RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 BMFQ96LC9 184 aa11.94□□□□□ -0.5
LIG3-213ENST00000590630 RBM15Q96T37 977 aaKnown RBP eCLIP11.94□□□□□ -0.5
LIG3-213ENST00000590630 CARD9Q9H257 536 aa11.94□□□□□ -0.5
LIG3-213ENST00000590630 GLOD4Q9HC38 313 aa11.94□□□□□ -0.5
LIG3-213ENST00000590630 KCTD5Q9NXV2 234 aa11.94□□□□□ -0.5
LIG3-213ENST00000590630 KLHL8Q9P2G9 620 aaPredicted RBP11.94□□□□□ -0.5
LIG3-213ENST00000590630 CHKBQ9Y259 395 aa11.94□□□□□ -0.5
LIG3-213ENST00000590630 BPTFQ12830 3046 aa11.94□□□□□ -0.5
LIG3-213ENST00000590630 ARID1BQ8NFD5 2236 aaPredicted RBP11.94□□□□□ -0.5
LIG3-213ENST00000590630 A0A0J9YYE9 177 aa11.93□□□□□ -0.5
LIG3-213ENST00000590630 CAPN8A6NHC0 703 aa11.93□□□□□ -0.5
LIG3-213ENST00000590630 A8MX80 341 aa11.93□□□□□ -0.5
LIG3-213ENST00000590630 KCNK3O14649 394 aa11.93□□□□□ -0.5
LIG3-213ENST00000590630 FLRT2O43155 660 aa11.93□□□□□ -0.5
LIG3-213ENST00000590630 ZSCAN12O43309 604 aa11.93□□□□□ -0.5
LIG3-213ENST00000590630 RECQL5O94762 991 aaPredicted RBP11.93□□□□□ -0.5
LIG3-213ENST00000590630 STK10O94804 968 aaKnown RBP11.93□□□□□ -0.5
LIG3-213ENST00000590630 HEXIM1O94992 359 aaKnown RBP11.93□□□□□ -0.5
LIG3-213ENST00000590630 PRLP01236 227 aa11.93□□□□□ -0.5
LIG3-213ENST00000590630 TRBC1P01850 177 aa11.93□□□□□ -0.5
LIG3-213ENST00000590630 ZNF30P17039 623 aa11.93□□□□□ -0.5
LIG3-213ENST00000590630 LHCGRP22888 699 aa11.93□□□□□ -0.5
LIG3-213ENST00000590630 RBL1P28749 1068 aa11.93□□□□□ -0.5
LIG3-213ENST00000590630 IGFALSP35858 605 aa11.93□□□□□ -0.5
LIG3-213ENST00000590630 RXRGP48443 463 aa11.93□□□□□ -0.5
LIG3-213ENST00000590630 PFN3P60673 137 aa11.93□□□□□ -0.5
LIG3-213ENST00000590630 YPEL5P62699 121 aa11.93□□□□□ -0.5
LIG3-213ENST00000590630 ARHGEF7Q14155 803 aa11.93□□□□□ -0.5
LIG3-213ENST00000590630 IRF4Q15306 451 aa11.93□□□□□ -0.5
LIG3-213ENST00000590630 CNGA3Q16281 694 aa11.93□□□□□ -0.5
LIG3-213ENST00000590630 WSCD2Q2TBF2 565 aa11.93□□□□□ -0.5
LIG3-213ENST00000590630 DBX2Q6ZNG2 339 aa11.93□□□□□ -0.5
LIG3-213ENST00000590630 ERMP1Q7Z2K6 904 aa11.93□□□□□ -0.5
LIG3-213ENST00000590630 ZNF567Q8N184 647 aa11.93□□□□□ -0.5
LIG3-213ENST00000590630 SLC22A18ASQ8N1D0 253 aa11.93□□□□□ -0.5
LIG3-213ENST00000590630 IFT43Q96FT9 208 aa11.93□□□□□ -0.5
LIG3-213ENST00000590630 LYSMD1Q96S90 227 aa11.93□□□□□ -0.5
LIG3-213ENST00000590630 KCNF1Q9H3M0 494 aa11.93□□□□□ -0.5
LIG3-213ENST00000590630 SLC32A1Q9H598 525 aa11.93□□□□□ -0.5
LIG3-213ENST00000590630 COQ6Q9Y2Z9 468 aa11.93□□□□□ -0.5
LIG3-213ENST00000590630 LRP4O75096 1905 aa11.92□□□□□ -0.5
LIG3-213ENST00000590630 SPTY2D1-AS1A0A0U1RR47 76 aa11.92□□□□□ -0.5
LIG3-213ENST00000590630 ANKRD66B4E2M5 251 aa11.92□□□□□ -0.5
LIG3-213ENST00000590630 ALPIP09923 528 aa11.92□□□□□ -0.5
LIG3-213ENST00000590630 CEACAM1P13688 526 aa11.92□□□□□ -0.5
LIG3-213ENST00000590630 CTPS1P17812 591 aa11.92□□□□□ -0.5
LIG3-213ENST00000590630 NFKB1P19838 968 aa11.92□□□□□ -0.5
LIG3-213ENST00000590630 CD68P34810 354 aaPredicted RBP11.92□□□□□ -0.5
LIG3-213ENST00000590630 HNF1BP35680 557 aa11.92□□□□□ -0.5
LIG3-213ENST00000590630 THOP1P52888 689 aa11.92□□□□□ -0.5
LIG3-213ENST00000590630 MTM1Q13496 603 aa11.92□□□□□ -0.5
LIG3-213ENST00000590630 PTK2BQ14289 1009 aa11.92□□□□□ -0.5
LIG3-213ENST00000590630 ACOX1Q15067 660 aa11.92□□□□□ -0.5
LIG3-213ENST00000590630 INAVAQ3KP66 663 aa11.92□□□□□ -0.5
LIG3-213ENST00000590630 ITPRIPL1Q6GPH6 555 aa11.92□□□□□ -0.5
LIG3-213ENST00000590630 DARS2Q6PI48 645 aaKnown RBP11.92□□□□□ -0.5
LIG3-213ENST00000590630 PID1Q7Z2X4 250 aa11.92□□□□□ -0.5
LIG3-213ENST00000590630 PARGQ86W56 976 aa11.92□□□□□ -0.5
LIG3-213ENST00000590630 NAXDQ8IW45 347 aa11.92□□□□□ -0.5
LIG3-213ENST00000590630 RAVER1Q8IY67 606 aaKnown RBP11.92□□□□□ -0.5
LIG3-213ENST00000590630 CBARPQ8N350 705 aaPredicted RBP11.92□□□□□ -0.5
LIG3-213ENST00000590630 LPCAT1Q8NF37 534 aa11.92□□□□□ -0.5
LIG3-213ENST00000590630 SPATA22Q8NHS9 363 aa11.92□□□□□ -0.5
LIG3-213ENST00000590630 COQ10AQ96MF6 247 aa11.92□□□□□ -0.5
LIG3-213ENST00000590630 FCRL5Q96RD9 977 aa11.92□□□□□ -0.5
LIG3-213ENST00000590630 TRIB3Q96RU7 358 aa11.92□□□□□ -0.5
LIG3-213ENST00000590630 FRMD8P1Q9BZ68 369 aaPredicted RBP11.92□□□□□ -0.5
LIG3-213ENST00000590630 MBNL1Q9NR56 388 aaKnown RBP11.92□□□□□ -0.5
LIG3-213ENST00000590630 FAM153AQ9UHL3 310 aa11.92□□□□□ -0.5
LIG3-213ENST00000590630 GOLGA4Q13439 2230 aaKnown RBP11.92□□□□□ -0.5
LIG3-213ENST00000590630 COL5A1P20908 1838 aaPredicted RBP11.92□□□□□ -0.5
LIG3-213ENST00000590630 KCNN4O15554 427 aa11.91□□□□□ -0.5
LIG3-213ENST00000590630 SH3BP5O60239 455 aa11.91□□□□□ -0.5
LIG3-213ENST00000590630 KCNK5O95279 499 aa11.91□□□□□ -0.5
LIG3-213ENST00000590630 MT-CYBP00156 380 aaPredicted RBP11.91□□□□□ -0.5
LIG3-213ENST00000590630 GM2AP17900 193 aa11.91□□□□□ -0.5
LIG3-213ENST00000590630 EPHA8P29322 1005 aaPredicted RBP11.91□□□□□ -0.5
LIG3-213ENST00000590630 GRK6P43250 576 aa11.91□□□□□ -0.5
LIG3-213ENST00000590630 TNNT3P45378 269 aaPredicted RBP11.91□□□□□ -0.5
LIG3-213ENST00000590630 NOVA1P51513 510 aaKnown RBP11.91□□□□□ -0.5
LIG3-213ENST00000590630 IL9RQ01113 521 aa11.91□□□□□ -0.5
LIG3-213ENST00000590630 CDK18Q07002 472 aa11.91□□□□□ -0.5
LIG3-213ENST00000590630 PDE1CQ14123 709 aaPredicted RBP11.91□□□□□ -0.5
LIG3-213ENST00000590630 FZD2Q14332 565 aa11.91□□□□□ -0.5
LIG3-213ENST00000590630 INPP5AQ14642 412 aa11.91□□□□□ -0.5
LIG3-213ENST00000590630 SHBQ15464 509 aa11.91□□□□□ -0.5
LIG3-213ENST00000590630 PCSK7Q16549 785 aa11.91□□□□□ -0.5
LIG3-213ENST00000590630 QPCTQ16769 361 aa11.91□□□□□ -0.5
LIG3-213ENST00000590630 PPM1JQ5JR12 505 aa11.91□□□□□ -0.5
LIG3-213ENST00000590630 PRAMEF14Q5SWL7 426 aa11.91□□□□□ -0.5
LIG3-213ENST00000590630 LRRC66Q68CR7 880 aa11.91□□□□□ -0.5
LIG3-213ENST00000590630 CCDC70Q6NSX1 233 aa11.91□□□□□ -0.5
LIG3-213ENST00000590630 PSAPL1Q6NUJ1 521 aa11.91□□□□□ -0.5
LIG3-213ENST00000590630 ESRP1Q6NXG1 681 aaKnown RBP11.91□□□□□ -0.5
LIG3-213ENST00000590630 CRTC1Q6UUV9 634 aa11.91□□□□□ -0.5
LIG3-213ENST00000590630 MACC1Q6ZN28 852 aa11.91□□□□□ -0.5
LIG3-213ENST00000590630 TSPAN33Q86UF1 283 aa11.91□□□□□ -0.5
LIG3-213ENST00000590630 SAP25Q8TEE9 199 aa11.91□□□□□ -0.5
LIG3-213ENST00000590630 SETD7Q8WTS6 366 aaKnown RBP11.91□□□□□ -0.5
LIG3-213ENST00000590630 NUS1Q96E22 293 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms