P2C4 612 aa10.36□□□□□ -0.75
UPF3B-201ENST00000276201 GNPTGQ9UJJ9 305 aa10.36□□□□□ -0.75
UPF3B-201ENST00000276201 ZNF638Q14966 1978 aaKnown RBP10.36□□□□□ -0.75
UPF3B-201ENST00000276201 TSC2P49815 1807 aa10.36□□□□□ -0.75
UPF3B-201ENST00000276201 A0A0C4DFX4 3053 aa10.35□□□□□ -0.75
UPF3B-201ENST00000276201 AQP12BA6NM10 295 aa10.35□□□□□ -0.75
UPF3B-201ENST00000276201 MBTPS2O43462 519 aa10.35□□□□□ -0.75
UPF3B-201ENST00000276201 SERPINB7O75635 380 aa10.35□□□□□ -0.75
UPF3B-201ENST00000276201 ITGB3P05106 788 aa10.35□□□□□ -0.75
UPF3B-201ENST00000276201 CHRNGP07510 517 aa10.35□□□□□ -0.75
UPF3B-201ENST00000276201 KRT19P08727 400 aa10.35□□□□□ -0.75
UPF3B-201ENST00000276201 ARL4AP40617 200 aa10.35□□□□□ -0.75
UPF3B-201ENST00000276201 ENTPD1P49961 510 aa10.35□□□□□ -0.75
UPF3B-201ENST00000276201 MPP3Q13368 585 aa10.35□□□□□ -0.75
UPF3B-201ENST00000276201 SMAD4Q13485 552 aaKnown RBP10.35□□□□□ -0.75
UPF3B-201ENST00000276201 MRPL58Q14197 206 aaKnown RBP10.35□□□□□ -0.75
UPF3B-201ENST00000276201 CYTH1Q15438 398 aa10.35□□□□□ -0.75
UPF3B-201ENST00000276201 MOGQ16653 247 aa10.35□□□□□ -0.75
UPF3B-201ENST00000276201 PPP6R3Q5H9R7 873 aaPredicted RBP10.35□□□□□ -0.75
UPF3B-201ENST00000276201 KCTD11Q693B1 232 aa10.35□□□□□ -0.75
UPF3B-201ENST00000276201 HMBOX1Q6NT76 420 aa10.35□□□□□ -0.75
UPF3B-201ENST00000276201 PAOXQ6QHF9 649 aa10.35□□□□□ -0.75
UPF3B-201ENST00000276201 ANKS3Q6ZW76 656 aa10.35□□□□□ -0.75
UPF3B-201ENST00000276201 AQP12AQ8IXF9 295 aa10.35□□□□□ -0.75
UPF3B-201ENST00000276201 PNPT1Q8TCS8 783 aaKnown RBP10.35□□□□□ -0.75
UPF3B-201ENST00000276201 DQX1Q8TE96 717 aaKnown RBP10.35□□□□□ -0.75
UPF3B-201ENST00000276201 CHPT1Q8WUD6 406 aa10.35□□□□□ -0.75
UPF3B-201ENST00000276201 LRTOMTQ8WZ04 291 aa10.35□□□□□ -0.75
UPF3B-201ENST00000276201 P2RY11Q96G91 374 aa10.35□□□□□ -0.75
UPF3B-201ENST00000276201 HPDLQ96IR7 371 aa10.35□□□□□ -0.75
UPF3B-201ENST00000276201 APOL5Q9BWW9 433 aa10.35□□□□□ -0.75
UPF3B-201ENST00000276201 S1PR5Q9H228 398 aa10.35□□□□□ -0.75
UPF3B-201ENST00000276201 CCDC68Q9H2F9 335 aa10.35□□□□□ -0.75
UPF3B-201ENST00000276201 RHOJQ9H4E5 214 aa10.35□□□□□ -0.75
UPF3B-201ENST00000276201 CAAP1Q9H8G2 361 aa10.35□□□□□ -0.75
UPF3B-201ENST00000276201 DZANK1Q9NVP4 752 aa10.35□□□□□ -0.75
UPF3B-201ENST00000276201 BFARQ9NZS9 450 aa10.35□□□□□ -0.75
UPF3B-201ENST00000276201 ZDHHC2Q9UIJ5 367 aa10.35□□□□□ -0.75
UPF3B-201ENST00000276201 CNOT6Q9ULM6 557 aaKnown RBP10.35□□□□□ -0.75
UPF3B-201ENST00000276201 FZD10Q9ULW2 581 aa10.35□□□□□ -0.75
UPF3B-201ENST00000276201 BACE2Q9Y5Z0 518 aa10.35□□□□□ -0.75
UPF3B-201ENST00000276201 SLC30A1Q9Y6M5 507 aa10.35□□□□□ -0.75
UPF3B-201ENST00000276201 TTC28Q96AY4 2481 aa10.35□□□□□ -0.75
UPF3B-201ENST00000276201 TCF20Q9UGU0 1960 aaKnown RBP10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms