RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 PCDHGB4Q9UN71 923 aa12.8□□□□□ -0.36
LINC00540-203ENST00000631321 LZTS1Q9Y250 596 aa12.8□□□□□ -0.36
LINC00540-203ENST00000631321 PCDHGB5Q9Y5G0 923 aa12.8□□□□□ -0.36
LINC00540-203ENST00000631321 F8W810 466 aa12.8□□□□□ -0.36
LINC00540-203ENST00000631321 MRASO14807 208 aa12.8□□□□□ -0.36
LINC00540-203ENST00000631321 NRP2O60462 931 aa12.8□□□□□ -0.36
LINC00540-203ENST00000631321 CLPTM1O96005 669 aa12.8□□□□□ -0.36
LINC00540-203ENST00000631321 ATXN3P54252 364 aaPredicted RBP12.8□□□□□ -0.36
LINC00540-203ENST00000631321 HERVK_113P63132 956 aa12.8□□□□□ -0.36
LINC00540-203ENST00000631321 APOFQ13790 326 aa12.8□□□□□ -0.36
LINC00540-203ENST00000631321 LPIN1Q14693 890 aa12.8□□□□□ -0.36
LINC00540-203ENST00000631321 SLC39A12Q504Y0 691 aa12.8□□□□□ -0.36
LINC00540-203ENST00000631321 SAMD4BQ5PRF9 694 aaKnown RBP12.8□□□□□ -0.36
LINC00540-203ENST00000631321 C6orf52Q5T4I8 152 aa12.8□□□□□ -0.36
LINC00540-203ENST00000631321 GPR158Q5T848 1215 aa12.8□□□□□ -0.36
LINC00540-203ENST00000631321 AP1ARQ63HQ0 302 aa12.8□□□□□ -0.36
LINC00540-203ENST00000631321 TFAP2DQ7Z6R9 452 aa12.8□□□□□ -0.36
LINC00540-203ENST00000631321 LPGAT1Q92604 370 aa12.8□□□□□ -0.36
LINC00540-203ENST00000631321 FUBP3Q96I24 572 aaKnown RBP eCLIP12.8□□□□□ -0.36
LINC00540-203ENST00000631321 ZNF597Q96LX8 424 aa12.8□□□□□ -0.36
LINC00540-203ENST00000631321 ADAM2Q99965 735 aa12.8□□□□□ -0.36
LINC00540-203ENST00000631321 ERVK-6Q9BXR3 956 aa12.8□□□□□ -0.36
LINC00540-203ENST00000631321 CCDC167Q9P0B6 97 aa12.8□□□□□ -0.36
LINC00540-203ENST00000631321 CROTQ9UKG9 612 aa12.8□□□□□ -0.36
LINC00540-203ENST00000631321 BPTFQ12830 3046 aa12.79□□□□□ -0.36
LINC00540-203ENST00000631321 TNPO2O14787 897 aaKnown RBP12.79□□□□□ -0.36
LINC00540-203ENST00000631321 CNTN5O94779 1100 aa12.79□□□□□ -0.36
LINC00540-203ENST00000631321 OAZ2O95190 189 aa12.79□□□□□ -0.36
LINC00540-203ENST00000631321 CELF2O95319 508 aaKnown RBP12.79□□□□□ -0.36
LINC00540-203ENST00000631321 PGM3O95394 542 aa12.79□□□□□ -0.36
LINC00540-203ENST00000631321 FGF4P08620 206 aa12.79□□□□□ -0.36
LINC00540-203ENST00000631321 OR4Q2P0C623 313 aa12.79□□□□□ -0.36
LINC00540-203ENST00000631321 FAM58BPP0C7Q3 252 aa12.79□□□□□ -0.36
LINC00540-203ENST00000631321 SLC7A1P30825 629 aa12.79□□□□□ -0.36
LINC00540-203ENST00000631321 THPOP40225 353 aa12.79□□□□□ -0.36
LINC00540-203ENST00000631321 PRAMEP78395 509 aa12.79□□□□□ -0.36
LINC00540-203ENST00000631321 TIAL1Q01085 375 aaKnown RBP eCLIP12.79□□□□□ -0.36
LINC00540-203ENST00000631321 ITKQ08881 620 aa12.79□□□□□ -0.36
LINC00540-203ENST00000631321 BTG3Q14201 252 aaPredicted RBP12.79□□□□□ -0.36
LINC00540-203ENST00000631321 TAF1CQ15572 869 aaPredicted RBP12.79□□□□□ -0.36
LINC00540-203ENST00000631321 ALFQ53S48 1182 aa12.79□□□□□ -0.36
LINC00540-203ENST00000631321 C6orf10Q5SRN2 563 aa12.79□□□□□ -0.36
LINC00540-203ENST00000631321 SCN4BQ8IWT1 228 aa12.79□□□□□ -0.36
LINC00540-203ENST00000631321 NUP93Q8N1F7 819 aa12.79□□□□□ -0.36
LINC00540-203ENST00000631321 PGBD5Q8N414 524 aa12.79□□□□□ -0.36
LINC00540-203ENST00000631321 OR6P1Q8NGX9 317 aa12.79□□□□□ -0.36
LINC00540-203ENST00000631321 SLCO4A1Q96BD0 722 aa12.79□□□□□ -0.36
LINC00540-203ENST00000631321 PTERQ96BW5 349 aa12.79□□□□□ -0.36
LINC00540-203ENST00000631321 ROPN1LQ96C74 230 aa12.79□□□□□ -0.36
LINC00540-203ENST00000631321 C19orf60Q96EN9 201 aa12.79□□□□□ -0.36
LINC00540-203ENST00000631321 CNBD2Q96M20 576 aa12.79□□□□□ -0.36
LINC00540-203ENST00000631321 ASB2Q96Q27 587 aa12.79□□□□□ -0.36
LINC00540-203ENST00000631321 PCDHAC1Q9H158 963 aa12.79□□□□□ -0.36
LINC00540-203ENST00000631321 FBXO44Q9H4M3 255 aa12.79□□□□□ -0.36
LINC00540-203ENST00000631321 SP110Q9HB58 689 aa12.79□□□□□ -0.36
LINC00540-203ENST00000631321 POPDC3Q9HBV1 291 aa12.79□□□□□ -0.36
LINC00540-203ENST00000631321 POLR3BQ9NW08 1133 aaPredicted RBP12.79□□□□□ -0.36
LINC00540-203ENST00000631321 IL37Q9NZH6 218 aa12.79□□□□□ -0.36
LINC00540-203ENST00000631321 RIMKLBQ9ULI2 386 aa12.79□□□□□ -0.36
LINC00540-203ENST00000631321 DRGXA6NNA5 263 aa12.79□□□□□ -0.36
LINC00540-203ENST00000631321 BBIP1A8MTZ0 92 aa12.79□□□□□ -0.36
LINC00540-203ENST00000631321 OR6B1O95007 311 aa12.79□□□□□ -0.36
LINC00540-203ENST00000631321 RTN3O95197 1032 aaPredicted RBP12.79□□□□□ -0.36
LINC00540-203ENST00000631321 CD1DP15813 335 aa12.79□□□□□ -0.36
LINC00540-203ENST00000631321 HDCP19113 662 aa12.79□□□□□ -0.36
LINC00540-203ENST00000631321 GPX3P22352 226 aa12.79□□□□□ -0.36
LINC00540-203ENST00000631321 IL10RBQ08334 325 aa12.79□□□□□ -0.36
LINC00540-203ENST00000631321 LAMB3Q13751 1172 aa12.79□□□□□ -0.36
LINC00540-203ENST00000631321 CHERPQ8IWX8 916 aaKnown RBP12.79□□□□□ -0.36
LINC00540-203ENST00000631321 DCP1BQ8IZD4 617 aaKnown RBP12.79□□□□□ -0.36
LINC00540-203ENST00000631321 CLYBLQ8N0X4 340 aa12.79□□□□□ -0.36
LINC00540-203ENST00000631321 GALNT4Q8N4A0 578 aa12.79□□□□□ -0.36
LINC00540-203ENST00000631321 PSMG2Q969U7 264 aa12.79□□□□□ -0.36
LINC00540-203ENST00000631321 PABPC5Q96DU9 382 aaKnown RBP12.79□□□□□ -0.36
LINC00540-203ENST00000631321 RBM38Q9H0Z9 239 aaKnown RBP12.79□□□□□ -0.36
LINC00540-203ENST00000631321 RGS18Q9NS28 235 aa12.79□□□□□ -0.36
LINC00540-203ENST00000631321 UXTQ9UBK9 157 aaPredicted RBP12.79□□□□□ -0.36
LINC00540-203ENST00000631321 CLGNO14967 610 aa12.78□□□□□ -0.36
LINC00540-203ENST00000631321 VILLO15195 856 aa12.78□□□□□ -0.36
LINC00540-203ENST00000631321 SRP72O76094 671 aaKnown RBP12.78□□□□□ -0.36
LINC00540-203ENST00000631321 CYBAP13498 195 aa12.78□□□□□ -0.36
LINC00540-203ENST00000631321 YWHAQP27348 245 aa12.78□□□□□ -0.36
LINC00540-203ENST00000631321 TXNL4AP83876 142 aaKnown RBP12.78□□□□□ -0.36
LINC00540-203ENST00000631321 RALGDSQ12967 914 aa12.78□□□□□ -0.36
LINC00540-203ENST00000631321 GK3PQ14409 553 aa12.78□□□□□ -0.36
LINC00540-203ENST00000631321 CLEC6AQ6EIG7 209 aa12.78□□□□□ -0.36
LINC00540-203ENST00000631321 ZNF549Q6P9A3 640 aa12.78□□□□□ -0.36
LINC00540-203ENST00000631321 LDB1Q86U70 411 aaPredicted RBP12.78□□□□□ -0.36
LINC00540-203ENST00000631321 PIM3Q86V86 326 aa12.78□□□□□ -0.36
LINC00540-203ENST00000631321 FUNDC1Q8IVP5 155 aa12.78□□□□□ -0.36
LINC00540-203ENST00000631321 METTL25Q8N6Q8 603 aa12.78□□□□□ -0.36
LINC00540-203ENST00000631321 PNPLA1Q8N8W4 532 aa12.78□□□□□ -0.36
LINC00540-203ENST00000631321 ATP6V0D2Q8N8Y2 350 aa12.78□□□□□ -0.36
LINC00540-203ENST00000631321 SH3RF2Q8TEC5 729 aa12.78□□□□□ -0.36
LINC00540-203ENST00000631321 BTN2A3PQ96KV6 586 aa12.78□□□□□ -0.36
LINC00540-203ENST00000631321 GPATCH1Q9BRR8 931 aaKnown RBP12.78□□□□□ -0.36
LINC00540-203ENST00000631321 ABI2Q9NYB9 513 aaPredicted RBP12.78□□□□□ -0.36
LINC00540-203ENST00000631321 MTF2Q9Y483 593 aaPredicted RBP12.78□□□□□ -0.36
LINC00540-203ENST00000631321 KCTD3Q9Y597 815 aa12.78□□□□□ -0.36
LINC00540-203ENST00000631321 FAM92AA1XBS5 289 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms