RNA–Protein interactions for RNA: ENST00000600137.5

VRK3-219, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 822 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-219ENST00000600137 MPP3Q13368 585 aa13.78□□□□□ -0.2
VRK3-219ENST00000600137 GALNT3Q14435 633 aa13.78□□□□□ -0.2
VRK3-219ENST00000600137 SF3A2Q15428 464 aaKnown RBP13.78□□□□□ -0.2
VRK3-219ENST00000600137 PCSK7Q16549 785 aa13.78□□□□□ -0.2
VRK3-219ENST00000600137 DUOXA1Q1HG43 343 aa13.78□□□□□ -0.2
VRK3-219ENST00000600137 CFAP58Q5T655 872 aa13.78□□□□□ -0.2
VRK3-219ENST00000600137 ITPRIPL1Q6GPH6 555 aa13.78□□□□□ -0.2
VRK3-219ENST00000600137 NAPEPLDQ6IQ20 393 aa13.78□□□□□ -0.2
VRK3-219ENST00000600137 ERAP2Q6P179 960 aa13.78□□□□□ -0.2
VRK3-219ENST00000600137 KDM7AQ6ZMT4 941 aa13.78□□□□□ -0.2
VRK3-219ENST00000600137 GCNT7Q6ZNI0 430 aa13.78□□□□□ -0.2
VRK3-219ENST00000600137 HSD11B1LQ7Z5J1 315 aa13.78□□□□□ -0.2
VRK3-219ENST00000600137 TECPR1Q7Z6L1 1165 aa13.78□□□□□ -0.2
VRK3-219ENST00000600137 ZSCAN30Q86W11 494 aa13.78□□□□□ -0.2
VRK3-219ENST00000600137 PELI3Q8N2H9 469 aa13.78□□□□□ -0.2
VRK3-219ENST00000600137 TP53I13Q8NBR0 393 aaPredicted RBP13.78□□□□□ -0.2
VRK3-219ENST00000600137 LPCAT1Q8NF37 534 aa13.78□□□□□ -0.2
VRK3-219ENST00000600137 SNX19Q92543 992 aa13.78□□□□□ -0.2
VRK3-219ENST00000600137 FUBP1Q96AE4 644 aaKnown RBP13.78□□□□□ -0.2
VRK3-219ENST00000600137 MIR1-1HGQ9H1L0 117 aa13.78□□□□□ -0.2
VRK3-219ENST00000600137 FZD3Q9NPG1 666 aa13.78□□□□□ -0.2
VRK3-219ENST00000600137 FSCN3Q9NQT6 498 aa13.78□□□□□ -0.2
VRK3-219ENST00000600137 MBNL1Q9NR56 388 aaKnown RBP13.78□□□□□ -0.2
VRK3-219ENST00000600137 HOMER3Q9NSC5 361 aa13.78□□□□□ -0.2
VRK3-219ENST00000600137 NCDNQ9UBB6 729 aa13.78□□□□□ -0.2
VRK3-219ENST00000600137 SPO11Q9Y5K1 396 aa13.78□□□□□ -0.2
VRK3-219ENST00000600137 HS3ST3A1Q9Y663 406 aa13.78□□□□□ -0.2
VRK3-219ENST00000600137 CABIN1Q9Y6J0 2220 aa13.78□□□□□ -0.2
VRK3-219ENST00000600137 CFAP54Q96N23 3096 aa13.77□□□□□ -0.2
VRK3-219ENST00000600137 POM121BA6NF01 834 aa13.77□□□□□ -0.21
VRK3-219ENST00000600137 PRAMEF26H0Y7S4 382 aa13.77□□□□□ -0.21
VRK3-219ENST00000600137 H0Y8X5 98 aa13.77□□□□□ -0.21
VRK3-219ENST00000600137 ANXA9O76027 345 aa13.77□□□□□ -0.21
VRK3-219ENST00000600137 TM7SF2O76062 418 aa13.77□□□□□ -0.21
VRK3-219ENST00000600137 RECQL5O94762 991 aaPredicted RBP13.77□□□□□ -0.21
VRK3-219ENST00000600137 STK10O94804 968 aaKnown RBP13.77□□□□□ -0.21
VRK3-219ENST00000600137 CLDN7O95471 211 aa13.77□□□□□ -0.21
VRK3-219ENST00000600137 C1SP09871 688 aa13.77□□□□□ -0.21
VRK3-219ENST00000600137 HNRNPA2B1P22626 353 aaKnown RBP13.77□□□□□ -0.21
VRK3-219ENST00000600137 DPP6P42658 865 aa13.77□□□□□ -0.21
VRK3-219ENST00000600137 GRIA4P48058 902 aa13.77□□□□□ -0.21
VRK3-219ENST00000600137 GEMP55040 296 aa13.77□□□□□ -0.21
VRK3-219ENST00000600137 CLDN2P57739 230 aa13.77□□□□□ -0.21
VRK3-219ENST00000600137 SLC1A5Q15758 541 aa13.77□□□□□ -0.21
VRK3-219ENST00000600137 WSCD2Q2TBF2 565 aa13.77□□□□□ -0.21
VRK3-219ENST00000600137 SETMARQ53H47 684 aaPredicted RBP13.77□□□□□ -0.21
VRK3-219ENST00000600137 SIRPB2Q5JXA9 342 aa13.77□□□□□ -0.21
VRK3-219ENST00000600137 FAXCQ5TGI0 409 aa13.77□□□□□ -0.21
VRK3-219ENST00000600137 LAYNQ6UX15 382 aa13.77□□□□□ -0.21
VRK3-219ENST00000600137 ABI3BPQ7Z7G0 1075 aa13.77□□□□□ -0.21
VRK3-219ENST00000600137 ATL2Q8NHH9 583 aa13.77□□□□□ -0.21
VRK3-219ENST00000600137 CEP76Q8TAP6 659 aa13.77□□□□□ -0.21
VRK3-219ENST00000600137 CXorf40AQ8TE69 158 aa13.77□□□□□ -0.21
VRK3-219ENST00000600137 MAGOHBQ96A72 148 aaKnown RBP13.77□□□□□ -0.21
VRK3-219ENST00000600137 FAM122AQ96E09 287 aa13.77□□□□□ -0.21
VRK3-219ENST00000600137 SERAC1Q96JX3 654 aa13.77□□□□□ -0.21
VRK3-219ENST00000600137 FERMT1Q9BQL6 677 aa13.77□□□□□ -0.21
VRK3-219ENST00000600137 ETNK1Q9HBU6 452 aa13.77□□□□□ -0.21
VRK3-219ENST00000600137 ARNT2Q9HBZ2 717 aa13.77□□□□□ -0.21
VRK3-219ENST00000600137 GPR27Q9NS67 375 aa13.77□□□□□ -0.21
VRK3-219ENST00000600137 SLC6A14Q9UN76 642 aa13.77□□□□□ -0.21
VRK3-219ENST00000600137 A0A1B0GVT2 93 aa13.76□□□□□ -0.21
VRK3-219ENST00000600137 PSMD11O00231 422 aa13.76□□□□□ -0.21
VRK3-219ENST00000600137 AURKAO14965 403 aa13.76□□□□□ -0.21
VRK3-219ENST00000600137 VILLO15195 856 aa13.76□□□□□ -0.21
VRK3-219ENST00000600137 IFNB1P01574 187 aa13.76□□□□□ -0.21
VRK3-219ENST00000600137 PIRTP0C851 137 aa13.76□□□□□ -0.21
VRK3-219ENST00000600137 CYP2A6P11509 494 aaPredicted RBP13.76□□□□□ -0.21
VRK3-219ENST00000600137 CA4P22748 312 aa13.76□□□□□ -0.21
VRK3-219ENST00000600137 CD38P28907 300 aa13.76□□□□□ -0.21
VRK3-219ENST00000600137 IGFALSP35858 605 aa13.76□□□□□ -0.21
VRK3-219ENST00000600137 STC1P52823 247 aa13.76□□□□□ -0.21
VRK3-219ENST00000600137 SPARCL1Q14515 664 aa13.76□□□□□ -0.21
VRK3-219ENST00000600137 TRIM61Q5EBN2 209 aa13.76□□□□□ -0.21
VRK3-219ENST00000600137 LRRC66Q68CR7 880 aa13.76□□□□□ -0.21
VRK3-219ENST00000600137 ARHGEF18Q6ZSZ5 1173 aa13.76□□□□□ -0.21
VRK3-219ENST00000600137 Q6ZVL8 140 aa13.76□□□□□ -0.21
VRK3-219ENST00000600137 USP45Q70EL2 814 aa13.76□□□□□ -0.21
VRK3-219ENST00000600137 TMC3Q7Z5M5 1100 aa13.76□□□□□ -0.21
VRK3-219ENST00000600137 ALYREFQ86V81 257 aaKnown RBP13.76□□□□□ -0.21
VRK3-219ENST00000600137 SPATS2Q86XZ4 545 aaKnown RBP13.76□□□□□ -0.21
VRK3-219ENST00000600137 MFSD2AQ8NA29 543 aa13.76□□□□□ -0.21
VRK3-219ENST00000600137 DENND6BQ8NEG7 585 aa13.76□□□□□ -0.21
VRK3-219ENST00000600137 IPMKQ8NFU5 416 aa13.76□□□□□ -0.21
VRK3-219ENST00000600137 RMDN1Q96DB5 314 aa13.76□□□□□ -0.21
VRK3-219ENST00000600137 CAPZA3Q96KX2 299 aa13.76□□□□□ -0.21
VRK3-219ENST00000600137 NAP1L3Q99457 506 aaPredicted RBP13.76□□□□□ -0.21
VRK3-219ENST00000600137 MYOCQ99972 504 aa13.76□□□□□ -0.21
VRK3-219ENST00000600137 ADGRE3Q9BY15 652 aa13.76□□□□□ -0.21
VRK3-219ENST00000600137 MAGEE1Q9HCI5 957 aa13.76□□□□□ -0.21
VRK3-219ENST00000600137 SUSD2Q9UGT4 822 aa13.76□□□□□ -0.21
VRK3-219ENST00000600137 AAR2Q9Y312 384 aaKnown RBP13.76□□□□□ -0.21
VRK3-219ENST00000600137 CEP250Q9BV73 2442 aa13.76□□□□□ -0.21
VRK3-219ENST00000600137 TP53BP1Q12888 1972 aaPredicted RBP13.76□□□□□ -0.21
VRK3-219ENST00000600137 TMEM131Q92545 1883 aa13.76□□□□□ -0.21
VRK3-219ENST00000600137 SCN8AQ9UQD0 1980 aa13.75□□□□□ -0.21
VRK3-219ENST00000600137 LNP1A1A4G5 178 aa13.75□□□□□ -0.21
VRK3-219ENST00000600137 PRR5-ARHGAP8B1AHC4 643 aa13.75□□□□□ -0.21
VRK3-219ENST00000600137 CDX4O14627 284 aaPredicted RBP13.75□□□□□ -0.21
VRK3-219ENST00000600137 PHF2O75151 1096 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms