RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 TP53INP2Q8IXH6 220 aa8.15□□□□□ -1.1
VPS53-214ENST00000572607 PARP9Q8IXQ6 854 aa8.15□□□□□ -1.1
VPS53-214ENST00000572607 CHCHD4Q8N4Q1 142 aa8.15□□□□□ -1.1
VPS53-214ENST00000572607 TC2NQ8N9U0 490 aa8.15□□□□□ -1.1
VPS53-214ENST00000572607 CCNYQ8ND76 341 aa8.15□□□□□ -1.1
VPS53-214ENST00000572607 ATL2Q8NHH9 583 aa8.15□□□□□ -1.1
VPS53-214ENST00000572607 PCDH19Q8TAB3 1148 aa8.15□□□□□ -1.1
VPS53-214ENST00000572607 BTN2A2Q8WVV5 523 aa8.15□□□□□ -1.1
VPS53-214ENST00000572607 ZCCHC14Q8WYQ9 949 aaKnown RBP8.15□□□□□ -1.1
VPS53-214ENST00000572607 PANX2Q96RD6 677 aa8.15□□□□□ -1.1
VPS53-214ENST00000572607 MGME1Q9BQP7 344 aa8.15□□□□□ -1.1
VPS53-214ENST00000572607 POLR1EQ9GZS1 481 aaKnown RBP8.15□□□□□ -1.1
VPS53-214ENST00000572607 RBSNQ9H1K0 784 aa8.15□□□□□ -1.1
VPS53-214ENST00000572607 NT5MQ9NPB1 228 aa8.15□□□□□ -1.1
VPS53-214ENST00000572607 MAP10Q9P2G4 905 aa8.15□□□□□ -1.1
VPS53-214ENST00000572607 TTLL3Q9Y4R7 772 aa8.15□□□□□ -1.1
VPS53-214ENST00000572607 HELZ2Q9BYK8 2649 aaKnown RBP8.14□□□□□ -1.11
VPS53-214ENST00000572607 SPTY2D1-AS1A0A0U1RR47 76 aa8.14□□□□□ -1.11
VPS53-214ENST00000572607 FAM221BA6H8Z2 402 aa8.14□□□□□ -1.11
VPS53-214ENST00000572607 POM121BA6NF01 834 aa8.14□□□□□ -1.11
VPS53-214ENST00000572607 PPP1R12AO14974 1030 aaPredicted RBP8.14□□□□□ -1.11
VPS53-214ENST00000572607 MUSKO15146 869 aa8.14□□□□□ -1.11
VPS53-214ENST00000572607 MATN3O15232 486 aa8.14□□□□□ -1.11
VPS53-214ENST00000572607 RAD51BO15315 384 aa8.14□□□□□ -1.11
VPS53-214ENST00000572607 SPINT1O43278 529 aa8.14□□□□□ -1.11
VPS53-214ENST00000572607 PSTPIP1O43586 416 aa8.14□□□□□ -1.11
VPS53-214ENST00000572607 BUB1BO60566 1050 aaPredicted RBP8.14□□□□□ -1.11
VPS53-214ENST00000572607 RFPL3O75679 317 aa8.14□□□□□ -1.11
VPS53-214ENST00000572607 PIAS2O75928 621 aa8.14□□□□□ -1.11
VPS53-214ENST00000572607 ZIC2O95409 532 aaPredicted RBP8.14□□□□□ -1.11
VPS53-214ENST00000572607 CSF2P04141 144 aa8.14□□□□□ -1.11
VPS53-214ENST00000572607 PRKCGP05129 697 aa8.14□□□□□ -1.11
VPS53-214ENST00000572607 PCCBP05166 539 aa8.14□□□□□ -1.11
VPS53-214ENST00000572607 C1SP09871 688 aa8.14□□□□□ -1.11
VPS53-214ENST00000572607 ATXN1LP0C7T5 689 aaKnown RBP8.14□□□□□ -1.11
VPS53-214ENST00000572607 NME1P15531 152 aaKnown RBP8.14□□□□□ -1.11
VPS53-214ENST00000572607 ITIH2P19823 946 aa8.14□□□□□ -1.11
VPS53-214ENST00000572607 CES1P23141 567 aa8.14□□□□□ -1.11
VPS53-214ENST00000572607 CCNCP24863 283 aa8.14□□□□□ -1.11
VPS53-214ENST00000572607 BLKP51451 505 aa8.14□□□□□ -1.11
VPS53-214ENST00000572607 NAP1L1P55209 391 aaKnown RBP8.14□□□□□ -1.11
VPS53-214ENST00000572607 PFN3P60673 137 aa8.14□□□□□ -1.11
VPS53-214ENST00000572607 MAXP61244 160 aa8.14□□□□□ -1.11
VPS53-214ENST00000572607 ARHGEF7Q14155 803 aa8.14□□□□□ -1.11
VPS53-214ENST00000572607 TCEAL1Q15170 157 aa8.14□□□□□ -1.11
VPS53-214ENST00000572607 SOWAHCQ53LP3 525 aaPredicted RBP8.14□□□□□ -1.11
VPS53-214ENST00000572607 ARMC12Q5T9G4 340 aa8.14□□□□□ -1.11
VPS53-214ENST00000572607 DPPA4Q7L190 304 aa8.14□□□□□ -1.11
VPS53-214ENST00000572607 BZW1Q7L1Q6 419 aaKnown RBP8.14□□□□□ -1.11
VPS53-214ENST00000572607 RAB44Q7Z6P3 723 aaPredicted RBP8.14□□□□□ -1.11
VPS53-214ENST00000572607 VSIG1Q86XK7 387 aa8.14□□□□□ -1.11
VPS53-214ENST00000572607 CPNE8Q86YQ8 564 aa8.14□□□□□ -1.11
VPS53-214ENST00000572607 RFX6Q8HWS3 928 aa8.14□□□□□ -1.11
VPS53-214ENST00000572607 CCDC13Q8IYE1 715 aa8.14□□□□□ -1.11
VPS53-214ENST00000572607 SLC22A18ASQ8N1D0 253 aa8.14□□□□□ -1.11
VPS53-214ENST00000572607 TXLNBQ8N3L3 684 aa8.14□□□□□ -1.11
VPS53-214ENST00000572607 GALNT15Q8N3T1 639 aa8.14□□□□□ -1.11
VPS53-214ENST00000572607 PNPLA1Q8N8W4 532 aa8.14□□□□□ -1.11
VPS53-214ENST00000572607 TP53I13Q8NBR0 393 aaPredicted RBP8.14□□□□□ -1.11
VPS53-214ENST00000572607 RAPGEF5Q92565 580 aa8.14□□□□□ -1.11
VPS53-214ENST00000572607 FAF2Q96CS3 445 aa8.14□□□□□ -1.11
VPS53-214ENST00000572607 ECHDC3Q96DC8 303 aa8.14□□□□□ -1.11
VPS53-214ENST00000572607 CALR3Q96L12 384 aaKnown RBP8.14□□□□□ -1.11
VPS53-214ENST00000572607 BMFQ96LC9 184 aa8.14□□□□□ -1.11
VPS53-214ENST00000572607 BBC3Q96PG8 261 aaPredicted RBP8.14□□□□□ -1.11
VPS53-214ENST00000572607 RNF157Q96PX1 679 aa8.14□□□□□ -1.11
VPS53-214ENST00000572607 KLF6Q99612 283 aaPredicted RBP8.14□□□□□ -1.11
VPS53-214ENST00000572607 DUSP23Q9BVJ7 150 aa8.14□□□□□ -1.11
VPS53-214ENST00000572607 SLC13A1Q9BZW2 595 aa8.14□□□□□ -1.11
VPS53-214ENST00000572607 NOD2Q9HC29 1040 aa8.14□□□□□ -1.11
VPS53-214ENST00000572607 RBM22Q9NW64 420 aaKnown RBP eCLIP8.14□□□□□ -1.11
VPS53-214ENST00000572607 KCTD5Q9NXV2 234 aa8.14□□□□□ -1.11
VPS53-214ENST00000572607 SPASTQ9UBP0 616 aa8.14□□□□□ -1.11
VPS53-214ENST00000572607 AMACRQ9UHK6 382 aa8.14□□□□□ -1.11
VPS53-214ENST00000572607 SBDSQ9Y3A5 250 aaKnown RBP eCLIP8.14□□□□□ -1.11
VPS53-214ENST00000572607 MSRB2Q9Y3D2 182 aa8.14□□□□□ -1.11
VPS53-214ENST00000572607 PCDHGC4Q9Y5F7 938 aa8.14□□□□□ -1.11
VPS53-214ENST00000572607 PCDHGA1Q9Y5H4 931 aa8.14□□□□□ -1.11
VPS53-214ENST00000572607 PCDHA13Q9Y5I0 950 aa8.14□□□□□ -1.11
VPS53-214ENST00000572607 HEY1Q9Y5J3 304 aa8.14□□□□□ -1.11
VPS53-214ENST00000572607 PLXNA2O75051 1894 aa8.14□□□□□ -1.11
VPS53-214ENST00000572607 APC2O95996 2303 aa8.14□□□□□ -1.11
VPS53-214ENST00000572607 ZNF487B1APH4 448 aa8.13□□□□□ -1.11
VPS53-214ENST00000572607 CACNB4O00305 520 aaPredicted RBP8.13□□□□□ -1.11
VPS53-214ENST00000572607 FFAR2O15552 330 aa8.13□□□□□ -1.11
VPS53-214ENST00000572607 MAP3K6O95382 1288 aa8.13□□□□□ -1.11
VPS53-214ENST00000572607 PEX11BO96011 259 aa8.13□□□□□ -1.11
VPS53-214ENST00000572607 CCNB1P14635 433 aa8.13□□□□□ -1.11
VPS53-214ENST00000572607 CKMT2P17540 419 aa8.13□□□□□ -1.11
VPS53-214ENST00000572607 CR2P20023 1033 aa8.13□□□□□ -1.11
VPS53-214ENST00000572607 COMTP21964 271 aa8.13□□□□□ -1.11
VPS53-214ENST00000572607 KELP23276 732 aa8.13□□□□□ -1.11
VPS53-214ENST00000572607 DGKAP23743 735 aa8.13□□□□□ -1.11
VPS53-214ENST00000572607 VIPR1P32241 457 aa8.13□□□□□ -1.11
VPS53-214ENST00000572607 HNF1BP35680 557 aa8.13□□□□□ -1.11
VPS53-214ENST00000572607 IGFALSP35858 605 aa8.13□□□□□ -1.11
VPS53-214ENST00000572607 PEX5P50542 639 aa8.13□□□□□ -1.11
VPS53-214ENST00000572607 DUSP3P51452 185 aaPredicted RBP8.13□□□□□ -1.11
VPS53-214ENST00000572607 EPHB1P54762 984 aa8.13□□□□□ -1.11
VPS53-214ENST00000572607 DYNLT1P63172 113 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms