RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 HNRNPA2B1P22626 353 aaKnown RBP19.39■□□□□ 0.69
UPF1-209ENST00000600310 RACK1P63244 317 aaKnown RBP19.39■□□□□ 0.69
UPF1-209ENST00000600310 ARHGEF7Q14155 803 aa19.39■□□□□ 0.69
UPF1-209ENST00000600310 AGERQ15109 404 aa19.39■□□□□ 0.69
UPF1-209ENST00000600310 SLC1A5Q15758 541 aa19.39■□□□□ 0.69
UPF1-209ENST00000600310 CDKN3Q16667 212 aa19.39■□□□□ 0.69
UPF1-209ENST00000600310 DUOXA1Q1HG43 343 aa19.39■□□□□ 0.69
UPF1-209ENST00000600310 FAXCQ5TGI0 409 aa19.39■□□□□ 0.69
UPF1-209ENST00000600310 NAPEPLDQ6IQ20 393 aa19.39■□□□□ 0.69
UPF1-209ENST00000600310 CRTC1Q6UUV9 634 aa19.39■□□□□ 0.69
UPF1-209ENST00000600310 RANBP10Q6VN20 620 aa19.39■□□□□ 0.69
UPF1-209ENST00000600310 RABEPKQ7Z6M1 372 aa19.39■□□□□ 0.69
UPF1-209ENST00000600310 TSPAN33Q86UF1 283 aa19.39■□□□□ 0.69
UPF1-209ENST00000600310 ZCCHC9Q8N567 271 aaKnown RBP19.39■□□□□ 0.69
UPF1-209ENST00000600310 TMEM145Q8NBT3 493 aa19.39■□□□□ 0.69
UPF1-209ENST00000600310 CEP76Q8TAP6 659 aa19.39■□□□□ 0.69
UPF1-209ENST00000600310 SERAC1Q96JX3 654 aa19.39■□□□□ 0.69
UPF1-209ENST00000600310 SLC6A18Q96N87 628 aa19.39■□□□□ 0.69
UPF1-209ENST00000600310 LENG8Q96PV6 779 aaPredicted RBP19.39■□□□□ 0.69
UPF1-209ENST00000600310 SRPK1Q96SB4 655 aaKnown RBP19.39■□□□□ 0.69
UPF1-209ENST00000600310 FICDQ9BVA6 458 aa19.39■□□□□ 0.69
UPF1-209ENST00000600310 ETNK1Q9HBU6 452 aa19.39■□□□□ 0.69
UPF1-209ENST00000600310 MAGEE1Q9HCI5 957 aa19.39■□□□□ 0.69
UPF1-209ENST00000600310 TM9SF3Q9HD45 589 aa19.39■□□□□ 0.69
UPF1-209ENST00000600310 PRR5-ARHGAP8B1AHC4 643 aa19.38■□□□□ 0.69
UPF1-209ENST00000600310 LZTS3O60299 673 aaPredicted RBP19.38■□□□□ 0.69
UPF1-209ENST00000600310 LRP3O75074 770 aa19.38■□□□□ 0.69
UPF1-209ENST00000600310 AGTP01019 485 aa19.38■□□□□ 0.69
UPF1-209ENST00000600310 ZNF30P17039 623 aa19.38■□□□□ 0.69
UPF1-209ENST00000600310 AKT2P31751 481 aa19.38■□□□□ 0.69
UPF1-209ENST00000600310 CHRNA4P43681 627 aa19.38■□□□□ 0.69
UPF1-209ENST00000600310 SIRPB2Q5JXA9 342 aa19.38■□□□□ 0.69
UPF1-209ENST00000600310 LRRC66Q68CR7 880 aa19.38■□□□□ 0.69
UPF1-209ENST00000600310 TAB3Q8N5C8 712 aaPredicted RBP19.38■□□□□ 0.69
UPF1-209ENST00000600310 SLC25A41Q8N5S1 370 aa19.38■□□□□ 0.69
UPF1-209ENST00000600310 DENND6BQ8NEG7 585 aa19.38■□□□□ 0.69
UPF1-209ENST00000600310 GRK7Q8WTQ7 553 aa19.38■□□□□ 0.69
UPF1-209ENST00000600310 LRRC45Q96CN5 670 aa19.38■□□□□ 0.69
UPF1-209ENST00000600310 KLF6Q99612 283 aaPredicted RBP19.38■□□□□ 0.69
UPF1-209ENST00000600310 C1QTNF7Q9BXJ2 289 aa19.38■□□□□ 0.69
UPF1-209ENST00000600310 RAB6BQ9NRW1 208 aa19.38■□□□□ 0.69
UPF1-209ENST00000600310 COQ6Q9Y2Z9 468 aa19.38■□□□□ 0.69
UPF1-209ENST00000600310 NEU2Q9Y3R4 380 aa19.38■□□□□ 0.69
UPF1-209ENST00000600310 CEP192Q8TEP8 1941 aa19.37■□□□□ 0.69
UPF1-209ENST00000600310 ERI2A8K979 691 aaKnown RBP19.37■□□□□ 0.69
UPF1-209ENST00000600310 CCDC188H7C350 402 aa19.37■□□□□ 0.69
UPF1-209ENST00000600310 WNT9AO14904 365 aa19.37■□□□□ 0.69
UPF1-209ENST00000600310 RAD51BO15315 384 aa19.37■□□□□ 0.69
UPF1-209ENST00000600310 RECQL5O94762 991 aaPredicted RBP19.37■□□□□ 0.69
UPF1-209ENST00000600310 AP2A1O95782 977 aa19.37■□□□□ 0.69
UPF1-209ENST00000600310 FGF1P05230 155 aa19.37■□□□□ 0.69
UPF1-209ENST00000600310 ZNF806P0C7X5 589 aa19.37■□□□□ 0.69
UPF1-209ENST00000600310 GM2AP17900 193 aa19.37■□□□□ 0.69
UPF1-209ENST00000600310 SEMA5AQ13591 1074 aa19.37■□□□□ 0.69
UPF1-209ENST00000600310 CCDC6Q16204 474 aa19.37■□□□□ 0.69
UPF1-209ENST00000600310 SLC23A3Q6PIS1 610 aa19.37■□□□□ 0.69
UPF1-209ENST00000600310 HSD11B1LQ7Z5J1 315 aa19.37■□□□□ 0.69
UPF1-209ENST00000600310 PDCD7Q8N8D1 485 aaKnown RBP19.37■□□□□ 0.69
UPF1-209ENST00000600310 CENPTQ96BT3 561 aa19.37■□□□□ 0.69
UPF1-209ENST00000600310 COQ10AQ96MF6 247 aa19.37■□□□□ 0.69
UPF1-209ENST00000600310 DDX47Q9H0S4 455 aaKnown RBP19.37■□□□□ 0.69
UPF1-209ENST00000600310 LRRC40Q9H9A6 602 aa19.37■□□□□ 0.69
UPF1-209ENST00000600310 ARNT2Q9HBZ2 717 aa19.37■□□□□ 0.69
UPF1-209ENST00000600310 FZD3Q9NPG1 666 aa19.37■□□□□ 0.69
UPF1-209ENST00000600310 HS3ST3A1Q9Y663 406 aa19.37■□□□□ 0.69
UPF1-209ENST00000600310 GON4LQ3T8J9 2241 aa19.37■□□□□ 0.69
UPF1-209ENST00000600310 TNRC6BQ9UPQ9 1833 aaKnown RBP19.37■□□□□ 0.69
UPF1-209ENST00000600310 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP19.36■□□□□ 0.69
UPF1-209ENST00000600310 A0A0U1RQS6 177 aa19.36■□□□□ 0.69
UPF1-209ENST00000600310 A0A1W2PR77 199 aa19.36■□□□□ 0.69
UPF1-209ENST00000600310 KRT14P02533 472 aa19.36■□□□□ 0.69
UPF1-209ENST00000600310 TGM1P22735 817 aa19.36■□□□□ 0.69
UPF1-209ENST00000600310 AFF3P51826 1226 aaKnown RBP19.36■□□□□ 0.69
UPF1-209ENST00000600310 STC1P52823 247 aa19.36■□□□□ 0.69
UPF1-209ENST00000600310 PTSQ03393 145 aa19.36■□□□□ 0.69
UPF1-209ENST00000600310 SPEM2Q0P670 501 aa19.36■□□□□ 0.69
UPF1-209ENST00000600310 OLIG2Q13516 323 aa19.36■□□□□ 0.69
UPF1-209ENST00000600310 SPARCL1Q14515 664 aa19.36■□□□□ 0.69
UPF1-209ENST00000600310 STAT4Q14765 748 aa19.36■□□□□ 0.69
UPF1-209ENST00000600310 ACOX1Q15067 660 aa19.36■□□□□ 0.69
UPF1-209ENST00000600310 RAVER1Q8IY67 606 aaKnown RBP19.36■□□□□ 0.69
UPF1-209ENST00000600310 DCLK2Q8N568 766 aa19.36■□□□□ 0.69
UPF1-209ENST00000600310 MFSD2AQ8NA29 543 aa19.36■□□□□ 0.69
UPF1-209ENST00000600310 TP53I13Q8NBR0 393 aaPredicted RBP19.36■□□□□ 0.69
UPF1-209ENST00000600310 ZNF592Q92610 1267 aa19.36■□□□□ 0.69
UPF1-209ENST00000600310 SLCO2A1Q92959 643 aa19.36■□□□□ 0.69
UPF1-209ENST00000600310 MYOCQ99972 504 aa19.36■□□□□ 0.69
UPF1-209ENST00000600310 TBL1YQ9BQ87 522 aa19.36■□□□□ 0.69
UPF1-209ENST00000600310 APOL2Q9BQE5 337 aa19.36■□□□□ 0.69
UPF1-209ENST00000600310 CAPN10Q9HC96 672 aa19.36■□□□□ 0.69
UPF1-209ENST00000600310 AASDHPPTQ9NRN7 309 aa19.36■□□□□ 0.69
UPF1-209ENST00000600310 SEMA4GQ9NTN9 838 aa19.36■□□□□ 0.69
UPF1-209ENST00000600310 KCTD5Q9NXV2 234 aa19.36■□□□□ 0.69
UPF1-209ENST00000600310 PCYOX1Q9UHG3 505 aa19.36■□□□□ 0.69
UPF1-209ENST00000600310 CDC23Q9UJX2 597 aa19.36■□□□□ 0.69
UPF1-209ENST00000600310 SLC6A14Q9UN76 642 aa19.36■□□□□ 0.69
UPF1-209ENST00000600310 DMDP11532 3685 aa19.36■□□□□ 0.69
UPF1-209ENST00000600310 TRPM6Q9BX84 2022 aa19.35■□□□□ 0.69
UPF1-209ENST00000600310 VPS13AQ96RL7 3174 aa19.35■□□□□ 0.69
UPF1-209ENST00000600310 C1orf232A0A0U1RR37 186 aa19.35■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms