RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 NSMCE3Q96MG7 304 aa12.95□□□□□ -0.34
SPTLC1-201ENST00000262554 RAI2Q9Y5P3 530 aa12.95□□□□□ -0.34
SPTLC1-201ENST00000262554 GBF1Q92538 1859 aa12.94□□□□□ -0.34
SPTLC1-201ENST00000262554 KIAA1671Q9BY89 1806 aa12.94□□□□□ -0.34
SPTLC1-201ENST00000262554 NEMP2A6NFY4 417 aa12.94□□□□□ -0.34
SPTLC1-201ENST00000262554 SLC22A2O15244 555 aa12.94□□□□□ -0.34
SPTLC1-201ENST00000262554 EFCAB14O75071 495 aa12.94□□□□□ -0.34
SPTLC1-201ENST00000262554 LUC7L3O95232 432 aaKnown RBP12.94□□□□□ -0.34
SPTLC1-201ENST00000262554 PENKP01210 267 aaPredicted RBP12.94□□□□□ -0.34
SPTLC1-201ENST00000262554 PRLP01236 227 aa12.94□□□□□ -0.34
SPTLC1-201ENST00000262554 COX4I1P13073 169 aa12.94□□□□□ -0.34
SPTLC1-201ENST00000262554 GNAZP19086 355 aa12.94□□□□□ -0.34
SPTLC1-201ENST00000262554 HDCP19113 662 aa12.94□□□□□ -0.34
SPTLC1-201ENST00000262554 EPHA3P29320 983 aa12.94□□□□□ -0.34
SPTLC1-201ENST00000262554 PPM1AP35813 382 aa12.94□□□□□ -0.34
SPTLC1-201ENST00000262554 CCNG1P51959 295 aa12.94□□□□□ -0.34
SPTLC1-201ENST00000262554 ZRSR2Q15696 482 aaKnown RBP12.94□□□□□ -0.34
SPTLC1-201ENST00000262554 TRMT5Q32P41 509 aaKnown RBP12.94□□□□□ -0.34
SPTLC1-201ENST00000262554 SH2D4BQ5SQS7 431 aa12.94□□□□□ -0.34
SPTLC1-201ENST00000262554 ASTLQ6HA08 431 aaPredicted RBP12.94□□□□□ -0.34
SPTLC1-201ENST00000262554 ZNF549Q6P9A3 640 aa12.94□□□□□ -0.34
SPTLC1-201ENST00000262554 TMEM207Q6UWW9 146 aa12.94□□□□□ -0.34
SPTLC1-201ENST00000262554 LINGO4Q6UY18 593 aa12.94□□□□□ -0.34
SPTLC1-201ENST00000262554 PIM3Q86V86 326 aa12.94□□□□□ -0.34
SPTLC1-201ENST00000262554 ARL14EPQ8N8R7 260 aaPredicted RBP12.94□□□□□ -0.34
SPTLC1-201ENST00000262554 KDM1BQ8NB78 822 aa12.94□□□□□ -0.34
SPTLC1-201ENST00000262554 OR4K2Q8NGD2 314 aa12.94□□□□□ -0.34
SPTLC1-201ENST00000262554 TMA16Q96EY4 203 aaKnown RBP12.94□□□□□ -0.34
SPTLC1-201ENST00000262554 TCF12Q99081 682 aa12.94□□□□□ -0.34
SPTLC1-201ENST00000262554 ALG9Q9H6U8 611 aa12.94□□□□□ -0.34
SPTLC1-201ENST00000262554 CYP4F12Q9HCS2 524 aa12.94□□□□□ -0.34
SPTLC1-201ENST00000262554 ZNF334Q9HCZ1 680 aaPredicted RBP12.94□□□□□ -0.34
SPTLC1-201ENST00000262554 GTSE1Q9NYZ3 720 aa12.94□□□□□ -0.34
SPTLC1-201ENST00000262554 VPS28Q9UK41 221 aa12.94□□□□□ -0.34
SPTLC1-201ENST00000262554 PCDHGC4Q9Y5F7 938 aa12.94□□□□□ -0.34
SPTLC1-201ENST00000262554 SNAP91O60641 907 aa12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 SMIM24O75264 130 aa12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 PSMG1O95456 288 aa12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 PDHA1P08559 390 aa12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 LPOP22079 712 aaPredicted RBP12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 MZF1P28698 734 aaPredicted RBP12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 SUOXP51687 545 aa12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 WDR5P61964 334 aaKnown RBP12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 SLC25A3Q00325 362 aa12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 CDH18Q13634 790 aa12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 CCDC6Q16204 474 aa12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 PDCD2Q16342 344 aaPredicted RBP12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 INO80DQ53TQ3 878 aaPredicted RBP12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 TXNDC8Q6A555 127 aa12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 NXNQ6DKJ4 435 aa12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 ISCA2Q86U28 154 aa12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 GPR65Q8IYL9 337 aa12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 KIRREL3Q8IZU9 778 aa12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 MDGA1Q8NFP4 955 aa12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 ANKRD27Q96NW4 1050 aa12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 SLC22A12Q96S37 553 aa12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 TACO1Q9BSH4 297 aaKnown RBP12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 FEM1AQ9BSK4 669 aa12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 AARSD1Q9BTE6 412 aaKnown RBP12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 CCDC68Q9H2F9 335 aa12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 LSM7Q9UK45 103 aaKnown RBP12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 VPS9D1Q9Y2B5 631 aa12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 ASB3Q9Y575 518 aa12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 CPQQ9Y646 472 aa12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 DENND4CQ5VZ89 1909 aa12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 LOC100653049A0A140TA62 436 aa12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 UBA6A0AVT1 1052 aaPredicted RBP12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 ANKRD66B4E2M5 251 aa12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 PFDN6O15212 129 aa12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 TEX28O15482 410 aa12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 NDUFS3O75489 264 aa12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 ZMPSTE24O75844 475 aa12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 KRT34O76011 436 aa12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 OLFM2O95897 454 aa12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 CD160O95971 181 aa12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 THRAP10827 490 aa12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 HNRNPLP14866 589 aaKnown RBP eCLIP12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 CD1DP15813 335 aa12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 IMPDH1P20839 514 aa12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 KCNA5P22460 613 aa12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 PSMA3P25788 255 aa12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 ADSLP30566 484 aaPredicted RBP12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 CA8P35219 290 aa12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 PPARGP37231 505 aaPredicted RBP12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 RHOAP61586 193 aa12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 GALNT1Q10472 559 aaPredicted RBP12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 CUL3Q13618 768 aa12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 RCN1Q15293 331 aa12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 C1orf146Q5VVC0 180 aa12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 NCEH1Q6PIU2 408 aa12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 Q6ZNB5 142 aa12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 CPSF7Q8N684 471 aaKnown RBP12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 ADAMTS19Q8TE59 1207 aa12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 PHF21BQ96EK2 531 aa12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 CLPTM1LQ96KA5 538 aa12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 YME1L1Q96TA2 773 aa12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 RTKNQ9BST9 563 aa12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 OSBPL1AQ9BXW6 950 aa12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 IL21Q9HBE4 155 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms