RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 TMEM161AQ9NX61 479 aa6.29□□□□□ -1.4
VPS53-212ENST00000572259 TAB2Q9NYJ8 693 aa6.29□□□□□ -1.4
VPS53-212ENST00000572259 WRAP73Q9P2S5 460 aaPredicted RBP6.29□□□□□ -1.4
VPS53-212ENST00000572259 ZNF212Q9UDV6 495 aa6.29□□□□□ -1.4
VPS53-212ENST00000572259 TRPS1Q9UHF7 1281 aa6.29□□□□□ -1.4
VPS53-212ENST00000572259 DERAQ9Y315 318 aa6.29□□□□□ -1.4
VPS53-212ENST00000572259 PHLPP2Q6ZVD8 1323 aa6.28□□□□□ -1.4
VPS53-212ENST00000572259 RALGAPA2Q2PPJ7 1873 aa6.28□□□□□ -1.4
VPS53-212ENST00000572259 FNDC1Q4ZHG4 1894 aaPredicted RBP6.28□□□□□ -1.4
VPS53-212ENST00000572259 COL6A3P12111 3177 aa6.28□□□□□ -1.4
VPS53-212ENST00000572259 A0A0U1RQF3 1178 aa6.28□□□□□ -1.4
VPS53-212ENST00000572259 A0A0U1RQK1 487 aa6.28□□□□□ -1.4
VPS53-212ENST00000572259 ZNF320A2RRD8 509 aa6.28□□□□□ -1.4
VPS53-212ENST00000572259 LINC01553A4QN01 128 aa6.28□□□□□ -1.4
VPS53-212ENST00000572259 LRRIQ4A6NIV6 560 aa6.28□□□□□ -1.4
VPS53-212ENST00000572259 ADAM20O43506 726 aa6.28□□□□□ -1.4
VPS53-212ENST00000572259 KIF5CO60282 957 aa6.28□□□□□ -1.4
VPS53-212ENST00000572259 KERAO60938 352 aa6.28□□□□□ -1.4
VPS53-212ENST00000572259 TPPPO94811 219 aa6.28□□□□□ -1.4
VPS53-212ENST00000572259 EGR1P18146 543 aa6.28□□□□□ -1.4
VPS53-212ENST00000572259 ARL2P36404 184 aa6.28□□□□□ -1.4
VPS53-212ENST00000572259 GP5P40197 560 aa6.28□□□□□ -1.4
VPS53-212ENST00000572259 TKTL1P51854 596 aa6.28□□□□□ -1.4
VPS53-212ENST00000572259 EFNA5P52803 228 aa6.28□□□□□ -1.4
VPS53-212ENST00000572259 PTENP60484 403 aa6.28□□□□□ -1.4
VPS53-212ENST00000572259 ADAM8P78325 824 aa6.28□□□□□ -1.4
VPS53-212ENST00000572259 FAM189BP81408 668 aa6.28□□□□□ -1.4
VPS53-212ENST00000572259 SCAPQ12770 1279 aa6.28□□□□□ -1.4
VPS53-212ENST00000572259 DRP2Q13474 957 aa6.28□□□□□ -1.4
VPS53-212ENST00000572259 RAB39AQ14964 217 aa6.28□□□□□ -1.4
VPS53-212ENST00000572259 MAPKAPK3Q16644 382 aa6.28□□□□□ -1.4
VPS53-212ENST00000572259 TCTN1Q2MV58 587 aa6.28□□□□□ -1.4
VPS53-212ENST00000572259 KHDC1Q4VXA5 237 aaKnown RBP6.28□□□□□ -1.4
VPS53-212ENST00000572259 GARNL3Q5VVW2 1013 aa6.28□□□□□ -1.4
VPS53-212ENST00000572259 RRAGBQ5VZM2 374 aa6.28□□□□□ -1.4
VPS53-212ENST00000572259 ATL3Q6DD88 541 aa6.28□□□□□ -1.4
VPS53-212ENST00000572259 NOTUMQ6P988 496 aa6.28□□□□□ -1.4
VPS53-212ENST00000572259 SLC2A7Q6PXP3 512 aa6.28□□□□□ -1.4
VPS53-212ENST00000572259 PET117Q6UWS5 81 aa6.28□□□□□ -1.4
VPS53-212ENST00000572259 FAM83HQ6ZRV2 1179 aaPredicted RBP6.28□□□□□ -1.4
VPS53-212ENST00000572259 RAB11FIP2Q7L804 512 aa6.28□□□□□ -1.4
VPS53-212ENST00000572259 CCDC186Q7Z3E2 898 aa6.28□□□□□ -1.4
VPS53-212ENST00000572259 ZSCAN2Q7Z7L9 614 aaPredicted RBP6.28□□□□□ -1.4
VPS53-212ENST00000572259 ADGRE4PQ86SQ3 457 aa6.28□□□□□ -1.4
VPS53-212ENST00000572259 SCN4BQ8IWT1 228 aa6.28□□□□□ -1.4
VPS53-212ENST00000572259 CELF5Q8N6W0 485 aaKnown RBP6.28□□□□□ -1.4
VPS53-212ENST00000572259 OR1N1Q8NGS0 311 aa6.28□□□□□ -1.4
VPS53-212ENST00000572259 MAFAQ8NHW3 353 aaPredicted RBP6.28□□□□□ -1.4
VPS53-212ENST00000572259 NFKBIDQ8NI38 313 aa6.28□□□□□ -1.4
VPS53-212ENST00000572259 BRSK1Q8TDC3 778 aa6.28□□□□□ -1.4
VPS53-212ENST00000572259 KRT35Q92764 455 aa6.28□□□□□ -1.4
VPS53-212ENST00000572259 PPP2R3CQ969Q6 453 aa6.28□□□□□ -1.4
VPS53-212ENST00000572259 CCDC51Q96ER9 411 aa6.28□□□□□ -1.4
VPS53-212ENST00000572259 ZNF668Q96K58 619 aaPredicted RBP6.28□□□□□ -1.4
VPS53-212ENST00000572259 RUNDC3BQ96NL0 473 aa6.28□□□□□ -1.4
VPS53-212ENST00000572259 DMRTA2Q96SC8 542 aa6.28□□□□□ -1.4
VPS53-212ENST00000572259 NFKBIZQ9BYH8 718 aa6.28□□□□□ -1.4
VPS53-212ENST00000572259 ZNF518BQ9C0D4 1074 aa6.28□□□□□ -1.4
VPS53-212ENST00000572259 TMEM117Q9H0C3 514 aa6.28□□□□□ -1.4
VPS53-212ENST00000572259 ZCWPW1Q9H0M4 648 aa6.28□□□□□ -1.4
VPS53-212ENST00000572259 XYLT2Q9H1B5 865 aa6.28□□□□□ -1.4
VPS53-212ENST00000572259 POLR3FQ9H1D9 316 aaPredicted RBP6.28□□□□□ -1.4
VPS53-212ENST00000572259 C1orf21Q9H246 121 aa6.28□□□□□ -1.4
VPS53-212ENST00000572259 NDST4Q9H3R1 872 aa6.28□□□□□ -1.4
VPS53-212ENST00000572259 C17orf75Q9HAS0 396 aa6.28□□□□□ -1.4
VPS53-212ENST00000572259 DDX19AQ9NUU7 478 aaKnown RBP6.28□□□□□ -1.4
VPS53-212ENST00000572259 KCND2Q9NZV8 630 aa6.28□□□□□ -1.4
VPS53-212ENST00000572259 CALCOCO1Q9P1Z2 691 aa6.28□□□□□ -1.4
VPS53-212ENST00000572259 CACNG4Q9UBN1 327 aa6.28□□□□□ -1.4
VPS53-212ENST00000572259 HOOK1Q9UJC3 728 aaKnown RBP6.28□□□□□ -1.4
VPS53-212ENST00000572259 LAMP5Q9UJQ1 280 aa6.28□□□□□ -1.4
VPS53-212ENST00000572259 PIN4Q9Y237 131 aaKnown RBP6.28□□□□□ -1.4
VPS53-212ENST00000572259 ADGRA3Q8IWK6 1321 aa6.27□□□□□ -1.41
VPS53-212ENST00000572259 TCHHQ07283 1943 aa6.27□□□□□ -1.41
VPS53-212ENST00000572259 CCDC151A5D8V7 595 aa6.27□□□□□ -1.41
VPS53-212ENST00000572259 KRT87PA6NCN2 255 aa6.27□□□□□ -1.41
VPS53-212ENST00000572259 MBD3L4A6NDZ8 208 aaPredicted RBP6.27□□□□□ -1.41
VPS53-212ENST00000572259 MBD3L3A6NE82 208 aaPredicted RBP6.27□□□□□ -1.41
VPS53-212ENST00000572259 ERICH4A6NGS2 130 aa6.27□□□□□ -1.41
VPS53-212ENST00000572259 TBKBP1A7MCY6 615 aa6.27□□□□□ -1.41
VPS53-212ENST00000572259 H0YCG3 227 aa6.27□□□□□ -1.41
VPS53-212ENST00000572259 PRPSAP2O60256 369 aa6.27□□□□□ -1.41
VPS53-212ENST00000572259 TBC1D4O60343 1298 aa6.27□□□□□ -1.41
VPS53-212ENST00000572259 ZNF623O75123 536 aa6.27□□□□□ -1.41
VPS53-212ENST00000572259 PALMO75781 387 aa6.27□□□□□ -1.41
VPS53-212ENST00000572259 PTPN2P17706 415 aa6.27□□□□□ -1.41
VPS53-212ENST00000572259 IL10P22301 178 aa6.27□□□□□ -1.41
VPS53-212ENST00000572259 TLX1P31314 330 aaPredicted RBP6.27□□□□□ -1.41
VPS53-212ENST00000572259 CTNNB1P35222 781 aa6.27□□□□□ -1.41
VPS53-212ENST00000572259 PGM1P36871 562 aa6.27□□□□□ -1.41
VPS53-212ENST00000572259 BMPR1AP36894 532 aa6.27□□□□□ -1.41
VPS53-212ENST00000572259 NAMPTP43490 491 aa6.27□□□□□ -1.41
VPS53-212ENST00000572259 SLC6A9P48067 706 aa6.27□□□□□ -1.41
VPS53-212ENST00000572259 TRPC1P48995 793 aa6.27□□□□□ -1.41
VPS53-212ENST00000572259 GZMKP49863 264 aa6.27□□□□□ -1.41
VPS53-212ENST00000572259 RPS3AP61247 264 aaKnown RBP6.27□□□□□ -1.41
VPS53-212ENST00000572259 RPP30P78346 268 aaKnown RBP6.27□□□□□ -1.41
VPS53-212ENST00000572259 KRT17Q04695 432 aa6.27□□□□□ -1.41
VPS53-212ENST00000572259 ZBTB16Q05516 673 aa6.27□□□□□ -1.41
VPS53-212ENST00000572259 KLHL30Q0D2K2 578 aa6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms