RNA–Protein interactions for RNA: ENST00000211998.9

VCL-201, Transcript of vinculin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VCL, Length 5,490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-201ENST00000211998 ADGRE2Q9UHX3 823 aa10.46□□□□□ -0.73
VCL-201ENST00000211998 GIT1Q9Y2X7 761 aa10.46□□□□□ -0.73
VCL-201ENST00000211998 PCDHB12Q9Y5F1 795 aa10.46□□□□□ -0.73
VCL-201ENST00000211998 EFCAB9A8MZ26 197 aa10.46□□□□□ -0.73
VCL-201ENST00000211998 HACD1B0YJ81 288 aa10.46□□□□□ -0.73
VCL-201ENST00000211998 RLN1P04808 185 aa10.46□□□□□ -0.73
VCL-201ENST00000211998 NR2F6P10588 404 aa10.46□□□□□ -0.73
VCL-201ENST00000211998 PSKH1P11801 424 aa10.46□□□□□ -0.73
VCL-201ENST00000211998 FKBP1AP62942 108 aaKnown RBP10.46□□□□□ -0.73
VCL-201ENST00000211998 GLYATQ6IB77 296 aa10.46□□□□□ -0.73
VCL-201ENST00000211998 ILDR2Q71H61 639 aa10.46□□□□□ -0.73
VCL-201ENST00000211998 CXXC5Q7LFL8 322 aaKnown RBP10.46□□□□□ -0.73
VCL-201ENST00000211998 ZNF614Q8N883 585 aa10.46□□□□□ -0.73
VCL-201ENST00000211998 EFHD2Q96C19 240 aaPredicted RBP10.46□□□□□ -0.73
VCL-201ENST00000211998 SALL4Q9UJQ4 1053 aa10.46□□□□□ -0.73
VCL-201ENST00000211998 TBC1D24Q9ULP9 559 aa10.46□□□□□ -0.73
VCL-201ENST00000211998 PCDHGC3Q9UN70 934 aa10.46□□□□□ -0.73
VCL-201ENST00000211998 PCDHB5Q9Y5E4 795 aa10.46□□□□□ -0.73
VCL-201ENST00000211998 OR14I1A6ND48 311 aa10.46□□□□□ -0.74
VCL-201ENST00000211998 MANSC4A6NHS7 340 aaPredicted RBP10.46□□□□□ -0.74
VCL-201ENST00000211998 SLC22A1O15245 554 aa10.46□□□□□ -0.74
VCL-201ENST00000211998 ALDH2P05091 517 aa10.46□□□□□ -0.74
VCL-201ENST00000211998 TKTL1P51854 596 aa10.46□□□□□ -0.74
VCL-201ENST00000211998 SLC18A2Q05940 514 aa10.46□□□□□ -0.74
VCL-201ENST00000211998 ELP6Q0PNE2 266 aa10.46□□□□□ -0.74
VCL-201ENST00000211998 LSAMPQ13449 338 aa10.46□□□□□ -0.74
VCL-201ENST00000211998 MYBPC3Q14896 1274 aa10.46□□□□□ -0.74
VCL-201ENST00000211998 ZNF410Q86VK4 478 aa10.46□□□□□ -0.74
VCL-201ENST00000211998 MTFMTQ96DP5 389 aaKnown RBP10.46□□□□□ -0.74
VCL-201ENST00000211998 CELF6Q96J87 481 aaKnown RBP10.46□□□□□ -0.74
VCL-201ENST00000211998 SLC22A4Q9H015 551 aa10.46□□□□□ -0.74
VCL-201ENST00000211998 TRIT1Q9H3H1 467 aaKnown RBP10.46□□□□□ -0.74
VCL-201ENST00000211998 RBM22Q9NW64 420 aaKnown RBP eCLIP10.46□□□□□ -0.745e-7■■■■□ 25.8
VCL-201ENST00000211998 CLUHO75153 1309 aa10.46□□□□□ -0.74
VCL-201ENST00000211998 DDTLA6NHG4 134 aaPredicted RBP10.46□□□□□ -0.74
VCL-201ENST00000211998 CALCAP01258 141 aa10.46□□□□□ -0.74
VCL-201ENST00000211998 CCR1P32246 355 aa10.46□□□□□ -0.74
VCL-201ENST00000211998 PRKG2Q13237 762 aa10.46□□□□□ -0.74
VCL-201ENST00000211998 GRIK4Q16099 956 aa10.46□□□□□ -0.74
VCL-201ENST00000211998 SFT2D3Q587I9 215 aa10.46□□□□□ -0.74
VCL-201ENST00000211998 METTL21CQ5VZV1 264 aa10.46□□□□□ -0.74
VCL-201ENST00000211998 VSTM1Q6UX27 236 aa10.46□□□□□ -0.74
VCL-201ENST00000211998 DEF8Q6ZN54 512 aa10.46□□□□□ -0.74
VCL-201ENST00000211998 USP43Q70EL4 1123 aa10.46□□□□□ -0.74
VCL-201ENST00000211998 SPAG16Q8N0X2 631 aa10.46□□□□□ -0.74
VCL-201ENST00000211998 SPATA6LQ8N4H0 392 aa10.46□□□□□ -0.74
VCL-201ENST00000211998 CNTD1Q8N815 330 aa10.46□□□□□ -0.74
VCL-201ENST00000211998 PLEKHO2Q8TD55 490 aa10.46□□□□□ -0.74
VCL-201ENST00000211998 TBL1YQ9BQ87 522 aa10.46□□□□□ -0.74
VCL-201ENST00000211998 UNC93B1Q9H1C4 597 aa10.46□□□□□ -0.74
VCL-201ENST00000211998 XPR1Q9UBH6 696 aa10.46□□□□□ -0.74
VCL-201ENST00000211998 ZNF112Q9UJU3 913 aa10.46□□□□□ -0.74
VCL-201ENST00000211998 DDX52Q9Y2R4 599 aaKnown RBP eCLIP10.46□□□□□ -0.74
VCL-201ENST00000211998 ST14Q9Y5Y6 855 aa10.46□□□□□ -0.74
VCL-201ENST00000211998 LINC00032P0C843 101 aa10.45□□□□□ -0.74
VCL-201ENST00000211998 PSMA1P25786 263 aaKnown RBP10.45□□□□□ -0.74
VCL-201ENST00000211998 HOXD12P35452 270 aa10.45□□□□□ -0.74
VCL-201ENST00000211998 CRATP43155 626 aa10.45□□□□□ -0.74
VCL-201ENST00000211998 ZNF135P52742 658 aaPredicted RBP10.45□□□□□ -0.74
VCL-201ENST00000211998 MERTKQ12866 999 aa10.45□□□□□ -0.74
VCL-201ENST00000211998 TGFBIQ15582 683 aa10.45□□□□□ -0.74
VCL-201ENST00000211998 SLC27A1Q6PCB7 646 aa10.45□□□□□ -0.74
VCL-201ENST00000211998 ADGRD1Q6QNK2 874 aa10.45□□□□□ -0.74
VCL-201ENST00000211998 SCIMPQ6UWF3 145 aa10.45□□□□□ -0.74
VCL-201ENST00000211998 ZPBP2Q6X784 338 aa10.45□□□□□ -0.74
VCL-201ENST00000211998 SYT12Q8IV01 421 aa10.45□□□□□ -0.74
VCL-201ENST00000211998 ENDOVQ8N8Q3 282 aaKnown RBP10.45□□□□□ -0.74
VCL-201ENST00000211998 RNASE11Q8TAA1 199 aaKnown RBP10.45□□□□□ -0.74
VCL-201ENST00000211998 MRPL57Q9BQC6 102 aaKnown RBP10.45□□□□□ -0.74
VCL-201ENST00000211998 GDAP2Q9NXN4 497 aa10.45□□□□□ -0.74
VCL-201ENST00000211998 PSME2Q9UL46 239 aa10.45□□□□□ -0.74
VCL-201ENST00000211998 CRYL1Q9Y2S2 319 aa10.45□□□□□ -0.74
VCL-201ENST00000211998 GAKO14976 1311 aa10.45□□□□□ -0.74
VCL-201ENST00000211998 STAU1O95793 577 aaKnown RBP10.45□□□□□ -0.74
VCL-201ENST00000211998 NTRK1P04629 796 aa10.45□□□□□ -0.74
VCL-201ENST00000211998 COX7A2P14406 83 aa10.45□□□□□ -0.74
VCL-201ENST00000211998 IDO1P14902 403 aa10.45□□□□□ -0.74
VCL-201ENST00000211998 PRKACBP22694 351 aa10.45□□□□□ -0.74
VCL-201ENST00000211998 VARSP26640 1264 aaKnown RBP10.45□□□□□ -0.74
VCL-201ENST00000211998 SPIBQ01892 262 aa10.45□□□□□ -0.74
VCL-201ENST00000211998 E2F2Q14209 437 aa10.45□□□□□ -0.74
VCL-201ENST00000211998 RETSATQ6NUM9 610 aa10.45□□□□□ -0.74
VCL-201ENST00000211998 TMEM214Q6NUQ4 689 aaKnown RBP10.45□□□□□ -0.74
VCL-201ENST00000211998 MOSPD2Q8NHP6 518 aa10.45□□□□□ -0.74
VCL-201ENST00000211998 CNPPD1Q9BV87 410 aa10.45□□□□□ -0.74
VCL-201ENST00000211998 MRPL9Q9BYD2 267 aaKnown RBP10.45□□□□□ -0.74
VCL-201ENST00000211998 RDH8Q9NYR8 311 aa10.45□□□□□ -0.74
VCL-201ENST00000211998 TRHDEQ9UKU6 1024 aa10.45□□□□□ -0.74
VCL-201ENST00000211998 FABP12A6NFH5 140 aa10.45□□□□□ -0.74
VCL-201ENST00000211998 CLPXO76031 633 aa10.45□□□□□ -0.74
VCL-201ENST00000211998 MXD1Q05195 221 aa10.45□□□□□ -0.74
VCL-201ENST00000211998 CXCL9Q07325 125 aa10.45□□□□□ -0.74
VCL-201ENST00000211998 LRRC38Q5VT99 294 aa10.45□□□□□ -0.74
VCL-201ENST00000211998 CMC1Q7Z7K0 106 aa10.45□□□□□ -0.74
VCL-201ENST00000211998 LZTR1Q8N653 840 aa10.45□□□□□ -0.74
VCL-201ENST00000211998 ZNF655Q8N720 491 aaPredicted RBP10.45□□□□□ -0.74
VCL-201ENST00000211998 PHF10Q8WUB8 498 aaKnown RBP10.45□□□□□ -0.74
VCL-201ENST00000211998 SOCS4Q8WXH5 440 aa10.45□□□□□ -0.74
VCL-201ENST00000211998 ATXN3LQ9H3M9 355 aa10.45□□□□□ -0.74
VCL-201ENST00000211998 PRDM16Q9HAZ2 1276 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms