RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 KCNAB2Q13303 367 aa6.32□□□□□ -1.4
CUX1-220ENST00000607092 SQSTM1Q13501 440 aa6.32□□□□□ -1.4
CUX1-220ENST00000607092 LRP8Q14114 963 aa6.32□□□□□ -1.4
CUX1-220ENST00000607092 HLTFQ14527 1009 aaKnown RBP eCLIP6.32□□□□□ -1.4
CUX1-220ENST00000607092 NR1D2Q14995 579 aa6.32□□□□□ -1.4
CUX1-220ENST00000607092 TGIF1Q15583 401 aa6.32□□□□□ -1.4
CUX1-220ENST00000607092 CRTC2Q53ET0 693 aaPredicted RBP6.32□□□□□ -1.4
CUX1-220ENST00000607092 CT47A1Q5JQC4 288 aaPredicted RBP6.32□□□□□ -1.4
CUX1-220ENST00000607092 COLEC12Q5KU26 742 aa6.32□□□□□ -1.4
CUX1-220ENST00000607092 DCAF12Q5T6F0 453 aa6.32□□□□□ -1.4
CUX1-220ENST00000607092 SPECC1LQ69YQ0 1117 aa6.32□□□□□ -1.4
CUX1-220ENST00000607092 ZNF438Q7Z4V0 828 aa6.32□□□□□ -1.4
CUX1-220ENST00000607092 NDUFAF2Q8N183 169 aa6.32□□□□□ -1.4
CUX1-220ENST00000607092 BBS5Q8N3I7 341 aa6.32□□□□□ -1.4
CUX1-220ENST00000607092 LZTR1Q8N653 840 aa6.32□□□□□ -1.4
CUX1-220ENST00000607092 Q8N9G6 341 aaPredicted RBP6.32□□□□□ -1.4
CUX1-220ENST00000607092 OR4D9Q8NGE8 314 aa6.32□□□□□ -1.4
CUX1-220ENST00000607092 RXFP2Q8WXD0 754 aa6.32□□□□□ -1.4
CUX1-220ENST00000607092 CENPIQ92674 756 aaPredicted RBP6.32□□□□□ -1.4
CUX1-220ENST00000607092 SLC45A3Q96JT2 553 aa6.32□□□□□ -1.4
CUX1-220ENST00000607092 KCNK17Q96T54 332 aa6.32□□□□□ -1.4
CUX1-220ENST00000607092 TRIM4Q9C037 500 aa6.32□□□□□ -1.4
CUX1-220ENST00000607092 EPB41L1Q9H4G0 881 aa6.32□□□□□ -1.4
CUX1-220ENST00000607092 PCDH12Q9NPG4 1184 aa6.32□□□□□ -1.4
CUX1-220ENST00000607092 ANLNQ9NQW6 1124 aa6.32□□□□□ -1.4
CUX1-220ENST00000607092 HAUS2Q9NVX0 235 aa6.32□□□□□ -1.4
CUX1-220ENST00000607092 KIAA1468Q9P260 1216 aa6.32□□□□□ -1.4
CUX1-220ENST00000607092 UBA2Q9UBT2 640 aaPredicted RBP6.32□□□□□ -1.4
CUX1-220ENST00000607092 GGT7Q9UJ14 662 aa6.32□□□□□ -1.4
CUX1-220ENST00000607092 SNX10Q9Y5X0 201 aa6.32□□□□□ -1.4
CUX1-220ENST00000607092 ANKRD17O75179 2603 aaKnown RBP6.32□□□□□ -1.4
CUX1-220ENST00000607092 KIF26BQ2KJY2 2108 aa6.32□□□□□ -1.4
CUX1-220ENST00000607092 DOCK4Q8N1I0 1966 aa6.31□□□□□ -1.4
CUX1-220ENST00000607092 PRSS38A1L453 326 aa6.31□□□□□ -1.4
CUX1-220ENST00000607092 C2CD4BA6NLJ0 364 aa6.31□□□□□ -1.4
CUX1-220ENST00000607092 B4DGG1 531 aa6.31□□□□□ -1.4
CUX1-220ENST00000607092 C9orf172C9J069 976 aa6.31□□□□□ -1.4
CUX1-220ENST00000607092 RASA4BC9J798 803 aa6.31□□□□□ -1.4
CUX1-220ENST00000607092 PSMD11O00231 422 aa6.31□□□□□ -1.4
CUX1-220ENST00000607092 RNF103O00237 685 aa6.31□□□□□ -1.4
CUX1-220ENST00000607092 PES1O00541 588 aaKnown RBP6.31□□□□□ -1.4
CUX1-220ENST00000607092 RASA4O43374 803 aa6.31□□□□□ -1.4
CUX1-220ENST00000607092 SOCS5O75159 536 aa6.31□□□□□ -1.4
CUX1-220ENST00000607092 RECQL5O94762 991 aaPredicted RBP6.31□□□□□ -1.4
CUX1-220ENST00000607092 PRKCGP05129 697 aa6.31□□□□□ -1.4
CUX1-220ENST00000607092 PCCBP05166 539 aa6.31□□□□□ -1.4
CUX1-220ENST00000607092 CCDC172P0C7W6 258 aa6.31□□□□□ -1.4
CUX1-220ENST00000607092 MYCLP1P12525 358 aaPredicted RBP6.31□□□□□ -1.4
CUX1-220ENST00000607092 CCNB1P14635 433 aa6.31□□□□□ -1.4
CUX1-220ENST00000607092 SLC2A4P14672 509 aa6.31□□□□□ -1.4
CUX1-220ENST00000607092 UCHL3P15374 230 aa6.31□□□□□ -1.4
CUX1-220ENST00000607092 TFE3P19532 575 aaPredicted RBP6.31□□□□□ -1.4
CUX1-220ENST00000607092 ITIH1P19827 911 aa6.31□□□□□ -1.4
CUX1-220ENST00000607092 GPD1P21695 349 aa6.31□□□□□ -1.4
CUX1-220ENST00000607092 GKP32189 559 aa6.31□□□□□ -1.4
CUX1-220ENST00000607092 LIMK2P53671 638 aa6.31□□□□□ -1.4
CUX1-220ENST00000607092 POLE2P56282 527 aa6.31□□□□□ -1.4
CUX1-220ENST00000607092 GSCP56915 257 aaPredicted RBP6.31□□□□□ -1.4
CUX1-220ENST00000607092 AP1S1P61966 158 aa6.31□□□□□ -1.4
CUX1-220ENST00000607092 CDR2Q01850 454 aa6.31□□□□□ -1.4
CUX1-220ENST00000607092 NCAPHQ15003 741 aa6.31□□□□□ -1.4
CUX1-220ENST00000607092 CDO1Q16878 200 aa6.31□□□□□ -1.4
CUX1-220ENST00000607092 CCDC14Q49A88 953 aa6.31□□□□□ -1.4
CUX1-220ENST00000607092 VWA3BQ502W6 1294 aa6.31□□□□□ -1.4
CUX1-220ENST00000607092 RALGPS1Q5JS13 557 aa6.31□□□□□ -1.4
CUX1-220ENST00000607092 ATXN7L2Q5T6C5 722 aaPredicted RBP6.31□□□□□ -1.4
CUX1-220ENST00000607092 NAA35Q5VZE5 725 aa6.31□□□□□ -1.4
CUX1-220ENST00000607092 AFMIDQ63HM1 303 aa6.31□□□□□ -1.4
CUX1-220ENST00000607092 CYB5D1Q6P9G0 228 aa6.31□□□□□ -1.4
CUX1-220ENST00000607092 CEACAM20Q6UY09 585 aa6.31□□□□□ -1.4
CUX1-220ENST00000607092 DPPA4Q7L190 304 aa6.31□□□□□ -1.4
CUX1-220ENST00000607092 VASH2Q86V25 355 aa6.31□□□□□ -1.4
CUX1-220ENST00000607092 C17orf82Q86X59 251 aaPredicted RBP6.31□□□□□ -1.4
CUX1-220ENST00000607092 ZFAND4Q86XD8 727 aa6.31□□□□□ -1.4
CUX1-220ENST00000607092 CACNA2D3Q8IZS8 1091 aa6.31□□□□□ -1.4
CUX1-220ENST00000607092 FAM26EQ8N5C1 309 aa6.31□□□□□ -1.4
CUX1-220ENST00000607092 C9orf43Q8TAL5 461 aaPredicted RBP6.31□□□□□ -1.4
CUX1-220ENST00000607092 EPS8L1Q8TE68 723 aa6.31□□□□□ -1.4
CUX1-220ENST00000607092 ZDHHC1Q8WTX9 485 aa6.31□□□□□ -1.4
CUX1-220ENST00000607092 FAM172AQ8WUF8 416 aa6.31□□□□□ -1.4
CUX1-220ENST00000607092 APOBEC4Q8WW27 367 aaKnown RBP6.31□□□□□ -1.4
CUX1-220ENST00000607092 SEC14L1Q92503 715 aa6.31□□□□□ -1.4
CUX1-220ENST00000607092 NKD1Q969G9 470 aa6.31□□□□□ -1.4
CUX1-220ENST00000607092 SH3KBP1Q96B97 665 aa6.31□□□□□ -1.4
CUX1-220ENST00000607092 PDXPQ96GD0 296 aa6.31□□□□□ -1.4
CUX1-220ENST00000607092 TUBGCP2Q9BSJ2 902 aa6.31□□□□□ -1.4
CUX1-220ENST00000607092 CNPY3Q9BT09 278 aa6.31□□□□□ -1.4
CUX1-220ENST00000607092 FUCA2Q9BTY2 467 aa6.31□□□□□ -1.4
CUX1-220ENST00000607092 SELENOOQ9BVL4 669 aa6.31□□□□□ -1.4
CUX1-220ENST00000607092 CINPQ9BW66 212 aaPredicted RBP6.31□□□□□ -1.4
CUX1-220ENST00000607092 SLC12A9Q9BXP2 914 aa6.31□□□□□ -1.4
CUX1-220ENST00000607092 CYP4F12Q9HCS2 524 aa6.31□□□□□ -1.4
CUX1-220ENST00000607092 SIX2Q9NPC8 291 aa6.31□□□□□ -1.4
CUX1-220ENST00000607092 PLCB1Q9NQ66 1216 aa6.31□□□□□ -1.4
CUX1-220ENST00000607092 METTL5Q9NRN9 209 aaKnown RBP6.31□□□□□ -1.4
CUX1-220ENST00000607092 RABGEF1Q9UJ41 708 aa6.31□□□□□ -1.4
CUX1-220ENST00000607092 MOSPD1Q9UJG1 213 aa6.31□□□□□ -1.4
CUX1-220ENST00000607092 DNPEPQ9ULA0 475 aa6.31□□□□□ -1.4
CUX1-220ENST00000607092 OR1A2Q9Y585 309 aa6.31□□□□□ -1.4
CUX1-220ENST00000607092 PCDHB3Q9Y5E6 796 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms