RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 FADS3Q9Y5Q0 445 aa20.7■□□□□ 0.9
VPS53-210ENST00000571456 TBC1D3DA0A087WVF3 549 aa20.69■□□□□ 0.9
VPS53-210ENST00000571456 TBC1D3IA0A087WXS9 549 aa20.69■□□□□ 0.9
VPS53-210ENST00000571456 TBC1D3EA0A087X179 549 aa20.69■□□□□ 0.9
VPS53-210ENST00000571456 TBC1D3KA0A087X1G2 549 aa20.69■□□□□ 0.9
VPS53-210ENST00000571456 TBC1D3FA6NER0 549 aaPredicted RBP20.69■□□□□ 0.9
VPS53-210ENST00000571456 TBC1D3LB9A6J9 549 aa20.69■□□□□ 0.9
VPS53-210ENST00000571456 NEMP1O14524 444 aa20.69■□□□□ 0.9
VPS53-210ENST00000571456 PSMD3O43242 534 aa20.69■□□□□ 0.9
VPS53-210ENST00000571456 MMP2P08253 660 aa20.69■□□□□ 0.9
VPS53-210ENST00000571456 TBC1D3HP0C7X1 549 aa20.69■□□□□ 0.9
VPS53-210ENST00000571456 CYP2A6P11509 494 aaPredicted RBP20.69■□□□□ 0.9
VPS53-210ENST00000571456 TIMP2P16035 220 aa20.69■□□□□ 0.9
VPS53-210ENST00000571456 NFKB1P19838 968 aa20.69■□□□□ 0.9
VPS53-210ENST00000571456 CD68P34810 354 aaPredicted RBP20.69■□□□□ 0.9
VPS53-210ENST00000571456 GRIA4P48058 902 aa20.69■□□□□ 0.9
VPS53-210ENST00000571456 FNTAP49354 379 aa20.69■□□□□ 0.9
VPS53-210ENST00000571456 METAP1P53582 386 aa20.69■□□□□ 0.9
VPS53-210ENST00000571456 RPS21P63220 83 aaKnown RBP20.69■□□□□ 0.9
VPS53-210ENST00000571456 FAM193AP78312 1265 aa20.69■□□□□ 0.9
VPS53-210ENST00000571456 TUBB2AQ13885 445 aa20.69■□□□□ 0.9
VPS53-210ENST00000571456 POM121L1PQ3SYA9 428 aa20.69■□□□□ 0.9
VPS53-210ENST00000571456 KIAA0895LQ68EN5 471 aa20.69■□□□□ 0.9
VPS53-210ENST00000571456 TBC1D3GQ6DHY5 549 aa20.69■□□□□ 0.9
VPS53-210ENST00000571456 TBC1D3CQ6IPX1 549 aa20.69■□□□□ 0.9
VPS53-210ENST00000571456 USP45Q70EL2 814 aa20.69■□□□□ 0.9
VPS53-210ENST00000571456 PRPF39Q86UA1 669 aaKnown RBP20.69■□□□□ 0.9
VPS53-210ENST00000571456 TBC1D3Q8IZP1 549 aaPredicted RBP20.69■□□□□ 0.9
VPS53-210ENST00000571456 PRELID2Q8N945 189 aa20.69■□□□□ 0.9
VPS53-210ENST00000571456 GRK7Q8WTQ7 553 aa20.69■□□□□ 0.9
VPS53-210ENST00000571456 ASB12Q8WXK4 309 aa20.69■□□□□ 0.9
VPS53-210ENST00000571456 TUBB2BQ9BVA1 445 aa20.69■□□□□ 0.9
VPS53-210ENST00000571456 CD93Q9NPY3 652 aa20.69■□□□□ 0.9
VPS53-210ENST00000571456 SUSD2Q9UGT4 822 aa20.69■□□□□ 0.9
VPS53-210ENST00000571456 DMTF1Q9Y222 760 aa20.69■□□□□ 0.9
VPS53-210ENST00000571456 ERI2A8K979 691 aaKnown RBP20.68■□□□□ 0.9
VPS53-210ENST00000571456 CCDC188H7C350 402 aa20.68■□□□□ 0.9
VPS53-210ENST00000571456 LATO43561 262 aa20.68■□□□□ 0.9
VPS53-210ENST00000571456 RNGTTO60942 597 aaKnown RBP20.68■□□□□ 0.9
VPS53-210ENST00000571456 PHF2O75151 1096 aa20.68■□□□□ 0.9
VPS53-210ENST00000571456 EPHB1P54762 984 aa20.68■□□□□ 0.9
VPS53-210ENST00000571456 TAS2R38P59533 333 aa20.68■□□□□ 0.9
VPS53-210ENST00000571456 CDK18Q07002 472 aa20.68■□□□□ 0.9
VPS53-210ENST00000571456 TMEM52BQ4KMG9 183 aa20.68■□□□□ 0.9
VPS53-210ENST00000571456 LYSMD4Q5XG99 296 aa20.68■□□□□ 0.9
VPS53-210ENST00000571456 B4GALNT4Q76KP1 1039 aa20.68■□□□□ 0.9
VPS53-210ENST00000571456 CREG2Q8IUH2 290 aa20.68■□□□□ 0.9
VPS53-210ENST00000571456 SYT12Q8IV01 421 aa20.68■□□□□ 0.9
VPS53-210ENST00000571456 PDCD6IPQ8WUM4 868 aaKnown RBP20.68■□□□□ 0.9
VPS53-210ENST00000571456 DNASE2BQ8WZ79 361 aa20.68■□□□□ 0.9
VPS53-210ENST00000571456 MAGOHBQ96A72 148 aaKnown RBP20.68■□□□□ 0.9
VPS53-210ENST00000571456 IFT43Q96FT9 208 aa20.68■□□□□ 0.9
VPS53-210ENST00000571456 SCRN2Q96FV2 425 aa20.68■□□□□ 0.9
VPS53-210ENST00000571456 MS4A14Q96JA4 679 aa20.68■□□□□ 0.9
VPS53-210ENST00000571456 C16orf45Q96MC5 204 aaPredicted RBP20.68■□□□□ 0.9
VPS53-210ENST00000571456 RBM15Q96T37 977 aaKnown RBP eCLIP20.68■□□□□ 0.9
VPS53-210ENST00000571456 PAK5Q9P286 719 aa20.68■□□□□ 0.9
VPS53-210ENST00000571456 ZBTB32Q9Y2Y4 487 aaPredicted RBP20.68■□□□□ 0.9
VPS53-210ENST00000571456 CFAP46Q8IYW2 2715 aa20.67■□□□□ 0.9
VPS53-210ENST00000571456 MEI4A8MW99 385 aa20.67■□□□□ 0.9
VPS53-210ENST00000571456 RIOK3O14730 519 aaKnown RBP20.67■□□□□ 0.9
VPS53-210ENST00000571456 PCDH8O95206 1070 aa20.67■□□□□ 0.9
VPS53-210ENST00000571456 FDFT1P37268 417 aa20.67■□□□□ 0.9
VPS53-210ENST00000571456 ABL2P42684 1182 aa20.67■□□□□ 0.9
VPS53-210ENST00000571456 C19orf57Q0VDD7 668 aa20.67■□□□□ 0.9
VPS53-210ENST00000571456 SNX1Q13596 522 aa20.67■□□□□ 0.9
VPS53-210ENST00000571456 SETMARQ53H47 684 aaPredicted RBP20.67■□□□□ 0.9
VPS53-210ENST00000571456 SLC23A3Q6PIS1 610 aa20.67■□□□□ 0.9
VPS53-210ENST00000571456 GSTA5Q7RTV2 222 aa20.67■□□□□ 0.9
VPS53-210ENST00000571456 HORMAD1Q86X24 394 aa20.67■□□□□ 0.9
VPS53-210ENST00000571456 KLHDC8BQ8IXV7 354 aa20.67■□□□□ 0.9
VPS53-210ENST00000571456 FRMD1Q8N878 549 aa20.67■□□□□ 0.9
VPS53-210ENST00000571456 FAM174AQ8TBP5 190 aa20.67■□□□□ 0.9
VPS53-210ENST00000571456 CCDC110Q8TBZ0 833 aa20.67■□□□□ 0.9
VPS53-210ENST00000571456 PIH1D2Q8WWB5 315 aa20.67■□□□□ 0.9
VPS53-210ENST00000571456 MCCC1Q96RQ3 725 aaPredicted RBP20.67■□□□□ 0.9
VPS53-210ENST00000571456 LYSMD1Q96S90 227 aa20.67■□□□□ 0.9
VPS53-210ENST00000571456 C1QTNF7Q9BXJ2 289 aa20.67■□□□□ 0.9
VPS53-210ENST00000571456 GOLGA4Q13439 2230 aaKnown RBP20.67■□□□□ 0.9
VPS53-210ENST00000571456 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa20.66■□□□□ 0.9
VPS53-210ENST00000571456 A0A0J9YYE9 177 aa20.66■□□□□ 0.9
VPS53-210ENST00000571456 TTC24A2A3L6 582 aaPredicted RBP20.66■□□□□ 0.9
VPS53-210ENST00000571456 ANKRD66B4E2M5 251 aa20.66■□□□□ 0.9
VPS53-210ENST00000571456 PSMD11O00231 422 aa20.66■□□□□ 0.9
VPS53-210ENST00000571456 ZNF185O15231 689 aa20.66■□□□□ 0.9
VPS53-210ENST00000571456 GJB3O75712 270 aa20.66■□□□□ 0.9
VPS53-210ENST00000571456 NDST3O95803 873 aa20.66■□□□□ 0.9
VPS53-210ENST00000571456 GAS8O95995 478 aa20.66■□□□□ 0.9
VPS53-210ENST00000571456 TRBC1P01850 177 aa20.66■□□□□ 0.9
VPS53-210ENST00000571456 HLA-DPA1P20036 260 aa20.66■□□□□ 0.9
VPS53-210ENST00000571456 CD27P26842 260 aa20.66■□□□□ 0.9
VPS53-210ENST00000571456 MMP12P39900 470 aa20.66■□□□□ 0.9
VPS53-210ENST00000571456 ATXN3P54252 364 aaPredicted RBP20.66■□□□□ 0.9
VPS53-210ENST00000571456 DPPA4Q7L190 304 aa20.66■□□□□ 0.9
VPS53-210ENST00000571456 TMEFF1Q8IYR6 380 aa20.66■□□□□ 0.9
VPS53-210ENST00000571456 CXorf40AQ8TE69 158 aa20.66■□□□□ 0.9
VPS53-210ENST00000571456 NSMCE3Q96MG7 304 aa20.66■□□□□ 0.9
VPS53-210ENST00000571456 HSPA12BQ96MM6 686 aa20.66■□□□□ 0.9
VPS53-210ENST00000571456 FSD1LQ9BXM9 530 aa20.66■□□□□ 0.9
VPS53-210ENST00000571456 C6orf106Q9H6K1 298 aaPredicted RBP20.66■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms