RNA–Protein interactions for RNA: ENST00000602140.1

RPS28-204, Transcript of ribosomal protein S28, humanhuman

TSL 1 (best)

Gene RPS28, Length 912 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-204ENST00000602140 TNFRSF10CO14798 259 aa13.2□□□□□ -0.3
RPS28-204ENST00000602140 LRCH4O75427 683 aa13.2□□□□□ -0.3
RPS28-204ENST00000602140 HGFP14210 728 aa13.2□□□□□ -0.3
RPS28-204ENST00000602140 GLB1P16278 677 aa13.2□□□□□ -0.3
RPS28-204ENST00000602140 GM2AP17900 193 aa13.2□□□□□ -0.3
RPS28-204ENST00000602140 KELP23276 732 aa13.2□□□□□ -0.3
RPS28-204ENST00000602140 SLC5A2P31639 672 aa13.2□□□□□ -0.3
RPS28-204ENST00000602140 UGT1A5P35504 534 aa13.2□□□□□ -0.3
RPS28-204ENST00000602140 TRIM23P36406 574 aa13.2□□□□□ -0.3
RPS28-204ENST00000602140 ANP32AP39687 249 aaKnown RBP13.2□□□□□ -0.3
RPS28-204ENST00000602140 HCAR3P49019 387 aa13.2□□□□□ -0.3
RPS28-204ENST00000602140 RENBPP51606 427 aa13.2□□□□□ -0.3
RPS28-204ENST00000602140 AP1S1P61966 158 aa13.2□□□□□ -0.3
RPS28-204ENST00000602140 TYRO3Q06418 890 aa13.2□□□□□ -0.3
RPS28-204ENST00000602140 SLC10A7Q0GE19 358 aa13.2□□□□□ -0.3
RPS28-204ENST00000602140 EIF3IQ13347 325 aaKnown RBP13.2□□□□□ -0.3
RPS28-204ENST00000602140 DPYSQ14117 519 aa13.2□□□□□ -0.3
RPS28-204ENST00000602140 LY6DQ14210 128 aa13.2□□□□□ -0.3
RPS28-204ENST00000602140 LBRQ14739 615 aaKnown RBP13.2□□□□□ -0.3
RPS28-204ENST00000602140 ACOX1Q15067 660 aa13.2□□□□□ -0.3
RPS28-204ENST00000602140 KIF26BQ2KJY2 2108 aa13.2□□□□□ -0.3
RPS28-204ENST00000602140 CCDC183Q5T5S1 534 aa13.2□□□□□ -0.3
RPS28-204ENST00000602140 KIAA1614Q5VZ46 1190 aa13.2□□□□□ -0.3
RPS28-204ENST00000602140 OGFOD3Q6PK18 319 aa13.2□□□□□ -0.3
RPS28-204ENST00000602140 CCDC81Q6ZN84 652 aa13.2□□□□□ -0.3
RPS28-204ENST00000602140 ZNF571Q7Z3V5 609 aaPredicted RBP13.2□□□□□ -0.3
RPS28-204ENST00000602140 JAMLQ86YT9 394 aa13.2□□□□□ -0.3
RPS28-204ENST00000602140 CCNJLQ8IV13 435 aa13.2□□□□□ -0.3
RPS28-204ENST00000602140 PSTKQ8IV42 348 aaKnown RBP13.2□□□□□ -0.3
RPS28-204ENST00000602140 SFTPA2Q8IWL1 248 aa13.2□□□□□ -0.3
RPS28-204ENST00000602140 PELI3Q8N2H9 469 aa13.2□□□□□ -0.3
RPS28-204ENST00000602140 TTC9Q92623 222 aa13.2□□□□□ -0.3
RPS28-204ENST00000602140 ZNF653Q96CK0 615 aa13.2□□□□□ -0.3
RPS28-204ENST00000602140 TMEM74Q96NL1 305 aa13.2□□□□□ -0.3
RPS28-204ENST00000602140 PSKH2Q96QS6 385 aa13.2□□□□□ -0.3
RPS28-204ENST00000602140 LGR4Q9BXB1 951 aa13.2□□□□□ -0.3
RPS28-204ENST00000602140 TMEM168Q9H0V1 697 aa13.2□□□□□ -0.3
RPS28-204ENST00000602140 WDR26Q9H7D7 661 aa13.2□□□□□ -0.3
RPS28-204ENST00000602140 CYP4F12Q9HCS2 524 aa13.2□□□□□ -0.3
RPS28-204ENST00000602140 RTN4Q9NQC3 1192 aaKnown RBP13.2□□□□□ -0.3
RPS28-204ENST00000602140 CNOT8Q9UFF9 292 aaKnown RBP13.2□□□□□ -0.3
RPS28-204ENST00000602140 SEPT3Q9UH03 358 aa13.2□□□□□ -0.3
RPS28-204ENST00000602140 ATXN7L1Q9ULK2 861 aaPredicted RBP13.2□□□□□ -0.3
RPS28-204ENST00000602140 B4DGG1 531 aa13.19□□□□□ -0.3
RPS28-204ENST00000602140 GOLGA6L22H0YM25 854 aa13.19□□□□□ -0.3
RPS28-204ENST00000602140 AGRPO00253 132 aa13.19□□□□□ -0.3
RPS28-204ENST00000602140 DDX3XO00571 662 aaKnown RBP eCLIP13.19□□□□□ -0.39e-49■■□□□ 14.1
RPS28-204ENST00000602140 NOBOXO60393 691 aa13.19□□□□□ -0.3
RPS28-204ENST00000602140 HOXC4P09017 264 aaPredicted RBP13.19□□□□□ -0.3
RPS28-204ENST00000602140 JMJD7P0C870 316 aa13.19□□□□□ -0.3
RPS28-204ENST00000602140 GZMAP12544 262 aa13.19□□□□□ -0.3
RPS28-204ENST00000602140 CCKBRP32239 447 aa13.19□□□□□ -0.3
RPS28-204ENST00000602140 ZNF135P52742 658 aaPredicted RBP13.19□□□□□ -0.3
RPS28-204ENST00000602140 C14orf28Q4W4Y0 310 aa13.19□□□□□ -0.3
RPS28-204ENST00000602140 CERCAMQ5T4B2 595 aa13.19□□□□□ -0.3
RPS28-204ENST00000602140 TMCO4Q5TGY1 634 aa13.19□□□□□ -0.3
RPS28-204ENST00000602140 E4F1Q66K89 784 aaPredicted RBP13.19□□□□□ -0.3
RPS28-204ENST00000602140 PNCKQ6P2M8 343 aa13.19□□□□□ -0.3
RPS28-204ENST00000602140 LZTR1Q8N653 840 aa13.19□□□□□ -0.3
RPS28-204ENST00000602140 CCL4L1Q8NHW4 92 aa13.19□□□□□ -0.3
RPS28-204ENST00000602140 PDCD6IPQ8WUM4 868 aaKnown RBP13.19□□□□□ -0.3
RPS28-204ENST00000602140 ZNF599Q96NL3 588 aa13.19□□□□□ -0.3
RPS28-204ENST00000602140 CCNL2Q96S94 520 aaPredicted RBP13.19□□□□□ -0.3
RPS28-204ENST00000602140 SEMA4CQ9C0C4 833 aa13.19□□□□□ -0.3
RPS28-204ENST00000602140 DPEP2Q9H4A9 486 aa13.19□□□□□ -0.3
RPS28-204ENST00000602140 ZWILCHQ9H900 591 aa13.19□□□□□ -0.3
RPS28-204ENST00000602140 AIPL1Q9NZN9 384 aa13.19□□□□□ -0.3
RPS28-204ENST00000602140 LRIT1Q9P2V4 623 aa13.19□□□□□ -0.3
RPS28-204ENST00000602140 MYO1AQ9UBC5 1043 aa13.19□□□□□ -0.3
RPS28-204ENST00000602140 B4GALT6Q9UBX8 382 aa13.19□□□□□ -0.3
RPS28-204ENST00000602140 PISDQ9UG56 409 aa13.19□□□□□ -0.3
RPS28-204ENST00000602140 APPL1Q9UKG1 709 aa13.19□□□□□ -0.3
RPS28-204ENST00000602140 PCDHGC4Q9Y5F7 938 aa13.19□□□□□ -0.3
RPS28-204ENST00000602140 PCDHGA7Q9Y5G6 932 aa13.19□□□□□ -0.3
RPS28-204ENST00000602140 RNF215Q9Y6U7 377 aa13.19□□□□□ -0.3
RPS28-204ENST00000602140 ZNF462Q96JM2 2506 aa13.19□□□□□ -0.3
RPS28-204ENST00000602140 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP13.18□□□□□ -0.3
RPS28-204ENST00000602140 PRSS38A1L453 326 aa13.18□□□□□ -0.3
RPS28-204ENST00000602140 H3BRJ5 948 aa13.18□□□□□ -0.3
RPS28-204ENST00000602140 PDE2AO00408 941 aaPredicted RBP13.18□□□□□ -0.3
RPS28-204ENST00000602140 AMPD1P23109 780 aa13.18□□□□□ -0.3
RPS28-204ENST00000602140 IL1R2P27930 398 aa13.18□□□□□ -0.3
RPS28-204ENST00000602140 KLHL30Q0D2K2 578 aa13.18□□□□□ -0.3
RPS28-204ENST00000602140 ARHGEF7Q14155 803 aa13.18□□□□□ -0.3
RPS28-204ENST00000602140 HLTFQ14527 1009 aaKnown RBP eCLIP13.18□□□□□ -0.3
RPS28-204ENST00000602140 ZNF235Q14590 738 aa13.18□□□□□ -0.3
RPS28-204ENST00000602140 CNGA3Q16281 694 aa13.18□□□□□ -0.3
RPS28-204ENST00000602140 SMTNL2Q2TAL5 461 aa13.18□□□□□ -0.3
RPS28-204ENST00000602140 ANO6Q4KMQ2 910 aa13.18□□□□□ -0.3
RPS28-204ENST00000602140 FILIP1LQ4L180 1135 aa13.18□□□□□ -0.3
RPS28-204ENST00000602140 DENND2CQ68D51 928 aa13.18□□□□□ -0.3
RPS28-204ENST00000602140 SPECC1LQ69YQ0 1117 aa13.18□□□□□ -0.3
RPS28-204ENST00000602140 SPRED1Q7Z699 444 aa13.18□□□□□ -0.3
RPS28-204ENST00000602140 NUS1Q96E22 293 aa13.18□□□□□ -0.3
RPS28-204ENST00000602140 COQ10AQ96MF6 247 aa13.18□□□□□ -0.3
RPS28-204ENST00000602140 NAT10Q9H0A0 1025 aaKnown RBP13.18□□□□□ -0.3
RPS28-204ENST00000602140 SUDS3Q9H7L9 328 aaPredicted RBP13.18□□□□□ -0.3
RPS28-204ENST00000602140 ETNK2Q9NVF9 386 aa13.18□□□□□ -0.3
RPS28-204ENST00000602140 LOXL2Q9Y4K0 774 aa13.18□□□□□ -0.3
RPS28-204ENST00000602140 SCINQ9Y6U3 715 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms