RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 TTC13Q8NBP0 860 aa11.13□□□□□ -0.63
LIG1-211ENST00000596457 OR13H1Q8NG92 308 aa11.13□□□□□ -0.63
LIG1-211ENST00000596457 PIH1D2Q8WWB5 315 aa11.13□□□□□ -0.63
LIG1-211ENST00000596457 IFT43Q96FT9 208 aa11.13□□□□□ -0.63
LIG1-211ENST00000596457 TEKT5Q96M29 485 aa11.13□□□□□ -0.63
LIG1-211ENST00000596457 C1QTNF7Q9BXJ2 289 aa11.13□□□□□ -0.63
LIG1-211ENST00000596457 TDRD1Q9BXT4 1180 aaKnown RBP11.13□□□□□ -0.63
LIG1-211ENST00000596457 ZDHHC5Q9C0B5 715 aa11.13□□□□□ -0.63
LIG1-211ENST00000596457 SLC25A51Q9H1U9 297 aa11.13□□□□□ -0.63
LIG1-211ENST00000596457 GDF3Q9NR23 364 aa11.13□□□□□ -0.63
LIG1-211ENST00000596457 MBNL1Q9NR56 388 aaKnown RBP11.13□□□□□ -0.63
LIG1-211ENST00000596457 RSPH14Q9UHP6 348 aa11.13□□□□□ -0.63
LIG1-211ENST00000596457 R3HDM2Q9Y2K5 976 aaKnown RBP11.13□□□□□ -0.63
LIG1-211ENST00000596457 HS3ST3A1Q9Y663 406 aa11.13□□□□□ -0.63
LIG1-211ENST00000596457 GOLGA6CA6NDK9 693 aa11.12□□□□□ -0.63
LIG1-211ENST00000596457 GOLGA6BA6NDN3 693 aa11.12□□□□□ -0.63
LIG1-211ENST00000596457 POM121BA6NF01 834 aa11.12□□□□□ -0.63
LIG1-211ENST00000596457 NPIPB15A6NHN6 443 aaPredicted RBP11.12□□□□□ -0.63
LIG1-211ENST00000596457 A6NNZ2 444 aa11.12□□□□□ -0.63
LIG1-211ENST00000596457 CEP104O60308 925 aa11.12□□□□□ -0.63
LIG1-211ENST00000596457 FZD6O60353 706 aa11.12□□□□□ -0.63
LIG1-211ENST00000596457 MAGEC1O60732 1142 aa11.12□□□□□ -0.63
LIG1-211ENST00000596457 STK10O94804 968 aaKnown RBP11.12□□□□□ -0.63
LIG1-211ENST00000596457 ZIC2O95409 532 aaPredicted RBP11.12□□□□□ -0.63
LIG1-211ENST00000596457 GOLGA6DP0CG33 693 aa11.12□□□□□ -0.63
LIG1-211ENST00000596457 CSRP1P21291 193 aaKnown RBP11.12□□□□□ -0.63
LIG1-211ENST00000596457 CD68P34810 354 aaPredicted RBP11.12□□□□□ -0.63
LIG1-211ENST00000596457 CTSKP43235 329 aa11.12□□□□□ -0.63
LIG1-211ENST00000596457 NXPH1P58417 271 aa11.12□□□□□ -0.63
LIG1-211ENST00000596457 CCDC173Q0VFZ6 552 aa11.12□□□□□ -0.63
LIG1-211ENST00000596457 RALGDSQ12967 914 aa11.12□□□□□ -0.63
LIG1-211ENST00000596457 SNX1Q13596 522 aa11.12□□□□□ -0.63
LIG1-211ENST00000596457 LRRC14Q15048 493 aa11.12□□□□□ -0.63
LIG1-211ENST00000596457 IRF4Q15306 451 aa11.12□□□□□ -0.63
LIG1-211ENST00000596457 CCDC70Q6NSX1 233 aa11.12□□□□□ -0.63
LIG1-211ENST00000596457 USP45Q70EL2 814 aa11.12□□□□□ -0.63
LIG1-211ENST00000596457 TSPAN33Q86UF1 283 aa11.12□□□□□ -0.63
LIG1-211ENST00000596457 ZSCAN30Q86W11 494 aa11.12□□□□□ -0.63
LIG1-211ENST00000596457 SPATS2Q86XZ4 545 aaKnown RBP11.12□□□□□ -0.63
LIG1-211ENST00000596457 SLC35F6Q8N357 371 aa11.12□□□□□ -0.63
LIG1-211ENST00000596457 C1orf54Q8WWF1 131 aa11.12□□□□□ -0.63
LIG1-211ENST00000596457 IMP4Q96G21 291 aaKnown RBP11.12□□□□□ -0.63
LIG1-211ENST00000596457 BMFQ96LC9 184 aa11.12□□□□□ -0.63
LIG1-211ENST00000596457 LENG8Q96PV6 779 aaPredicted RBP11.12□□□□□ -0.63
LIG1-211ENST00000596457 TM7SF3Q9NS93 570 aa11.12□□□□□ -0.63
LIG1-211ENST00000596457 GOLGA6AQ9NYA3 693 aa11.12□□□□□ -0.63
LIG1-211ENST00000596457 PYCARDQ9ULZ3 195 aa11.12□□□□□ -0.63
LIG1-211ENST00000596457 FNDC3AQ9Y2H6 1198 aaKnown RBP11.12□□□□□ -0.63
LIG1-211ENST00000596457 GON4LQ3T8J9 2241 aa11.12□□□□□ -0.63
LIG1-211ENST00000596457 ASH1LQ9NR48 2969 aaKnown RBP11.11□□□□□ -0.63
LIG1-211ENST00000596457 A0A0J9YYE9 177 aa11.11□□□□□ -0.63
LIG1-211ENST00000596457 USP27XA6NNY8 438 aa11.11□□□□□ -0.63
LIG1-211ENST00000596457 RECQL5O94762 991 aaPredicted RBP11.11□□□□□ -0.63
LIG1-211ENST00000596457 CLDN7O95471 211 aa11.11□□□□□ -0.63
LIG1-211ENST00000596457 PRLP01236 227 aa11.11□□□□□ -0.63
LIG1-211ENST00000596457 TRBC1P01850 177 aa11.11□□□□□ -0.63
LIG1-211ENST00000596457 SLC4A1P02730 911 aa11.11□□□□□ -0.63
LIG1-211ENST00000596457 PIRTP0C851 137 aa11.11□□□□□ -0.63
LIG1-211ENST00000596457 IGFALSP35858 605 aa11.11□□□□□ -0.63
LIG1-211ENST00000596457 TNNT3P45378 269 aaPredicted RBP11.11□□□□□ -0.63
LIG1-211ENST00000596457 CDK18Q07002 472 aa11.11□□□□□ -0.63
LIG1-211ENST00000596457 PDE1CQ14123 709 aaPredicted RBP11.11□□□□□ -0.63
LIG1-211ENST00000596457 CNGA3Q16281 694 aa11.11□□□□□ -0.63
LIG1-211ENST00000596457 ZNF542PQ5EBM4 170 aa11.11□□□□□ -0.63
LIG1-211ENST00000596457 ANKRD20A2Q5SQ80 823 aa11.11□□□□□ -0.63
LIG1-211ENST00000596457 ANKRD20A1Q5TYW2 823 aa11.11□□□□□ -0.63
LIG1-211ENST00000596457 ANKRD20A3Q5VUR7 823 aa11.11□□□□□ -0.63
LIG1-211ENST00000596457 CRTC1Q6UUV9 634 aa11.11□□□□□ -0.63
LIG1-211ENST00000596457 HSD11B1LQ7Z5J1 315 aa11.11□□□□□ -0.63
LIG1-211ENST00000596457 SLC13A5Q86YT5 568 aaPredicted RBP11.11□□□□□ -0.63
LIG1-211ENST00000596457 TAB3Q8N5C8 712 aaPredicted RBP11.11□□□□□ -0.63
LIG1-211ENST00000596457 SLC25A41Q8N5S1 370 aa11.11□□□□□ -0.63
LIG1-211ENST00000596457 TP53I13Q8NBR0 393 aaPredicted RBP11.11□□□□□ -0.63
LIG1-211ENST00000596457 TMEM145Q8NBT3 493 aa11.11□□□□□ -0.63
LIG1-211ENST00000596457 CCDC110Q8TBZ0 833 aa11.11□□□□□ -0.63
LIG1-211ENST00000596457 SETD7Q8WTS6 366 aaKnown RBP11.11□□□□□ -0.63
LIG1-211ENST00000596457 ASB12Q8WXK4 309 aa11.11□□□□□ -0.63
LIG1-211ENST00000596457 ATG4AQ8WYN0 398 aa11.11□□□□□ -0.63
LIG1-211ENST00000596457 CENPTQ96BT3 561 aa11.11□□□□□ -0.63
LIG1-211ENST00000596457 SCRN2Q96FV2 425 aa11.11□□□□□ -0.63
LIG1-211ENST00000596457 VAT1Q99536 393 aa11.11□□□□□ -0.63
LIG1-211ENST00000596457 KLF6Q99612 283 aaPredicted RBP11.11□□□□□ -0.63
LIG1-211ENST00000596457 MLPHQ9BV36 600 aaPredicted RBP11.11□□□□□ -0.63
LIG1-211ENST00000596457 TLR10Q9BXR5 811 aa11.11□□□□□ -0.63
LIG1-211ENST00000596457 ADGRE3Q9BY15 652 aa11.11□□□□□ -0.63
LIG1-211ENST00000596457 FAM153AQ9UHL3 310 aa11.11□□□□□ -0.63
LIG1-211ENST00000596457 CD84Q9UIB8 345 aa11.11□□□□□ -0.63
LIG1-211ENST00000596457 TRHDEQ9UKU6 1024 aa11.11□□□□□ -0.63
LIG1-211ENST00000596457 DNPEPQ9ULA0 475 aa11.11□□□□□ -0.63
LIG1-211ENST00000596457 TDRD6O60522 2096 aaKnown RBP11.11□□□□□ -0.63
LIG1-211ENST00000596457 C1orf232A0A0U1RR37 186 aa11.1□□□□□ -0.63
LIG1-211ENST00000596457 ANKRD66B4E2M5 251 aa11.1□□□□□ -0.63
LIG1-211ENST00000596457 KIF5CO60282 957 aa11.1□□□□□ -0.63
LIG1-211ENST00000596457 SDC3O75056 442 aa11.1□□□□□ -0.63
LIG1-211ENST00000596457 HEXIM1O94992 359 aaKnown RBP11.1□□□□□ -0.63
LIG1-211ENST00000596457 KCNK5O95279 499 aa11.1□□□□□ -0.63
LIG1-211ENST00000596457 ITGAVP06756 1048 aa11.1□□□□□ -0.63
LIG1-211ENST00000596457 CEACAM1P13688 526 aa11.1□□□□□ -0.63
LIG1-211ENST00000596457 LHCGRP22888 699 aa11.1□□□□□ -0.63
LIG1-211ENST00000596457 PSMB4P28070 264 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms