RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 HDAC6Q9UBN7 1215 aa5.97□□□□□ -1.45
VPS53-219ENST00000576019 FBXL17Q9UF56 701 aa5.97□□□□□ -1.45
VPS53-219ENST00000576019 INTS6Q9UL03 887 aaKnown RBP5.97□□□□□ -1.45
VPS53-219ENST00000576019 NENFQ9UMX5 172 aa5.97□□□□□ -1.45
VPS53-219ENST00000576019 PPIEQ9UNP9 301 aaKnown RBP5.97□□□□□ -1.45
VPS53-219ENST00000576019 COPG1Q9Y678 874 aaKnown RBP5.97□□□□□ -1.45
VPS53-219ENST00000576019 FPGT-TNNI3KV9GXZ4 949 aa5.97□□□□□ -1.45
VPS53-219ENST00000576019 POLQO75417 2590 aa5.97□□□□□ -1.45
VPS53-219ENST00000576019 MED23Q9ULK4 1368 aa5.96□□□□□ -1.45
VPS53-219ENST00000576019 A4D1N5 150 aa5.96□□□□□ -1.46
VPS53-219ENST00000576019 EIF3CLB5ME19 914 aaKnown RBP5.96□□□□□ -1.46
VPS53-219ENST00000576019 IFNL4K9M1U5 179 aa5.96□□□□□ -1.46
VPS53-219ENST00000576019 PAGE4O60829 102 aa5.96□□□□□ -1.46
VPS53-219ENST00000576019 SUN1O94901 812 aa5.96□□□□□ -1.46
VPS53-219ENST00000576019 P4HA1P13674 534 aa5.96□□□□□ -1.46
VPS53-219ENST00000576019 ARSAP15289 507 aa5.96□□□□□ -1.46
VPS53-219ENST00000576019 HLA-DPA1P20036 260 aa5.96□□□□□ -1.46
VPS53-219ENST00000576019 ITGB7P26010 798 aa5.96□□□□□ -1.46
VPS53-219ENST00000576019 LIMS1P48059 325 aa5.96□□□□□ -1.46
VPS53-219ENST00000576019 NDUFV1P49821 464 aa5.96□□□□□ -1.46
VPS53-219ENST00000576019 NPY4RP50391 375 aa5.96□□□□□ -1.46
VPS53-219ENST00000576019 STAT2P52630 851 aa5.96□□□□□ -1.46
VPS53-219ENST00000576019 EFNA5P52803 228 aa5.96□□□□□ -1.46
VPS53-219ENST00000576019 EVCP57679 992 aa5.96□□□□□ -1.46
VPS53-219ENST00000576019 POLR2FP61218 127 aaKnown RBP5.96□□□□□ -1.46
VPS53-219ENST00000576019 SRSF3P84103 164 aaKnown RBP5.96□□□□□ -1.46
VPS53-219ENST00000576019 SP2Q02086 613 aa5.96□□□□□ -1.46
VPS53-219ENST00000576019 C5orf22Q49AR2 442 aa5.96□□□□□ -1.46
VPS53-219ENST00000576019 ZMAT1Q5H9K5 638 aa5.96□□□□□ -1.46
VPS53-219ENST00000576019 PRR31Q5SQ13 230 aa5.96□□□□□ -1.46
VPS53-219ENST00000576019 MFSD14CQ5VZR4 134 aa5.96□□□□□ -1.46
VPS53-219ENST00000576019 NLRP14Q86W24 1093 aa5.96□□□□□ -1.46
VPS53-219ENST00000576019 TRPV1Q8NER1 839 aa5.96□□□□□ -1.46
VPS53-219ENST00000576019 OVCA2Q8WZ82 227 aa5.96□□□□□ -1.46
VPS53-219ENST00000576019 RABGGTAQ92696 567 aa5.96□□□□□ -1.46
VPS53-219ENST00000576019 FAM162AQ96A26 154 aa5.96□□□□□ -1.46
VPS53-219ENST00000576019 AJUBAQ96IF1 538 aa5.96□□□□□ -1.46
VPS53-219ENST00000576019 CCDC114Q96M63 670 aa5.96□□□□□ -1.46
VPS53-219ENST00000576019 DGAT2Q96PD7 388 aa5.96□□□□□ -1.46
VPS53-219ENST00000576019 TMEM237Q96Q45 408 aa5.96□□□□□ -1.46
VPS53-219ENST00000576019 FIZ1Q96SL8 496 aa5.96□□□□□ -1.46
VPS53-219ENST00000576019 PAFAH2Q99487 392 aa5.96□□□□□ -1.46
VPS53-219ENST00000576019 TCF25Q9BQ70 676 aa5.96□□□□□ -1.46
VPS53-219ENST00000576019 NAA11Q9BSU3 229 aaPredicted RBP5.96□□□□□ -1.46
VPS53-219ENST00000576019 IKZF4Q9H2S9 585 aa5.96□□□□□ -1.46
VPS53-219ENST00000576019 RXFP3Q9NSD7 469 aa5.96□□□□□ -1.46
VPS53-219ENST00000576019 TBCCD1Q9NVR7 557 aa5.96□□□□□ -1.46
VPS53-219ENST00000576019 AKAP7Q9P0M2 348 aaPredicted RBP5.96□□□□□ -1.46
VPS53-219ENST00000576019 POLKQ9UBT6 870 aa5.96□□□□□ -1.46
VPS53-219ENST00000576019 KLQ9UEF7 1012 aa5.96□□□□□ -1.46
VPS53-219ENST00000576019 BLOC1S6Q9UL45 172 aa5.96□□□□□ -1.46
VPS53-219ENST00000576019 AGTPBP1Q9UPW5 1226 aa5.96□□□□□ -1.46
VPS53-219ENST00000576019 PCDHA5Q9Y5H7 936 aa5.96□□□□□ -1.46
VPS53-219ENST00000576019 LOC285556D6RIA3 1793 aa5.95□□□□□ -1.46
VPS53-219ENST00000576019 LOC100996750A0A140TA64 210 aa5.95□□□□□ -1.46
VPS53-219ENST00000576019 TRBC2A0A5B9 178 aa5.95□□□□□ -1.46
VPS53-219ENST00000576019 ARHGEF37A1IGU5 675 aa5.95□□□□□ -1.46
VPS53-219ENST00000576019 OR2A25A4D2G3 310 aa5.95□□□□□ -1.46
VPS53-219ENST00000576019 CCDC69A6NI79 296 aa5.95□□□□□ -1.46
VPS53-219ENST00000576019 ZNF213O14771 459 aa5.95□□□□□ -1.46
VPS53-219ENST00000576019 KERAO60938 352 aa5.95□□□□□ -1.46
VPS53-219ENST00000576019 PRB1P04280 392 aa5.95□□□□□ -1.46
VPS53-219ENST00000576019 ERBB2P04626 1255 aa5.95□□□□□ -1.46
VPS53-219ENST00000576019 TPOP07202 933 aa5.95□□□□□ -1.46
VPS53-219ENST00000576019 GALTP07902 379 aa5.95□□□□□ -1.46
VPS53-219ENST00000576019 CYP3A4P08684 503 aa5.95□□□□□ -1.46
VPS53-219ENST00000576019 PRR35P0CG20 571 aa5.95□□□□□ -1.46
VPS53-219ENST00000576019 TMIGD3P0DMS9 266 aaPredicted RBP5.95□□□□□ -1.46
VPS53-219ENST00000576019 CYBAP13498 195 aa5.95□□□□□ -1.46
VPS53-219ENST00000576019 GCSHP23434 173 aa5.95□□□□□ -1.46
VPS53-219ENST00000576019 CDR1P51861 262 aa5.95□□□□□ -1.46
VPS53-219ENST00000576019 PMS2P54278 862 aa5.95□□□□□ -1.46
VPS53-219ENST00000576019 YBEYP58557 167 aaPredicted RBP5.95□□□□□ -1.46
VPS53-219ENST00000576019 TLE3Q04726 772 aa5.95□□□□□ -1.46
VPS53-219ENST00000576019 ACTN3Q08043 901 aaPredicted RBP5.95□□□□□ -1.46
VPS53-219ENST00000576019 RIN1Q13671 783 aa5.95□□□□□ -1.46
VPS53-219ENST00000576019 BYSLQ13895 437 aaKnown RBP5.95□□□□□ -1.46
VPS53-219ENST00000576019 CBFBQ13951 182 aa5.95□□□□□ -1.46
VPS53-219ENST00000576019 ASTE1Q2TB18 679 aaPredicted RBP5.95□□□□□ -1.46
VPS53-219ENST00000576019 CASC1Q6TDU7 716 aa5.95□□□□□ -1.46
VPS53-219ENST00000576019 DOK3Q7L591 496 aa5.95□□□□□ -1.46
VPS53-219ENST00000576019 ZNF605Q86T29 641 aa5.95□□□□□ -1.46
VPS53-219ENST00000576019 SLC9B2Q86UD5 537 aa5.95□□□□□ -1.46
VPS53-219ENST00000576019 RHPN2Q8IUC4 686 aa5.95□□□□□ -1.46
VPS53-219ENST00000576019 TICAM1Q8IUC6 712 aa5.95□□□□□ -1.46
VPS53-219ENST00000576019 IZUMO1Q8IYV9 350 aa5.95□□□□□ -1.46
VPS53-219ENST00000576019 CCAR2Q8N163 923 aaKnown RBP5.95□□□□□ -1.46
VPS53-219ENST00000576019 VPS52Q8N1B4 723 aa5.95□□□□□ -1.46
VPS53-219ENST00000576019 C10orf53Q8N6V4 93 aa5.95□□□□□ -1.46
VPS53-219ENST00000576019 AGBL5Q8NDL9 886 aa5.95□□□□□ -1.46
VPS53-219ENST00000576019 SETD6Q8TBK2 473 aa5.95□□□□□ -1.46
VPS53-219ENST00000576019 ATG4AQ8WYN0 398 aa5.95□□□□□ -1.46
VPS53-219ENST00000576019 PNKPQ96T60 521 aa5.95□□□□□ -1.46
VPS53-219ENST00000576019 SPATA25Q9BR10 227 aa5.95□□□□□ -1.46
VPS53-219ENST00000576019 CPPED1Q9BRF8 314 aaPredicted RBP5.95□□□□□ -1.46
VPS53-219ENST00000576019 TUBB6Q9BUF5 446 aa5.95□□□□□ -1.46
VPS53-219ENST00000576019 HDHD5Q9BXW7 423 aa5.95□□□□□ -1.46
VPS53-219ENST00000576019 FUT8Q9BYC5 575 aa5.95□□□□□ -1.46
VPS53-219ENST00000576019 KRTAP4-6Q9BYQ5 205 aa5.95□□□□□ -1.46
VPS53-219ENST00000576019 ZNF552Q9H707 407 aaPredicted RBP5.95□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 80.6 ms