RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 TUFMP49411 452 aaKnown RBP10.65□□□□□ -0.7
CUX1-221ENST00000622516 RAP1GDS1P52306 607 aa10.65□□□□□ -0.7
CUX1-221ENST00000622516 TECRLQ5HYJ1 363 aa10.65□□□□□ -0.7
CUX1-221ENST00000622516 TXNDC8Q6A555 127 aa10.65□□□□□ -0.7
CUX1-221ENST00000622516 CLEC6AQ6EIG7 209 aa10.65□□□□□ -0.7
CUX1-221ENST00000622516 SNX32Q86XE0 403 aa10.65□□□□□ -0.7
CUX1-221ENST00000622516 ARHGAP24Q8N264 748 aa10.65□□□□□ -0.7
CUX1-221ENST00000622516 KDM1BQ8NB78 822 aa10.65□□□□□ -0.7
CUX1-221ENST00000622516 LPCAT1Q8NF37 534 aa10.65□□□□□ -0.7
CUX1-221ENST00000622516 MDGA1Q8NFP4 955 aa10.65□□□□□ -0.7
CUX1-221ENST00000622516 ZNF461Q8TAF7 563 aa10.65□□□□□ -0.7
CUX1-221ENST00000622516 DIS3LQ8TF46 1054 aaKnown RBP10.65□□□□□ -0.7
CUX1-221ENST00000622516 PTERQ96BW5 349 aa10.65□□□□□ -0.7
CUX1-221ENST00000622516 CMTM5Q96DZ9 223 aa10.65□□□□□ -0.7
CUX1-221ENST00000622516 RSRC1Q96IZ7 334 aaKnown RBP10.65□□□□□ -0.7
CUX1-221ENST00000622516 MMADHCQ9H3L0 296 aaPredicted RBP10.65□□□□□ -0.7
CUX1-221ENST00000622516 MFSD1Q9H3U5 465 aa10.65□□□□□ -0.7
CUX1-221ENST00000622516 NCKIPSDQ9NZQ3 722 aa10.65□□□□□ -0.7
CUX1-221ENST00000622516 TRPM5Q9NZQ8 1165 aa10.65□□□□□ -0.7
CUX1-221ENST00000622516 CAMSAP3Q9P1Y5 1249 aaPredicted RBP10.65□□□□□ -0.7
CUX1-221ENST00000622516 TSR3Q9UJK0 312 aaKnown RBP10.65□□□□□ -0.7
CUX1-221ENST00000622516 A0A087X1B8 175 aa10.65□□□□□ -0.71
CUX1-221ENST00000622516 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP10.65□□□□□ -0.71
CUX1-221ENST00000622516 CFLARO15519 480 aa10.65□□□□□ -0.71
CUX1-221ENST00000622516 HOXA2O43364 376 aa10.65□□□□□ -0.71
CUX1-221ENST00000622516 CIB2O75838 187 aa10.65□□□□□ -0.71
CUX1-221ENST00000622516 SIX3O95343 332 aaPredicted RBP10.65□□□□□ -0.71
CUX1-221ENST00000622516 MZF1P28698 734 aaPredicted RBP10.65□□□□□ -0.71
CUX1-221ENST00000622516 FMO4P31512 558 aa10.65□□□□□ -0.71
CUX1-221ENST00000622516 ALDH1A3P47895 512 aa10.65□□□□□ -0.71
CUX1-221ENST00000622516 TWF1Q12792 350 aa10.65□□□□□ -0.71
CUX1-221ENST00000622516 ZNF177Q13360 481 aaPredicted RBP10.65□□□□□ -0.71
CUX1-221ENST00000622516 NAA25Q14CX7 972 aa10.65□□□□□ -0.71
CUX1-221ENST00000622516 TBCCQ15814 346 aa10.65□□□□□ -0.71
CUX1-221ENST00000622516 PPP1R3AQ16821 1122 aa10.65□□□□□ -0.71
CUX1-221ENST00000622516 LRRC36Q1X8D7 754 aa10.65□□□□□ -0.71
CUX1-221ENST00000622516 DNAL1Q4LDG9 190 aa10.65□□□□□ -0.71
CUX1-221ENST00000622516 AGAP9Q5VTM2 703 aa10.65□□□□□ -0.71
CUX1-221ENST00000622516 KIAA0408Q6ZU52 694 aa10.65□□□□□ -0.71
CUX1-221ENST00000622516 CARNMT1Q8N4J0 409 aa10.65□□□□□ -0.71
CUX1-221ENST00000622516 RDH11Q8TC12 318 aa10.65□□□□□ -0.71
CUX1-221ENST00000622516 TADA1Q96BN2 335 aa10.65□□□□□ -0.71
CUX1-221ENST00000622516 TMEM175Q9BSA9 504 aa10.65□□□□□ -0.71
CUX1-221ENST00000622516 TTLL2Q9BWV7 592 aa10.65□□□□□ -0.71
CUX1-221ENST00000622516 NMRK1Q9NWW6 199 aa10.65□□□□□ -0.71
CUX1-221ENST00000622516 MID2Q9UJV3 735 aa10.65□□□□□ -0.71
CUX1-221ENST00000622516 SORCS3Q9UPU3 1222 aa10.65□□□□□ -0.71
CUX1-221ENST00000622516 ATP11BQ9Y2G3 1177 aa10.65□□□□□ -0.71
CUX1-221ENST00000622516 SUPT7LO94864 414 aa10.64□□□□□ -0.71
CUX1-221ENST00000622516 C1RP00736 705 aa10.64□□□□□ -0.71
CUX1-221ENST00000622516 ATP5F1P24539 256 aaPredicted RBP10.64□□□□□ -0.71
CUX1-221ENST00000622516 PIK3R1P27986 724 aa10.64□□□□□ -0.71
CUX1-221ENST00000622516 NUDT2P50583 147 aa10.64□□□□□ -0.71
CUX1-221ENST00000622516 CLCN5P51795 746 aa10.64□□□□□ -0.71
CUX1-221ENST00000622516 C1QTNF8P60827 252 aa10.64□□□□□ -0.71
CUX1-221ENST00000622516 DEFB103AP81534 67 aa10.64□□□□□ -0.71
CUX1-221ENST00000622516 TIAL1Q01085 375 aaKnown RBP eCLIP10.64□□□□□ -0.71
CUX1-221ENST00000622516 ASPHQ12797 758 aa10.64□□□□□ -0.71
CUX1-221ENST00000622516 MUM1Q2TAK8 710 aa10.64□□□□□ -0.71
CUX1-221ENST00000622516 ISCA2Q86U28 154 aa10.64□□□□□ -0.71
CUX1-221ENST00000622516 OR4L1Q8NH43 312 aa10.64□□□□□ -0.71
CUX1-221ENST00000622516 CDKN2AIPNLQ96HQ2 116 aa10.64□□□□□ -0.71
CUX1-221ENST00000622516 UBXN10Q96LJ8 280 aa10.64□□□□□ -0.71
CUX1-221ENST00000622516 RANBP9Q96S59 729 aa10.64□□□□□ -0.71
CUX1-221ENST00000622516 PPM1HQ9ULR3 514 aa10.64□□□□□ -0.71
CUX1-221ENST00000622516 CDYLQ9Y232 598 aa10.64□□□□□ -0.71
CUX1-221ENST00000622516 K7ERQ8 282 aa10.64□□□□□ -0.71
CUX1-221ENST00000622516 UBFD1O14562 309 aaKnown RBP10.64□□□□□ -0.71
CUX1-221ENST00000622516 IPO13O94829 963 aaKnown RBP10.64□□□□□ -0.71
CUX1-221ENST00000622516 MBL2P11226 248 aaPredicted RBP10.64□□□□□ -0.71
CUX1-221ENST00000622516 GJA1P17302 382 aa10.64□□□□□ -0.71
CUX1-221ENST00000622516 CLNS1AP54105 237 aaKnown RBP10.64□□□□□ -0.71
CUX1-221ENST00000622516 CDH4P55283 916 aa10.64□□□□□ -0.71
CUX1-221ENST00000622516 TBL3Q12788 808 aaKnown RBP10.64□□□□□ -0.71
CUX1-221ENST00000622516 CYTH1Q15438 398 aa10.64□□□□□ -0.71
CUX1-221ENST00000622516 TSNAXIP1Q2TAA8 658 aa10.64□□□□□ -0.71
CUX1-221ENST00000622516 GLT6D1Q7Z4J2 308 aa10.64□□□□□ -0.71
CUX1-221ENST00000622516 DNAJB7Q7Z6W7 309 aaPredicted RBP10.64□□□□□ -0.71
CUX1-221ENST00000622516 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP10.64□□□□□ -0.716e-7■■■■■ 139.2
CUX1-221ENST00000622516 ARL14EPQ8N8R7 260 aaPredicted RBP10.64□□□□□ -0.71
CUX1-221ENST00000622516 BRSK1Q8TDC3 778 aa10.64□□□□□ -0.71
CUX1-221ENST00000622516 VWCEQ96DN2 955 aa10.64□□□□□ -0.71
CUX1-221ENST00000622516 NAF1Q96HR8 494 aaKnown RBP10.64□□□□□ -0.71
CUX1-221ENST00000622516 FEM1CQ96JP0 617 aa10.64□□□□□ -0.71
CUX1-221ENST00000622516 MAGEH1Q9H213 219 aa10.64□□□□□ -0.71
CUX1-221ENST00000622516 SCUBE2Q9NQ36 999 aa10.64□□□□□ -0.71
CUX1-221ENST00000622516 CATSPERZQ9NTU4 200 aa10.64□□□□□ -0.71
CUX1-221ENST00000622516 GALPQ9UBC7 116 aa10.64□□□□□ -0.71
CUX1-221ENST00000622516 FCF1Q9Y324 198 aaKnown RBP10.64□□□□□ -0.71
CUX1-221ENST00000622516 YIPF1Q9Y548 306 aa10.64□□□□□ -0.71
CUX1-221ENST00000622516 NCF1BA6NI72 391 aaPredicted RBP10.63□□□□□ -0.71
CUX1-221ENST00000622516 NCF1CA8MVU1 366 aaPredicted RBP10.63□□□□□ -0.71
CUX1-221ENST00000622516 H0Y626 953 aa10.63□□□□□ -0.71
CUX1-221ENST00000622516 H3BMM5 538 aa10.63□□□□□ -0.71
CUX1-221ENST00000622516 STX16-NPEPL1H3BU86 382 aa10.63□□□□□ -0.71
CUX1-221ENST00000622516 INSIG1O15503 277 aa10.63□□□□□ -0.71
CUX1-221ENST00000622516 OR1I1O60431 355 aa10.63□□□□□ -0.71
CUX1-221ENST00000622516 H2AFYO75367 372 aaKnown RBP10.63□□□□□ -0.71
CUX1-221ENST00000622516 PAPSS2O95340 614 aaPredicted RBP10.63□□□□□ -0.71
CUX1-221ENST00000622516 PRLP01236 227 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms