RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 CDH19Q9H159 772 aa6.14□□□□□ -1.43
VRK3-220ENST00000600259 GANQ9H2C0 597 aa6.14□□□□□ -1.43
VRK3-220ENST00000600259 PDCL3Q9H2J4 239 aa6.14□□□□□ -1.43
VRK3-220ENST00000600259 ADNPQ9H2P0 1102 aa6.14□□□□□ -1.43
VRK3-220ENST00000600259 RDH14Q9HBH5 336 aa6.14□□□□□ -1.43
VRK3-220ENST00000600259 SEPT10Q9P0V9 454 aa6.14□□□□□ -1.43
VRK3-220ENST00000600259 PDP2Q9P2J9 529 aa6.14□□□□□ -1.43
VRK3-220ENST00000600259 ATP8A1Q9Y2Q0 1164 aa6.14□□□□□ -1.43
VRK3-220ENST00000600259 LRRK1Q38SD2 2015 aa6.13□□□□□ -1.43
VRK3-220ENST00000600259 IGHV5-10-1A0A0J9YXX1 117 aa6.13□□□□□ -1.43
VRK3-220ENST00000600259 SIGLEC16A6NMB1 481 aa6.13□□□□□ -1.43
VRK3-220ENST00000600259 F8VZ95 297 aa6.13□□□□□ -1.43
VRK3-220ENST00000600259 TRAFD1O14545 582 aaPredicted RBP6.13□□□□□ -1.43
VRK3-220ENST00000600259 HGSO14964 777 aaPredicted RBP6.13□□□□□ -1.43
VRK3-220ENST00000600259 PPM1DO15297 605 aa6.13□□□□□ -1.43
VRK3-220ENST00000600259 PRAMEF11O60813 436 aa6.13□□□□□ -1.43
VRK3-220ENST00000600259 PPFIA2O75334 1257 aa6.13□□□□□ -1.43
VRK3-220ENST00000600259 CPNE6O95741 557 aa6.13□□□□□ -1.43
VRK3-220ENST00000600259 PCCBP05166 539 aa6.13□□□□□ -1.43
VRK3-220ENST00000600259 CEACAM5P06731 702 aa6.13□□□□□ -1.43
VRK3-220ENST00000600259 CCNB1P14635 433 aa6.13□□□□□ -1.43
VRK3-220ENST00000600259 CR2P20023 1033 aa6.13□□□□□ -1.43
VRK3-220ENST00000600259 EPHB2P29323 1055 aa6.13□□□□□ -1.43
VRK3-220ENST00000600259 UGT1A3P35503 534 aa6.13□□□□□ -1.43
VRK3-220ENST00000600259 STAT1P42224 750 aa6.13□□□□□ -1.43
VRK3-220ENST00000600259 LIMK2P53671 638 aa6.13□□□□□ -1.43
VRK3-220ENST00000600259 MAZP56270 477 aaKnown RBP6.13□□□□□ -1.43
VRK3-220ENST00000600259 GSCP56915 257 aaPredicted RBP6.13□□□□□ -1.43
VRK3-220ENST00000600259 CDR2Q01850 454 aa6.13□□□□□ -1.43
VRK3-220ENST00000600259 NSUN2Q08J23 767 aaKnown RBP eCLIP6.13□□□□□ -1.43
VRK3-220ENST00000600259 RAPGEF1Q13905 1077 aa6.13□□□□□ -1.43
VRK3-220ENST00000600259 ARHGEF7Q14155 803 aa6.13□□□□□ -1.43
VRK3-220ENST00000600259 CLPPQ16740 277 aaPredicted RBP6.13□□□□□ -1.43
VRK3-220ENST00000600259 SKIDA1Q1XH10 827 aa6.13□□□□□ -1.43
VRK3-220ENST00000600259 PARP15Q460N3 678 aa6.13□□□□□ -1.43
VRK3-220ENST00000600259 PPP1R15BQ5SWA1 713 aa6.13□□□□□ -1.43
VRK3-220ENST00000600259 PNCKQ6P2M8 343 aa6.13□□□□□ -1.43
VRK3-220ENST00000600259 BRAT1Q6PJG6 821 aa6.13□□□□□ -1.43
VRK3-220ENST00000600259 SLFN11Q7Z7L1 901 aa6.13□□□□□ -1.43
VRK3-220ENST00000600259 SRLQ86TD4 932 aa6.13□□□□□ -1.43
VRK3-220ENST00000600259 PIM3Q86V86 326 aa6.13□□□□□ -1.43
VRK3-220ENST00000600259 ZNF677Q86XU0 584 aa6.13□□□□□ -1.43
VRK3-220ENST00000600259 DNAAF5Q86Y56 855 aa6.13□□□□□ -1.43
VRK3-220ENST00000600259 PTRH1Q86Y79 214 aaKnown RBP6.13□□□□□ -1.43
VRK3-220ENST00000600259 ARHGAP12Q8IWW6 846 aa6.13□□□□□ -1.43
VRK3-220ENST00000600259 NAGSQ8N159 534 aa6.13□□□□□ -1.43
VRK3-220ENST00000600259 BMPERQ8N8U9 685 aa6.13□□□□□ -1.43
VRK3-220ENST00000600259 MLKLQ8NB16 471 aa6.13□□□□□ -1.43
VRK3-220ENST00000600259 TSEN2Q8NCE0 465 aaKnown RBP6.13□□□□□ -1.43
VRK3-220ENST00000600259 RCBTB1Q8NDN9 531 aa6.13□□□□□ -1.43
VRK3-220ENST00000600259 ATL2Q8NHH9 583 aa6.13□□□□□ -1.43
VRK3-220ENST00000600259 PATE1Q8WXA2 126 aa6.13□□□□□ -1.43
VRK3-220ENST00000600259 JPH3Q8WXH2 748 aaPredicted RBP6.13□□□□□ -1.43
VRK3-220ENST00000600259 SCARF2Q96GP6 870 aaPredicted RBP6.13□□□□□ -1.43
VRK3-220ENST00000600259 COQ10AQ96MF6 247 aa6.13□□□□□ -1.43
VRK3-220ENST00000600259 TAAR9Q96RI9 348 aa6.13□□□□□ -1.43
VRK3-220ENST00000600259 TUBGCP5Q96RT8 1024 aa6.13□□□□□ -1.43
VRK3-220ENST00000600259 TUBGCP2Q9BSJ2 902 aa6.13□□□□□ -1.43
VRK3-220ENST00000600259 TEX101Q9BY14 249 aa6.13□□□□□ -1.43
VRK3-220ENST00000600259 FRMD8Q9BZ67 464 aaPredicted RBP6.13□□□□□ -1.43
VRK3-220ENST00000600259 SLC39A8Q9C0K1 460 aa6.13□□□□□ -1.43
VRK3-220ENST00000600259 EPN3Q9H201 632 aa6.13□□□□□ -1.43
VRK3-220ENST00000600259 DPEP2Q9H4A9 486 aa6.13□□□□□ -1.43
VRK3-220ENST00000600259 CYP4F12Q9HCS2 524 aa6.13□□□□□ -1.43
VRK3-220ENST00000600259 WDR70Q9NW82 654 aa6.13□□□□□ -1.43
VRK3-220ENST00000600259 UBA2Q9UBT2 640 aaPredicted RBP6.13□□□□□ -1.43
VRK3-220ENST00000600259 TUBD1Q9UJT1 453 aa6.13□□□□□ -1.43
VRK3-220ENST00000600259 FZD10Q9ULW2 581 aa6.13□□□□□ -1.43
VRK3-220ENST00000600259 B3GALT1Q9Y5Z6 326 aa6.13□□□□□ -1.43
VRK3-220ENST00000600259 ARHGEF17Q96PE2 2063 aaPredicted RBP6.13□□□□□ -1.43
VRK3-220ENST00000600259 SDK2Q58EX2 2172 aa6.13□□□□□ -1.43
VRK3-220ENST00000600259 IGHV1OR21-1A0A087WYE8 117 aa6.12□□□□□ -1.43
VRK3-220ENST00000600259 PRSS38A1L453 326 aa6.12□□□□□ -1.43
VRK3-220ENST00000600259 B4DGG1 531 aa6.12□□□□□ -1.43
VRK3-220ENST00000600259 STMND1H3BQB6 276 aa6.12□□□□□ -1.43
VRK3-220ENST00000600259 CACNB4O00305 520 aaPredicted RBP6.12□□□□□ -1.43
VRK3-220ENST00000600259 EPHB6O15197 1021 aa6.12□□□□□ -1.43
VRK3-220ENST00000600259 NKX2-8O15522 239 aa6.12□□□□□ -1.43
VRK3-220ENST00000600259 CCP110O43303 1012 aa6.12□□□□□ -1.43
VRK3-220ENST00000600259 HTRA2O43464 458 aaPredicted RBP6.12□□□□□ -1.43
VRK3-220ENST00000600259 LRP4O75096 1905 aa6.12□□□□□ -1.43
VRK3-220ENST00000600259 ECEL1O95672 775 aa6.12□□□□□ -1.43
VRK3-220ENST00000600259 KRT3P12035 628 aa6.12□□□□□ -1.43
VRK3-220ENST00000600259 GP1BBP13224 206 aa6.12□□□□□ -1.43
VRK3-220ENST00000600259 LIFP15018 202 aa6.12□□□□□ -1.43
VRK3-220ENST00000600259 XPAP23025 273 aaPredicted RBP6.12□□□□□ -1.43
VRK3-220ENST00000600259 AK4P27144 223 aaPredicted RBP6.12□□□□□ -1.43
VRK3-220ENST00000600259 ALDH4A1P30038 563 aa6.12□□□□□ -1.43
VRK3-220ENST00000600259 CSF2RBP32927 897 aa6.12□□□□□ -1.43
VRK3-220ENST00000600259 CASRP41180 1078 aa6.12□□□□□ -1.43
VRK3-220ENST00000600259 GPR3P46089 330 aa6.12□□□□□ -1.43
VRK3-220ENST00000600259 ZNF143P52747 638 aaPredicted RBP6.12□□□□□ -1.43
VRK3-220ENST00000600259 POLE2P56282 527 aa6.12□□□□□ -1.43
VRK3-220ENST00000600259 JAM2P57087 298 aa6.12□□□□□ -1.43
VRK3-220ENST00000600259 RPL7AP62424 266 aaKnown RBP6.12□□□□□ -1.43
VRK3-220ENST00000600259 OGDHQ02218 1023 aa6.12□□□□□ -1.43
VRK3-220ENST00000600259 KCNAB2Q13303 367 aa6.12□□□□□ -1.43
VRK3-220ENST00000600259 GRM3Q14832 879 aa6.12□□□□□ -1.43
VRK3-220ENST00000600259 CAMK4Q16566 473 aa6.12□□□□□ -1.43
VRK3-220ENST00000600259 AMZ1Q400G9 498 aa6.12□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms