RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 HOXC6P09630 235 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 SBK3P0C264 359 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 CCND2P30279 289 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 GRK4P32298 578 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 RCVRNP35243 200 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 RFC2P35250 354 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 POLR2IP36954 125 aaKnown RBP10.85□□□□□ -0.67
UPF3A-212ENST00000619079 ARCN1P48444 511 aaKnown RBP10.85□□□□□ -0.67
UPF3A-212ENST00000619079 CSRP3P50461 194 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 GABARAPL2P60520 117 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 IRF5Q13568 498 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 CA9Q16790 459 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 SEZ6Q53EL9 994 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 RAB6CQ53S08 254 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 LDLRAP1Q5SW96 308 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 UGT3A1Q6NUS8 523 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 IFNLR1Q8IU57 520 aaPredicted RBP10.85□□□□□ -0.67
UPF3A-212ENST00000619079 ADGRG5Q8IZF4 528 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 CCNYL1Q8N7R7 359 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 HMGCLL1Q8TB92 370 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 MAGEE2Q8TD90 523 aaPredicted RBP10.85□□□□□ -0.67
UPF3A-212ENST00000619079 TMEM176AQ96HP8 235 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 FCRL3Q96P31 734 aaPredicted RBP10.85□□□□□ -0.67
UPF3A-212ENST00000619079 CSF3RQ99062 836 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 C1QTNF1Q9BXJ1 281 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 RAB6CQ9H0N0 254 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 HPS4Q9NQG7 708 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 PXMP2Q9NR77 195 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 GTSE1Q9NYZ3 720 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 DTLQ9NZJ0 730 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 GTF2IRD1Q9UHL9 959 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 SLC39A10Q9ULF5 831 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 PLXNB2O15031 1838 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 ISPDA4D126 451 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 TARM1B6A8C7 271 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 OGTO15294 1046 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 ASNA1O43681 348 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 DLX3O60479 287 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 TPST1O60507 370 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 UMPSP11172 480 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 TNFSF9P41273 254 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 YAP1P46937 504 aaKnown RBP10.85□□□□□ -0.67
UPF3A-212ENST00000619079 POLD2P49005 469 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 DNAJB13P59910 316 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 ADAM17P78536 824 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 IFRD2Q12894 506 aaPredicted RBP10.85□□□□□ -0.67
UPF3A-212ENST00000619079 SPCS2Q15005 226 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 PGS1Q32NB8 556 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 MFSD14CQ5VZR4 134 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 CES3Q6UWW8 571 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 ARMCX2Q7L311 632 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 VASH1Q7L8A9 365 aaPredicted RBP10.85□□□□□ -0.67
UPF3A-212ENST00000619079 CHST15Q7LFX5 561 aaPredicted RBP10.85□□□□□ -0.67
UPF3A-212ENST00000619079 BTLAQ7Z6A9 289 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 SLCO6A1Q86UG4 719 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 SPPL2CQ8IUH8 684 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 ARMC8Q8IUR7 673 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 LACC1Q8IV20 430 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 FSTL5Q8N475 847 aaPredicted RBP10.85□□□□□ -0.67
UPF3A-212ENST00000619079 SLAIN1Q8ND83 568 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 AFG1LQ8WV93 481 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 TMEM143Q96AN5 459 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 ZNF486Q96H40 463 aaPredicted RBP10.85□□□□□ -0.67
UPF3A-212ENST00000619079 AGAP2Q99490 1192 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 TINF2Q9BSI4 451 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 MCMBPQ9BTE3 642 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 FUNDC2Q9BWH2 189 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 HOXD1Q9GZZ0 328 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 MRPL46Q9H2W6 279 aaKnown RBP10.85□□□□□ -0.67
UPF3A-212ENST00000619079 FLRT1Q9NZU1 646 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 DNMT3BQ9UBC3 853 aaKnown RBP10.85□□□□□ -0.67
UPF3A-212ENST00000619079 ZNF639Q9UID6 485 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 ZNF229Q9UJW7 825 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 RUVBL2Q9Y230 463 aaKnown RBP10.85□□□□□ -0.67
UPF3A-212ENST00000619079 SLC27A5Q9Y2P5 690 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 NDUFAF1Q9Y375 327 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 HES2Q9Y543 173 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 DOCK3Q8IZD9 2030 aa10.84□□□□□ -0.67
UPF3A-212ENST00000619079 LDLRP01130 860 aa10.84□□□□□ -0.67
UPF3A-212ENST00000619079 GFAPP14136 432 aa10.84□□□□□ -0.67
UPF3A-212ENST00000619079 ARL2P36404 184 aa10.84□□□□□ -0.67
UPF3A-212ENST00000619079 EFNA5P52803 228 aa10.84□□□□□ -0.67
UPF3A-212ENST00000619079 SNX16P57768 344 aa10.84□□□□□ -0.67
UPF3A-212ENST00000619079 DNASE1L3Q13609 305 aa10.84□□□□□ -0.67
UPF3A-212ENST00000619079 PLCL1Q15111 1095 aa10.84□□□□□ -0.67
UPF3A-212ENST00000619079 SMAD1Q15797 465 aaKnown RBP10.84□□□□□ -0.67
UPF3A-212ENST00000619079 DGUOKQ16854 277 aa10.84□□□□□ -0.67
UPF3A-212ENST00000619079 INAVAQ3KP66 663 aa10.84□□□□□ -0.67
UPF3A-212ENST00000619079 ATAD3BQ5T9A4 648 aa10.84□□□□□ -0.67
UPF3A-212ENST00000619079 TTC23LQ6PF05 361 aa10.84□□□□□ -0.67
UPF3A-212ENST00000619079 LAYNQ6UX15 382 aa10.84□□□□□ -0.67
UPF3A-212ENST00000619079 KCNMB4Q86W47 210 aa10.84□□□□□ -0.67
UPF3A-212ENST00000619079 ELMOD1Q8N336 334 aa10.84□□□□□ -0.67
UPF3A-212ENST00000619079 MINDY1Q8N5J2 469 aa10.84□□□□□ -0.67
UPF3A-212ENST00000619079 BEST2Q8NFU1 509 aa10.84□□□□□ -0.67
UPF3A-212ENST00000619079 CAPSLQ8WWF8 208 aa10.84□□□□□ -0.67
UPF3A-212ENST00000619079 HDAC2Q92769 488 aaKnown RBP10.84□□□□□ -0.67
UPF3A-212ENST00000619079 FKBP10Q96AY3 582 aa10.84□□□□□ -0.67
UPF3A-212ENST00000619079 CSPG4P5Q96PW8 444 aa10.84□□□□□ -0.67
UPF3A-212ENST00000619079 MRPL4Q9BYD3 311 aaKnown RBP10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms