RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 PRKAR1AP10644 381 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 P4HA1P13674 534 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 CCNB1P14635 433 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 ANPEPP15144 967 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 ITGA2P17301 1181 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 GCSHP23434 173 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 CYP3A7P24462 503 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 EEF1GP26641 437 aaKnown RBP3.3□□□□□ -1.88
VPS35-208ENST00000568612 LRPAP1P30533 357 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 STX2P32856 288 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 ACSL1P33121 698 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 RCVRNP35243 200 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 KRT2P35908 639 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 LONP1P36776 959 aaKnown RBP3.3□□□□□ -1.88
VPS35-208ENST00000568612 BMPR1AP36894 532 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 GPD2P43304 727 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 MAGEA11P43364 429 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 RECQLP46063 649 aaPredicted RBP3.3□□□□□ -1.88
VPS35-208ENST00000568612 AVPR1BP47901 424 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 PIP4K2AP48426 406 aaPredicted RBP3.3□□□□□ -1.88
VPS35-208ENST00000568612 SLC9A3P48764 834 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 HARS2P49590 506 aaKnown RBP3.3□□□□□ -1.88
VPS35-208ENST00000568612 PPM1FP49593 454 aaPredicted RBP3.3□□□□□ -1.88
VPS35-208ENST00000568612 HNRNPMP52272 730 aaKnown RBP eCLIP3.3□□□□□ -1.886e-6■■■■□ 20.3
VPS35-208ENST00000568612 VAV2P52735 878 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 AP2S1P53680 142 aaPredicted RBP3.3□□□□□ -1.88
VPS35-208ENST00000568612 SEC24CP53992 1094 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 AP1S2P56377 157 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 RAB14P61106 215 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 RPL26P61254 145 aaKnown RBP3.3□□□□□ -1.88
VPS35-208ENST00000568612 NOMO3P69849 1222 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 ECT2LQ008S8 904 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 TFAP4Q01664 338 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 OCA2Q04671 838 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 KRT17Q04695 432 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 RAD51Q06609 339 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 C2orf54Q08AI8 447 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 CDC16Q13042 620 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 SGCGQ13326 291 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 COTL1Q14019 142 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 ERV3-1Q14264 604 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 FRG1Q14331 258 aaKnown RBP3.3□□□□□ -1.88
VPS35-208ENST00000568612 KRT32Q14532 448 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 SGCAQ16586 387 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 CCNG2Q16589 344 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 KRT24Q2M2I5 525 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 RGS21Q2M5E4 152 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 SMU1Q2TAY7 513 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 EDRF1Q3B7T1 1238 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 TBRG1Q3YBR2 411 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 GALNTL6Q49A17 601 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 NOMO2Q5JPE7 1267 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 C6orf10Q5SRN2 563 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 DACT2Q5SW24 774 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 SLX4IPQ5VYV7 408 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 RESP18Q5W5W9 173 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 METRNLQ641Q3 311 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 RWDD4Q6NW29 188 aaKnown RBP3.3□□□□□ -1.88
VPS35-208ENST00000568612 MZT2BQ6NZ67 158 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 MZT2AQ6P582 158 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP3.3□□□□□ -1.88
VPS35-208ENST00000568612 DCDC5Q6ZRR9 648 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 C11orf57Q6ZUT1 292 aaPredicted RBP3.3□□□□□ -1.88
VPS35-208ENST00000568612 TOGARAM2Q6ZUX3 1019 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 PLEKHM3Q6ZWE6 761 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 ASRGL1Q7L266 308 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 LPCAT2Q7L5N7 544 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 MAEAQ7L5Y9 396 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 MIER3Q7Z3K6 550 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 NET1Q7Z628 596 aaPredicted RBP3.3□□□□□ -1.88
VPS35-208ENST00000568612 GALNT5Q7Z7M9 940 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 PRUNE1Q86TP1 453 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 DNAAF5Q86Y56 855 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 ERO1BQ86YB8 467 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 WDR49Q8IV35 697 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 P3H2Q8IVL5 708 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 VSTM4Q8IW00 320 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 ARHGEF19Q8IW93 802 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 DHX40Q8IX18 779 aaKnown RBP3.3□□□□□ -1.88
VPS35-208ENST00000568612 MB21D2Q8IYB1 491 aaPredicted RBP3.3□□□□□ -1.88
VPS35-208ENST00000568612 COLGALT2Q8IYK4 626 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 PM20D2Q8IYS1 436 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 ELMOD2Q8IZ81 293 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 ADGRG5Q8IZF4 528 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 CPXCR1Q8N123 301 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 TMEM132CQ8N3T6 1108 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 LRRC71Q8N4P6 559 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 MREGQ8N565 214 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 DCBLD1Q8N8Z6 715 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 BEND2Q8NDZ0 799 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 IPMKQ8NFU5 416 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 PLBD2Q8NHP8 589 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 TRAF3IP1Q8TDR0 691 aaPredicted RBP3.3□□□□□ -1.88
VPS35-208ENST00000568612 GANCQ8TET4 914 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 DDI1Q8WTU0 396 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 SLC44A1Q8WWI5 657 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 NELFBQ8WX92 580 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 ASB10Q8WXI3 467 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 MRPS27Q92552 414 aaKnown RBP3.3□□□□□ -1.88
VPS35-208ENST00000568612 BORCS5Q969J3 196 aa3.3□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms