RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 ITGAVP06756 1048 aa16.9■□□□□ 0.3
TRIM28-215ENST00000601150 CTPS1P17812 591 aa16.9■□□□□ 0.3
TRIM28-215ENST00000601150 EPHA8P29322 1005 aaPredicted RBP16.9■□□□□ 0.3
TRIM28-215ENST00000601150 GRK6P43250 576 aa16.9■□□□□ 0.3
TRIM28-215ENST00000601150 ATP5OP48047 213 aa16.9■□□□□ 0.3
TRIM28-215ENST00000601150 THOP1P52888 689 aa16.9■□□□□ 0.3
TRIM28-215ENST00000601150 YPEL5P62699 121 aa16.9■□□□□ 0.3
TRIM28-215ENST00000601150 OTUD4Q01804 1114 aaKnown RBP16.9■□□□□ 0.3
TRIM28-215ENST00000601150 WASHC5Q12768 1159 aa16.9■□□□□ 0.3
TRIM28-215ENST00000601150 ZNF211Q13398 564 aaPredicted RBP16.9■□□□□ 0.3
TRIM28-215ENST00000601150 PDE1CQ14123 709 aaPredicted RBP16.9■□□□□ 0.3
TRIM28-215ENST00000601150 ARHGEF7Q14155 803 aa16.9■□□□□ 0.3
TRIM28-215ENST00000601150 ACOX1Q15067 660 aa16.9■□□□□ 0.3
TRIM28-215ENST00000601150 CNGA3Q16281 694 aa16.9■□□□□ 0.3
TRIM28-215ENST00000601150 GATAD2AQ86YP4 633 aa16.9■□□□□ 0.3
TRIM28-215ENST00000601150 ACTL9Q8TC94 416 aa16.9■□□□□ 0.3
TRIM28-215ENST00000601150 RHBDD1Q8TEB9 315 aa16.9■□□□□ 0.3
TRIM28-215ENST00000601150 SAP25Q8TEE9 199 aa16.9■□□□□ 0.3
TRIM28-215ENST00000601150 HTR3CQ8WXA8 447 aa16.9■□□□□ 0.3
TRIM28-215ENST00000601150 TEKT5Q96M29 485 aa16.9■□□□□ 0.3
TRIM28-215ENST00000601150 VAT1Q99536 393 aa16.9■□□□□ 0.3
TRIM28-215ENST00000601150 GLOD4Q9HC38 313 aa16.9■□□□□ 0.3
TRIM28-215ENST00000601150 LZTFL1Q9NQ48 299 aa16.9■□□□□ 0.3
TRIM28-215ENST00000601150 PCOLCE2Q9UKZ9 415 aa16.9■□□□□ 0.3
TRIM28-215ENST00000601150 COL5A1P20908 1838 aaPredicted RBP16.89■□□□□ 0.29
TRIM28-215ENST00000601150 A0A0J9YYE9 177 aa16.89■□□□□ 0.29
TRIM28-215ENST00000601150 SPTY2D1-AS1A0A0U1RR47 76 aa16.89■□□□□ 0.29
TRIM28-215ENST00000601150 PSMD11O00231 422 aa16.89■□□□□ 0.29
TRIM28-215ENST00000601150 CBFA2T3O75081 653 aa16.89■□□□□ 0.29
TRIM28-215ENST00000601150 PRLP01236 227 aa16.89■□□□□ 0.29
TRIM28-215ENST00000601150 TRBC1P01850 177 aa16.89■□□□□ 0.29
TRIM28-215ENST00000601150 ALPIP09923 528 aa16.89■□□□□ 0.29
TRIM28-215ENST00000601150 LHCGRP22888 699 aa16.89■□□□□ 0.29
TRIM28-215ENST00000601150 HNF1BP35680 557 aa16.89■□□□□ 0.29
TRIM28-215ENST00000601150 FOXK2Q01167 660 aa16.89■□□□□ 0.29
TRIM28-215ENST00000601150 PTK2BQ14289 1009 aa16.89■□□□□ 0.29
TRIM28-215ENST00000601150 FZD2Q14332 565 aa16.89■□□□□ 0.29
TRIM28-215ENST00000601150 SLC14A2Q15849 920 aa16.89■□□□□ 0.29
TRIM28-215ENST00000601150 FAM182AQ5T1J6 154 aa16.89■□□□□ 0.29
TRIM28-215ENST00000601150 KDM7AQ6ZMT4 941 aa16.89■□□□□ 0.29
TRIM28-215ENST00000601150 LPCAT1Q8NF37 534 aa16.89■□□□□ 0.29
TRIM28-215ENST00000601150 ANP32BQ92688 251 aaKnown RBP16.89■□□□□ 0.29
TRIM28-215ENST00000601150 COQ10AQ96MF6 247 aa16.89■□□□□ 0.29
TRIM28-215ENST00000601150 ALS2CR12Q96Q35 445 aa16.89■□□□□ 0.29
TRIM28-215ENST00000601150 RBM15Q96T37 977 aaKnown RBP eCLIP16.89■□□□□ 0.292e-13■■□□□ 11.8
TRIM28-215ENST00000601150 FERMT1Q9BQL6 677 aa16.89■□□□□ 0.29
TRIM28-215ENST00000601150 ADGRE3Q9BY15 652 aa16.89■□□□□ 0.29
TRIM28-215ENST00000601150 KCTD5Q9NXV2 234 aa16.89■□□□□ 0.29
TRIM28-215ENST00000601150 KLHL8Q9P2G9 620 aaPredicted RBP16.89■□□□□ 0.29
TRIM28-215ENST00000601150 DNPEPQ9ULA0 475 aa16.89■□□□□ 0.29
TRIM28-215ENST00000601150 BTBD3Q9Y2F9 522 aa16.89■□□□□ 0.29
TRIM28-215ENST00000601150 PPP2R2CQ9Y2T4 447 aa16.89■□□□□ 0.29
TRIM28-215ENST00000601150 MED19A0JLT2 244 aaPredicted RBP16.88■□□□□ 0.29
TRIM28-215ENST00000601150 GOLGA6L9A6NEM1 432 aa16.88■□□□□ 0.29
TRIM28-215ENST00000601150 CAPN8A6NHC0 703 aa16.88■□□□□ 0.29
TRIM28-215ENST00000601150 PCCBP05166 539 aa16.88■□□□□ 0.29
TRIM28-215ENST00000601150 GM2AP17900 193 aa16.88■□□□□ 0.29
TRIM28-215ENST00000601150 EIF3EP60228 445 aaKnown RBP16.88■□□□□ 0.29
TRIM28-215ENST00000601150 BNIP3Q12983 259 aa16.88■□□□□ 0.29
TRIM28-215ENST00000601150 MTM1Q13496 603 aa16.88■□□□□ 0.29
TRIM28-215ENST00000601150 INPP5AQ14642 412 aa16.88■□□□□ 0.29
TRIM28-215ENST00000601150 PTPRRQ15256 657 aa16.88■□□□□ 0.29
TRIM28-215ENST00000601150 TRIP6Q15654 476 aaKnown RBP16.88■□□□□ 0.29
TRIM28-215ENST00000601150 N4BP2L1Q5TBK1 243 aaPredicted RBP16.88■□□□□ 0.29
TRIM28-215ENST00000601150 DENND2CQ68D51 928 aa16.88■□□□□ 0.29
TRIM28-215ENST00000601150 TSPAN33Q86UF1 283 aa16.88■□□□□ 0.29
TRIM28-215ENST00000601150 PARGQ86W56 976 aa16.88■□□□□ 0.29
TRIM28-215ENST00000601150 CDKL3Q8IVW4 592 aaPredicted RBP16.88■□□□□ 0.29
TRIM28-215ENST00000601150 CBARPQ8N350 705 aaPredicted RBP16.88■□□□□ 0.29
TRIM28-215ENST00000601150 TTC13Q8NBP0 860 aa16.88■□□□□ 0.29
TRIM28-215ENST00000601150 TADA1Q96BN2 335 aa16.88■□□□□ 0.29
TRIM28-215ENST00000601150 CDC6Q99741 560 aa16.88■□□□□ 0.29
TRIM28-215ENST00000601150 DNAJC28Q9NX36 388 aa16.88■□□□□ 0.29
TRIM28-215ENST00000601150 TRHDEQ9UKU6 1024 aa16.88■□□□□ 0.29
TRIM28-215ENST00000601150 LRP4O75096 1905 aa16.88■□□□□ 0.29
TRIM28-215ENST00000601150 SPAARA0A1B0GVQ0 90 aa16.87■□□□□ 0.29
TRIM28-215ENST00000601150 GOLGA8CPA6NN73 597 aa16.87■□□□□ 0.29
TRIM28-215ENST00000601150 RBP3P10745 1247 aa16.87■□□□□ 0.29
TRIM28-215ENST00000601150 ZNF30P17039 623 aa16.87■□□□□ 0.29
TRIM28-215ENST00000601150 NFKB1P19838 968 aa16.87■□□□□ 0.29
TRIM28-215ENST00000601150 RBL1P28749 1068 aa16.87■□□□□ 0.29
TRIM28-215ENST00000601150 SIM1P81133 766 aaPredicted RBP16.87■□□□□ 0.29
TRIM28-215ENST00000601150 QPCTQ16769 361 aa16.87■□□□□ 0.29
TRIM28-215ENST00000601150 TPRG1LQ5T0D9 272 aa16.87■□□□□ 0.29
TRIM28-215ENST00000601150 CRTC1Q6UUV9 634 aa16.87■□□□□ 0.29
TRIM28-215ENST00000601150 MACC1Q6ZN28 852 aa16.87■□□□□ 0.29
TRIM28-215ENST00000601150 PID1Q7Z2X4 250 aa16.87■□□□□ 0.29
TRIM28-215ENST00000601150 KANSL1Q7Z3B3 1105 aa16.87■□□□□ 0.29
TRIM28-215ENST00000601150 HSD11B1LQ7Z5J1 315 aa16.87■□□□□ 0.29
TRIM28-215ENST00000601150 GLRX5Q86SX6 157 aa16.87■□□□□ 0.29
TRIM28-215ENST00000601150 ZNF567Q8N184 647 aa16.87■□□□□ 0.29
TRIM28-215ENST00000601150 SPATA22Q8NHS9 363 aa16.87■□□□□ 0.29
TRIM28-215ENST00000601150 BAHD1Q8TBE0 780 aaPredicted RBP16.87■□□□□ 0.29
TRIM28-215ENST00000601150 NUS1Q96E22 293 aa16.87■□□□□ 0.29
TRIM28-215ENST00000601150 SMIM14Q96QK8 99 aa16.87■□□□□ 0.29
TRIM28-215ENST00000601150 LYSMD1Q96S90 227 aa16.87■□□□□ 0.29
TRIM28-215ENST00000601150 APOOQ9BUR5 198 aa16.87■□□□□ 0.29
TRIM28-215ENST00000601150 MLPHQ9BV36 600 aaPredicted RBP16.87■□□□□ 0.29
TRIM28-215ENST00000601150 DNAH14Q0VDD8 3507 aa16.87■□□□□ 0.29
TRIM28-215ENST00000601150 ANKRD66B4E2M5 251 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms