RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 CHST10O43529 356 aa11.39□□□□□ -0.59
PTPN4-201ENST00000263708 FSCN1Q16658 493 aaKnown RBP11.39□□□□□ -0.59
PTPN4-201ENST00000263708 GPALPP1Q8IXQ4 340 aa11.39□□□□□ -0.59
PTPN4-201ENST00000263708 PNPT1Q8TCS8 783 aaKnown RBP11.39□□□□□ -0.59
PTPN4-201ENST00000263708 MGME1Q9BQP7 344 aa11.39□□□□□ -0.59
PTPN4-201ENST00000263708 TBC1D10AQ9BXI6 508 aa11.39□□□□□ -0.59
PTPN4-201ENST00000263708 ZCCHC11Q5TAX3 1644 aaKnown RBP11.39□□□□□ -0.59
PTPN4-201ENST00000263708 E2F3O00716 465 aa11.39□□□□□ -0.59
PTPN4-201ENST00000263708 TSPAN4O14817 238 aa11.39□□□□□ -0.59
PTPN4-201ENST00000263708 MAGP20916 626 aa11.39□□□□□ -0.59
PTPN4-201ENST00000263708 DDX6P26196 483 aaKnown RBP eCLIP11.39□□□□□ -0.59
PTPN4-201ENST00000263708 SSR2P43308 183 aa11.39□□□□□ -0.59
PTPN4-201ENST00000263708 KCNJ5P48544 419 aa11.39□□□□□ -0.59
PTPN4-201ENST00000263708 AP3S2P59780 193 aa11.39□□□□□ -0.59
PTPN4-201ENST00000263708 ZNF234Q14588 700 aa11.39□□□□□ -0.59
PTPN4-201ENST00000263708 ATP13A5Q4VNC0 1218 aa11.39□□□□□ -0.59
PTPN4-201ENST00000263708 XKR4Q5GH76 650 aa11.39□□□□□ -0.59
PTPN4-201ENST00000263708 PITRM1Q5JRX3 1037 aa11.39□□□□□ -0.59
PTPN4-201ENST00000263708 COMMD4Q9H0A8 199 aa11.39□□□□□ -0.59
PTPN4-201ENST00000263708 AGO4Q9HCK5 861 aaKnown RBP11.39□□□□□ -0.59
PTPN4-201ENST00000263708 PROSCO94903 275 aa11.39□□□□□ -0.59
PTPN4-201ENST00000263708 INSRRP14616 1297 aa11.39□□□□□ -0.59
PTPN4-201ENST00000263708 DPEP1P16444 411 aa11.39□□□□□ -0.59
PTPN4-201ENST00000263708 ANXA8L1Q5VT79 327 aa11.39□□□□□ -0.59
PTPN4-201ENST00000263708 GPRIN3Q6ZVF9 776 aa11.39□□□□□ -0.59
PTPN4-201ENST00000263708 OR2AJ1Q8NGZ0 328 aa11.39□□□□□ -0.59
PTPN4-201ENST00000263708 OR8D1Q8WZ84 308 aa11.39□□□□□ -0.59
PTPN4-201ENST00000263708 TULP3O75386 442 aa11.39□□□□□ -0.59
PTPN4-201ENST00000263708 ITIH1P19827 911 aa11.39□□□□□ -0.59
PTPN4-201ENST00000263708 BACE1P56817 501 aa11.39□□□□□ -0.59
PTPN4-201ENST00000263708 ADAM8P78325 824 aa11.39□□□□□ -0.59
PTPN4-201ENST00000263708 FOXO4P98177 505 aa11.39□□□□□ -0.59
PTPN4-201ENST00000263708 KCNT2Q6UVM3 1135 aa11.39□□□□□ -0.59
PTPN4-201ENST00000263708 GET4Q7L5D6 327 aaPredicted RBP11.39□□□□□ -0.59
PTPN4-201ENST00000263708 EIF1ADQ8N9N8 165 aaKnown RBP11.39□□□□□ -0.59
PTPN4-201ENST00000263708 TTC29Q8NA56 475 aaPredicted RBP11.39□□□□□ -0.59
PTPN4-201ENST00000263708 GIPC3Q8TF64 312 aa11.39□□□□□ -0.59
PTPN4-201ENST00000263708 ZNF75CPQ92670 426 aaPredicted RBP11.39□□□□□ -0.59
PTPN4-201ENST00000263708 KAT2AQ92830 837 aa11.39□□□□□ -0.59
PTPN4-201ENST00000263708 KLHL5Q96PQ7 755 aa11.39□□□□□ -0.59
PTPN4-201ENST00000263708 POPDC2Q9HBU9 364 aa11.39□□□□□ -0.59
PTPN4-201ENST00000263708 HMX1Q9NP08 348 aaPredicted RBP11.39□□□□□ -0.59
PTPN4-201ENST00000263708 SEC14L3Q9UDX4 400 aa11.39□□□□□ -0.59
PTPN4-201ENST00000263708 CIDEBQ9UHD4 219 aa11.39□□□□□ -0.59
PTPN4-201ENST00000263708 LEF1Q9UJU2 399 aaPredicted RBP11.39□□□□□ -0.59
PTPN4-201ENST00000263708 POLR3HQ9Y535 204 aaPredicted RBP11.39□□□□□ -0.59
PTPN4-201ENST00000263708 PMF1-BGLAPU3KQ54 211 aa11.39□□□□□ -0.59
PTPN4-201ENST00000263708 FAM153BP0C7A2 387 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 HDCP19113 662 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 RASGEF1BQ0VAM2 473 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 TAPT1Q6NXT6 567 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 ABHD5Q8WTS1 349 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 PPP3R2Q96LZ3 170 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 TMEM68Q96MH6 324 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 PHF12Q96QT6 1004 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 C5orf51A6NDU8 294 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 C2orf71A6NGG8 1288 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 LACTBL1A8MY62 500 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 THRBP10828 461 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 CDK7P50613 346 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 CDKL4Q5MAI5 379 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 HSDL2Q6YN16 418 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 KYAT3Q6YP21 454 aaKnown RBP11.38□□□□□ -0.59
PTPN4-201ENST00000263708 C12orf50Q8NA57 414 aaPredicted RBP11.38□□□□□ -0.59
PTPN4-201ENST00000263708 IGDCC4Q8TDY8 1250 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 SIPA1Q96FS4 1042 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 ZNF471Q9BX82 626 aaPredicted RBP11.38□□□□□ -0.59
PTPN4-201ENST00000263708 MMADHCQ9H3L0 296 aaPredicted RBP11.38□□□□□ -0.59
PTPN4-201ENST00000263708 RDH8Q9NYR8 311 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 UPB1Q9UBR1 384 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 CBX6O95503 412 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 AQP1P29972 269 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 SSX6Q7RTT6 188 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 TRPV5Q9NQA5 729 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 ADARB2Q9NS39 739 aaKnown RBP11.38□□□□□ -0.59
PTPN4-201ENST00000263708 KDM6BO15054 1643 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 CNTNAP5Q8WYK1 1306 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 GIMAP1-GIMAP5A0A087WTJ2 511 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 NR2F6P10588 404 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 PSRC1Q6PGN9 363 aaPredicted RBP11.38□□□□□ -0.59
PTPN4-201ENST00000263708 NKAPQ8N5F7 415 aaKnown RBP11.38□□□□□ -0.59
PTPN4-201ENST00000263708 SRFBP1Q8NEF9 429 aaKnown RBP11.38□□□□□ -0.59
PTPN4-201ENST00000263708 AKAP1Q92667 903 aaKnown RBP eCLIP11.38□□□□□ -0.59
PTPN4-201ENST00000263708 DLG3Q92796 817 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 ANKRD12Q6UB98 2062 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 FGF10O15520 208 aaPredicted RBP11.38□□□□□ -0.59
PTPN4-201ENST00000263708 TLL1O43897 1013 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 RPL21P46778 160 aaKnown RBP11.38□□□□□ -0.59
PTPN4-201ENST00000263708 SNAPC1Q16533 368 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 SPIN3Q5JUX0 258 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 HECTD3Q5T447 861 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 TMPRSS11BQ86T26 416 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 CENPSQ8N2Z9 138 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 CKAP2Q8WWK9 683 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 EHD1Q9H4M9 534 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 GSC2O15499 205 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 SLC6A9P48067 706 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 PSMD8P48556 350 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 FOXM1Q08050 763 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 FAAP100Q0VG06 881 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms