RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 CCNFP41002 786 aa20.51■□□□□ 0.87
UPF1-207ENST00000599848 CRY2Q49AN0 593 aa20.51■□□□□ 0.87
UPF1-207ENST00000599848 FBXO42Q6P3S6 717 aa20.51■□□□□ 0.87
UPF1-207ENST00000599848 KIAA0408Q6ZU52 694 aa20.51■□□□□ 0.87
UPF1-207ENST00000599848 NEK7Q8TDX7 302 aa20.51■□□□□ 0.87
UPF1-207ENST00000599848 FAXDC2Q96IV6 333 aa20.51■□□□□ 0.87
UPF1-207ENST00000599848 SH3GL2Q99962 352 aa20.51■□□□□ 0.87
UPF1-207ENST00000599848 FAM83DQ9H4H8 585 aa20.51■□□□□ 0.87
UPF1-207ENST00000599848 DCLRE1BQ9H816 532 aa20.51■□□□□ 0.87
UPF1-207ENST00000599848 CLN6Q9NWW5 311 aa20.51■□□□□ 0.87
UPF1-207ENST00000599848 HGFP14210 728 aa20.5■□□□□ 0.87
UPF1-207ENST00000599848 ERCC2P18074 760 aa20.5■□□□□ 0.87
UPF1-207ENST00000599848 TACR2P21452 398 aa20.5■□□□□ 0.87
UPF1-207ENST00000599848 RAB10P61026 200 aa20.5■□□□□ 0.87
UPF1-207ENST00000599848 ST3GAL1Q11201 340 aa20.5■□□□□ 0.87
UPF1-207ENST00000599848 ZACNQ401N2 412 aa20.5■□□□□ 0.87
UPF1-207ENST00000599848 RTL4Q6ZR62 310 aa20.5■□□□□ 0.87
UPF1-207ENST00000599848 UBE2R2Q712K3 238 aaPredicted RBP20.5■□□□□ 0.87
UPF1-207ENST00000599848 ZSWIM2Q8NEG5 633 aa20.5■□□□□ 0.87
UPF1-207ENST00000599848 OR52K1Q8NGK4 314 aa20.5■□□□□ 0.87
UPF1-207ENST00000599848 RORBQ92753 470 aa20.5■□□□□ 0.87
UPF1-207ENST00000599848 TOP3BO95985 862 aaKnown RBP20.5■□□□□ 0.87
UPF1-207ENST00000599848 DUSP3P51452 185 aaPredicted RBP20.5■□□□□ 0.87
UPF1-207ENST00000599848 PDGFRLQ15198 375 aa20.5■□□□□ 0.87
UPF1-207ENST00000599848 TRIM16LQ309B1 348 aa20.5■□□□□ 0.87
UPF1-207ENST00000599848 MOB2Q70IA6 237 aa20.5■□□□□ 0.87
UPF1-207ENST00000599848 BEND5Q7L4P6 421 aa20.5■□□□□ 0.87
UPF1-207ENST00000599848 KIAA1143Q96AT1 154 aaPredicted RBP20.5■□□□□ 0.87
UPF1-207ENST00000599848 SEPHS2Q99611 448 aa20.5■□□□□ 0.87
UPF1-207ENST00000599848 CDADC1Q9BWV3 514 aa20.5■□□□□ 0.87
UPF1-207ENST00000599848 CLDND1Q9NY35 253 aa20.5■□□□□ 0.87
UPF1-207ENST00000599848 NAALADL1Q9UQQ1 740 aa20.5■□□□□ 0.87
UPF1-207ENST00000599848 LYVE1Q9Y5Y7 322 aa20.5■□□□□ 0.87
UPF1-207ENST00000599848 SMIM28A0A1B0GU29 152 aa20.5■□□□□ 0.87
UPF1-207ENST00000599848 TRAFD1O14545 582 aaPredicted RBP20.5■□□□□ 0.87
UPF1-207ENST00000599848 ELL3Q9HB65 397 aaPredicted RBP20.5■□□□□ 0.87
UPF1-207ENST00000599848 PAGE1O75459 146 aa20.5■□□□□ 0.87
UPF1-207ENST00000599848 IPO13O94829 963 aaKnown RBP20.5■□□□□ 0.87
UPF1-207ENST00000599848 CYP1A2P05177 515 aa20.5■□□□□ 0.87
UPF1-207ENST00000599848 MTHFRP42898 656 aa20.5■□□□□ 0.87
UPF1-207ENST00000599848 POU5F1Q01860 360 aaKnown RBP20.5■□□□□ 0.87
UPF1-207ENST00000599848 VITQ6UXI7 678 aa20.5■□□□□ 0.87
UPF1-207ENST00000599848 APTXQ7Z2E3 356 aaKnown RBP20.5■□□□□ 0.87
UPF1-207ENST00000599848 PSMB9P28065 219 aa20.49■□□□□ 0.87
UPF1-207ENST00000599848 CASP7P55210 303 aa20.49■□□□□ 0.87
UPF1-207ENST00000599848 CACNG1Q06432 222 aa20.49■□□□□ 0.87
UPF1-207ENST00000599848 MAMLD1Q13495 774 aa20.49■□□□□ 0.87
UPF1-207ENST00000599848 LARS2Q15031 903 aaKnown RBP20.49■□□□□ 0.87
UPF1-207ENST00000599848 LCN9Q8WX39 176 aa20.49■□□□□ 0.87
UPF1-207ENST00000599848 RNF145Q96MT1 663 aa20.49■□□□□ 0.87
UPF1-207ENST00000599848 FSHRP23945 695 aa20.49■□□□□ 0.87
UPF1-207ENST00000599848 MYBPC1Q00872 1141 aa20.49■□□□□ 0.87
UPF1-207ENST00000599848 SLC4A5Q9BY07 1137 aa20.49■□□□□ 0.87
UPF1-207ENST00000599848 DPEP2Q9H4A9 486 aa20.49■□□□□ 0.87
UPF1-207ENST00000599848 ZCCHC17Q9NP64 241 aaKnown RBP20.49■□□□□ 0.87
UPF1-207ENST00000599848 PNPLA8Q9NP80 782 aa20.49■□□□□ 0.87
UPF1-207ENST00000599848 ARHGAP20Q9P2F6 1191 aa20.49■□□□□ 0.87
UPF1-207ENST00000599848 SRRDQ9UH36 339 aa20.49■□□□□ 0.87
UPF1-207ENST00000599848 ERVK-11Q9UQG0 969 aa20.49■□□□□ 0.87
UPF1-207ENST00000599848 PEX12O00623 359 aa20.49■□□□□ 0.87
UPF1-207ENST00000599848 NBNO60934 754 aa20.49■□□□□ 0.87
UPF1-207ENST00000599848 DHPSP49366 369 aaPredicted RBP20.49■□□□□ 0.87
UPF1-207ENST00000599848 ZC3H7AQ8IWR0 971 aaKnown RBP20.49■□□□□ 0.87
UPF1-207ENST00000599848 TEX47Q8TBZ9 253 aa20.49■□□□□ 0.87
UPF1-207ENST00000599848 PRDM12Q9H4Q4 367 aa20.49■□□□□ 0.87
UPF1-207ENST00000599848 ZNF304Q9HCX3 659 aa20.49■□□□□ 0.87
UPF1-207ENST00000599848 SLC2A4RGQ9NR83 387 aa20.49■□□□□ 0.87
UPF1-207ENST00000599848 TMPRSS4Q9NRS4 437 aa20.49■□□□□ 0.87
UPF1-207ENST00000599848 CORO1CQ9ULV4 474 aaPredicted RBP20.49■□□□□ 0.87
UPF1-207ENST00000599848 XKRYO14609 159 aa20.49■□□□□ 0.87
UPF1-207ENST00000599848 NDST3O95803 873 aa20.49■□□□□ 0.87
UPF1-207ENST00000599848 HNRNPCP07910 306 aaKnown RBP eCLIP20.49■□□□□ 0.87
UPF1-207ENST00000599848 ATCAYQ86WG3 371 aa20.49■□□□□ 0.87
UPF1-207ENST00000599848 AZIN2Q96A70 460 aa20.49■□□□□ 0.87
UPF1-207ENST00000599848 FAM192AQ9GZU8 254 aa20.49■□□□□ 0.87
UPF1-207ENST00000599848 DMGDHQ9UI17 866 aaKnown RBP20.49■□□□□ 0.87
UPF1-207ENST00000599848 A0A1W2PQH9 124 aa20.48■□□□□ 0.87
UPF1-207ENST00000599848 USP2O75604 605 aaPredicted RBP20.48■□□□□ 0.87
UPF1-207ENST00000599848 UGT2B4P06133 528 aa20.48■□□□□ 0.87
UPF1-207ENST00000599848 IZUMO1Q8IYV9 350 aa20.48■□□□□ 0.87
UPF1-207ENST00000599848 ETNPPLQ8TBG4 499 aa20.48■□□□□ 0.87
UPF1-207ENST00000599848 ARVCFO00192 962 aa20.48■□□□□ 0.87
UPF1-207ENST00000599848 TFEBP19484 476 aa20.48■□□□□ 0.87
UPF1-207ENST00000599848 TARSP26639 723 aaKnown RBP20.48■□□□□ 0.87
UPF1-207ENST00000599848 DGKEP52429 567 aa20.48■□□□□ 0.87
UPF1-207ENST00000599848 DNAJC14Q6Y2X3 702 aaPredicted RBP20.48■□□□□ 0.87
UPF1-207ENST00000599848 BBS12Q6ZW61 710 aa20.48■□□□□ 0.87
UPF1-207ENST00000599848 DEFB107AQ8IZN7 70 aa20.48■□□□□ 0.87
UPF1-207ENST00000599848 EPS8L1Q8TE68 723 aa20.48■□□□□ 0.87
UPF1-207ENST00000599848 CAVIN3Q969G5 261 aa20.48■□□□□ 0.87
UPF1-207ENST00000599848 KAZALD1Q96I82 304 aa20.48■□□□□ 0.87
UPF1-207ENST00000599848 FAM86C2PA6NEL3 165 aa20.48■□□□□ 0.87
UPF1-207ENST00000599848 MEIS2O14770 477 aa20.48■□□□□ 0.87
UPF1-207ENST00000599848 RIPK2O43353 540 aa20.48■□□□□ 0.87
UPF1-207ENST00000599848 RPP40O75818 363 aaKnown RBP20.48■□□□□ 0.87
UPF1-207ENST00000599848 PIGNO95427 931 aa20.48■□□□□ 0.87
UPF1-207ENST00000599848 ABHD15Q6UXT9 468 aa20.48■□□□□ 0.87
UPF1-207ENST00000599848 TRPV3Q8NET8 790 aa20.48■□□□□ 0.87
UPF1-207ENST00000599848 MAT2BQ9NZL9 334 aa20.48■□□□□ 0.87
UPF1-207ENST00000599848 TMEM150BA6NC51 233 aa20.48■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms