RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 WDR24Q96S15 920 aa18.16■□□□□ 0.5
CLN3-239ENST00000628023 C1QTNF7Q9BXJ2 289 aa18.16■□□□□ 0.5
CLN3-239ENST00000628023 SLC17A9Q9BYT1 436 aa18.16■□□□□ 0.5
CLN3-239ENST00000628023 FZD3Q9NPG1 666 aa18.16■□□□□ 0.5
CLN3-239ENST00000628023 KCND1Q9NSA2 647 aa18.16■□□□□ 0.5
CLN3-239ENST00000628023 B4GALT6Q9UBX8 382 aa18.16■□□□□ 0.5
CLN3-239ENST00000628023 FAM153AQ9UHL3 310 aa18.16■□□□□ 0.5
CLN3-239ENST00000628023 WASF3Q9UPY6 502 aa18.16■□□□□ 0.5
CLN3-239ENST00000628023 ZKSCAN5Q9Y2L8 839 aa18.16■□□□□ 0.5
CLN3-239ENST00000628023 TRPM6Q9BX84 2022 aa18.15■□□□□ 0.5
CLN3-239ENST00000628023 CACNA1EQ15878 2313 aa18.15■□□□□ 0.5
CLN3-239ENST00000628023 SPAARA0A1B0GVQ0 90 aa18.15■□□□□ 0.5
CLN3-239ENST00000628023 CTAGE9A4FU28 777 aa18.15■□□□□ 0.5
CLN3-239ENST00000628023 C1QTNF9BB2RNN3 333 aa18.15■□□□□ 0.5
CLN3-239ENST00000628023 PGRMC1O00264 195 aaKnown RBP18.15■□□□□ 0.5
CLN3-239ENST00000628023 FZD6O60353 706 aa18.15■□□□□ 0.5
CLN3-239ENST00000628023 IFNB1P01574 187 aa18.15■□□□□ 0.5
CLN3-239ENST00000628023 C1QTNF9P0C862 333 aa18.15■□□□□ 0.5
CLN3-239ENST00000628023 TCP1P17987 556 aaKnown RBP18.15■□□□□ 0.5
CLN3-239ENST00000628023 HNRNPA2B1P22626 353 aaKnown RBP18.15■□□□□ 0.5
CLN3-239ENST00000628023 PSMB4P28070 264 aa18.15■□□□□ 0.5
CLN3-239ENST00000628023 VIPR1P32241 457 aa18.15■□□□□ 0.5
CLN3-239ENST00000628023 ACTN2P35609 894 aa18.15■□□□□ 0.5
CLN3-239ENST00000628023 GRIA4P48058 902 aa18.15■□□□□ 0.5
CLN3-239ENST00000628023 LIG3P49916 1009 aa18.15■□□□□ 0.5
CLN3-239ENST00000628023 RPL26P61254 145 aaKnown RBP18.15■□□□□ 0.5
CLN3-239ENST00000628023 ARHGEF7Q14155 803 aa18.15■□□□□ 0.5
CLN3-239ENST00000628023 GALNT3Q14435 633 aa18.15■□□□□ 0.5
CLN3-239ENST00000628023 IHHQ14623 411 aa18.15■□□□□ 0.5
CLN3-239ENST00000628023 STAT4Q14765 748 aa18.15■□□□□ 0.5
CLN3-239ENST00000628023 CCDC70Q6NSX1 233 aa18.15■□□□□ 0.5
CLN3-239ENST00000628023 DPPA4Q7L190 304 aa18.15■□□□□ 0.5
CLN3-239ENST00000628023 RASGEF1CQ8N431 466 aa18.15■□□□□ 0.5
CLN3-239ENST00000628023 CCDC89Q8N998 374 aa18.15■□□□□ 0.5
CLN3-239ENST00000628023 IPMKQ8NFU5 416 aa18.15■□□□□ 0.5
CLN3-239ENST00000628023 COG1Q8WTW3 980 aa18.15■□□□□ 0.5
CLN3-239ENST00000628023 PIH1D2Q8WWB5 315 aa18.15■□□□□ 0.5
CLN3-239ENST00000628023 ORAI3Q9BRQ5 295 aa18.15■□□□□ 0.5
CLN3-239ENST00000628023 FSD1LQ9BXM9 530 aa18.15■□□□□ 0.5
CLN3-239ENST00000628023 EBF2Q9HAK2 575 aa18.15■□□□□ 0.5
CLN3-239ENST00000628023 USP29Q9HBJ7 922 aa18.15■□□□□ 0.5
CLN3-239ENST00000628023 RPL26L1Q9UNX3 145 aaKnown RBP18.15■□□□□ 0.5
CLN3-239ENST00000628023 SLCO1B1Q9Y6L6 691 aa18.15■□□□□ 0.5
CLN3-239ENST00000628023 A0A0J9YYE9 177 aa18.14■□□□□ 0.49
CLN3-239ENST00000628023 C5orf60A6NFR6 353 aa18.14■□□□□ 0.49
CLN3-239ENST00000628023 PRAMEF26H0Y7S4 382 aa18.14■□□□□ 0.49
CLN3-239ENST00000628023 ANXA9O76027 345 aa18.14■□□□□ 0.49
CLN3-239ENST00000628023 PAK4O96013 591 aaPredicted RBP18.14■□□□□ 0.49
CLN3-239ENST00000628023 TRBC1P01850 177 aa18.14■□□□□ 0.49
CLN3-239ENST00000628023 ALPIP09923 528 aa18.14■□□□□ 0.49
CLN3-239ENST00000628023 C6P13671 934 aa18.14■□□□□ 0.49
CLN3-239ENST00000628023 GEMP55040 296 aa18.14■□□□□ 0.49
CLN3-239ENST00000628023 GDF10P55107 478 aa18.14■□□□□ 0.49
CLN3-239ENST00000628023 C21orf59P57076 290 aa18.14■□□□□ 0.49
CLN3-239ENST00000628023 CDK18Q07002 472 aa18.14■□□□□ 0.49
CLN3-239ENST00000628023 RALGDSQ12967 914 aa18.14■□□□□ 0.49
CLN3-239ENST00000628023 MPP3Q13368 585 aa18.14■□□□□ 0.49
CLN3-239ENST00000628023 SIX1Q15475 284 aaPredicted RBP18.14■□□□□ 0.49
CLN3-239ENST00000628023 OASLQ15646 514 aaKnown RBP18.14■□□□□ 0.49
CLN3-239ENST00000628023 CCNG2Q16589 344 aa18.14■□□□□ 0.49
CLN3-239ENST00000628023 DENND2CQ68D51 928 aa18.14■□□□□ 0.49
CLN3-239ENST00000628023 OR2I1PQ8NGU4 316 aa18.14■□□□□ 0.49
CLN3-239ENST00000628023 SKA1Q96BD8 255 aa18.14■□□□□ 0.49
CLN3-239ENST00000628023 LRRC45Q96CN5 670 aa18.14■□□□□ 0.49
CLN3-239ENST00000628023 PPP1R2P1Q96PQ5 205 aa18.14■□□□□ 0.49
CLN3-239ENST00000628023 HOMER3Q9NSC5 361 aa18.14■□□□□ 0.49
CLN3-239ENST00000628023 COQ6Q9Y2Z9 468 aa18.14■□□□□ 0.49
CLN3-239ENST00000628023 NEUROG3Q9Y4Z2 214 aa18.14■□□□□ 0.49
CLN3-239ENST00000628023 GOLGA6CA6NDK9 693 aa18.13■□□□□ 0.49
CLN3-239ENST00000628023 GOLGA6BA6NDN3 693 aa18.13■□□□□ 0.49
CLN3-239ENST00000628023 NPIPB15A6NHN6 443 aaPredicted RBP18.13■□□□□ 0.49
CLN3-239ENST00000628023 C10orf142B7Z368 130 aa18.13■□□□□ 0.49
CLN3-239ENST00000628023 CES2O00748 559 aa18.13■□□□□ 0.49
CLN3-239ENST00000628023 HYAL3O43820 417 aaPredicted RBP18.13■□□□□ 0.49
CLN3-239ENST00000628023 TOP3BO95985 862 aaKnown RBP18.13■□□□□ 0.49
CLN3-239ENST00000628023 ITGAVP06756 1048 aa18.13■□□□□ 0.49
CLN3-239ENST00000628023 GOLGA6DP0CG33 693 aa18.13■□□□□ 0.49
CLN3-239ENST00000628023 CD59P13987 128 aa18.13■□□□□ 0.49
CLN3-239ENST00000628023 CD38P28907 300 aa18.13■□□□□ 0.49
CLN3-239ENST00000628023 STIP1P31948 543 aaKnown RBP18.13■□□□□ 0.49
CLN3-239ENST00000628023 CSNK1EP49674 416 aaKnown RBP18.13■□□□□ 0.49
CLN3-239ENST00000628023 WNT3AP56704 352 aa18.13■□□□□ 0.49
CLN3-239ENST00000628023 FGL2Q14314 439 aa18.13■□□□□ 0.49
CLN3-239ENST00000628023 ACOX1Q15067 660 aa18.13■□□□□ 0.49
CLN3-239ENST00000628023 ZNF423Q2M1K9 1284 aa18.13■□□□□ 0.49
CLN3-239ENST00000628023 P3H1Q32P28 736 aa18.13■□□□□ 0.49
CLN3-239ENST00000628023 IL27RAQ6UWB1 636 aa18.13■□□□□ 0.49
CLN3-239ENST00000628023 LAYNQ6UX15 382 aa18.13■□□□□ 0.49
CLN3-239ENST00000628023 GSTA5Q7RTV2 222 aa18.13■□□□□ 0.49
CLN3-239ENST00000628023 C1orf216Q8TAB5 229 aa18.13■□□□□ 0.49
CLN3-239ENST00000628023 TADA1Q96BN2 335 aa18.13■□□□□ 0.49
CLN3-239ENST00000628023 SCRN2Q96FV2 425 aa18.13■□□□□ 0.49
CLN3-239ENST00000628023 OXNAD1Q96HP4 312 aaPredicted RBP18.13■□□□□ 0.49
CLN3-239ENST00000628023 MLPHQ9BV36 600 aaPredicted RBP18.13■□□□□ 0.49
CLN3-239ENST00000628023 C1QTNF2Q9BXJ5 285 aa18.13■□□□□ 0.49
CLN3-239ENST00000628023 GOLGA6AQ9NYA3 693 aa18.13■□□□□ 0.49
CLN3-239ENST00000628023 CA5BQ9Y2D0 317 aa18.13■□□□□ 0.49
CLN3-239ENST00000628023 AAR2Q9Y312 384 aaKnown RBP18.13■□□□□ 0.49
CLN3-239ENST00000628023 PCDH15Q96QU1 1955 aa18.13■□□□□ 0.49
CLN3-239ENST00000628023 PLXNA2O75051 1894 aa18.12■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 110 ms