RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 SLC14A1Q13336 389 aa9.83□□□□□ -0.84
CLK3-220ENST00000567992 CDKN3Q16667 212 aa9.83□□□□□ -0.84
CLK3-220ENST00000567992 QPCTQ16769 361 aa9.83□□□□□ -0.84
CLK3-220ENST00000567992 KDELC1Q6UW63 502 aa9.83□□□□□ -0.84
CLK3-220ENST00000567992 Q6ZSR6 202 aa9.83□□□□□ -0.84
CLK3-220ENST00000567992 KANSL1Q7Z3B3 1105 aa9.83□□□□□ -0.84
CLK3-220ENST00000567992 HSD11B1LQ7Z5J1 315 aa9.83□□□□□ -0.84
CLK3-220ENST00000567992 PTAR1Q7Z6K3 402 aaPredicted RBP9.83□□□□□ -0.84
CLK3-220ENST00000567992 CDKL3Q8IVW4 592 aaPredicted RBP9.83□□□□□ -0.84
CLK3-220ENST00000567992 PELI3Q8N2H9 469 aa9.83□□□□□ -0.84
CLK3-220ENST00000567992 SPATA22Q8NHS9 363 aa9.83□□□□□ -0.84
CLK3-220ENST00000567992 SLC35B2Q8TB61 432 aa9.83□□□□□ -0.84
CLK3-220ENST00000567992 BAHD1Q8TBE0 780 aaPredicted RBP9.83□□□□□ -0.84
CLK3-220ENST00000567992 UBE2Q2Q8WVN8 375 aa9.83□□□□□ -0.84
CLK3-220ENST00000567992 KLHDC7BQ96G42 594 aa9.83□□□□□ -0.84
CLK3-220ENST00000567992 OXNAD1Q96HP4 312 aaPredicted RBP9.83□□□□□ -0.84
CLK3-220ENST00000567992 ALS2CR12Q96Q35 445 aa9.83□□□□□ -0.84
CLK3-220ENST00000567992 LYSMD1Q96S90 227 aa9.83□□□□□ -0.84
CLK3-220ENST00000567992 ELF4Q99607 663 aaPredicted RBP9.83□□□□□ -0.84
CLK3-220ENST00000567992 CARD9Q9H257 536 aa9.83□□□□□ -0.84
CLK3-220ENST00000567992 USP29Q9HBJ7 922 aa9.83□□□□□ -0.84
CLK3-220ENST00000567992 PCDH9Q9HC56 1237 aa9.83□□□□□ -0.84
CLK3-220ENST00000567992 GDF3Q9NR23 364 aa9.83□□□□□ -0.84
CLK3-220ENST00000567992 TM7SF3Q9NS93 570 aa9.83□□□□□ -0.84
CLK3-220ENST00000567992 HAUS2Q9NVX0 235 aa9.83□□□□□ -0.84
CLK3-220ENST00000567992 PNMA8BQ9ULN7 279 aaPredicted RBP9.83□□□□□ -0.84
CLK3-220ENST00000567992 PCDHGB2Q9Y5G2 931 aa9.83□□□□□ -0.84
CLK3-220ENST00000567992 COL5A1P20908 1838 aaPredicted RBP9.83□□□□□ -0.84
CLK3-220ENST00000567992 H7C0C1 242 aa9.82□□□□□ -0.84
CLK3-220ENST00000567992 PSMD11O00231 422 aa9.82□□□□□ -0.84
CLK3-220ENST00000567992 FPGTO14772 594 aa9.82□□□□□ -0.84
CLK3-220ENST00000567992 LZTS3O60299 673 aaPredicted RBP9.82□□□□□ -0.84
CLK3-220ENST00000567992 PCDHGA12O60330 932 aa9.82□□□□□ -0.84
CLK3-220ENST00000567992 CBFA2T3O75081 653 aa9.82□□□□□ -0.84
CLK3-220ENST00000567992 NEBLO76041 1014 aa9.82□□□□□ -0.84
CLK3-220ENST00000567992 RECQL5O94762 991 aaPredicted RBP9.82□□□□□ -0.84
CLK3-220ENST00000567992 C1SP09871 688 aa9.82□□□□□ -0.84
CLK3-220ENST00000567992 CYP2A6P11509 494 aaPredicted RBP9.82□□□□□ -0.84
CLK3-220ENST00000567992 CSRP1P21291 193 aaKnown RBP9.82□□□□□ -0.84
CLK3-220ENST00000567992 RABIFP47224 123 aa9.82□□□□□ -0.84
CLK3-220ENST00000567992 ATP5OP48047 213 aa9.82□□□□□ -0.84
CLK3-220ENST00000567992 RXRGP48443 463 aa9.82□□□□□ -0.84
CLK3-220ENST00000567992 RPL26P61254 145 aaKnown RBP9.82□□□□□ -0.84
CLK3-220ENST00000567992 FZD2Q14332 565 aa9.82□□□□□ -0.84
CLK3-220ENST00000567992 GALNT3Q14435 633 aa9.82□□□□□ -0.84
CLK3-220ENST00000567992 LRRC14Q15048 493 aa9.82□□□□□ -0.84
CLK3-220ENST00000567992 RPS6KA1Q15418 735 aa9.82□□□□□ -0.84
CLK3-220ENST00000567992 SIX1Q15475 284 aaPredicted RBP9.82□□□□□ -0.84
CLK3-220ENST00000567992 CCDC181Q5TID7 509 aa9.82□□□□□ -0.84
CLK3-220ENST00000567992 LRRC66Q68CR7 880 aa9.82□□□□□ -0.84
CLK3-220ENST00000567992 CRTC1Q6UUV9 634 aa9.82□□□□□ -0.84
CLK3-220ENST00000567992 RFLNAQ6ZTI6 216 aa9.82□□□□□ -0.84
CLK3-220ENST00000567992 NYAP1Q6ZVC0 841 aa9.82□□□□□ -0.84
CLK3-220ENST00000567992 USP45Q70EL2 814 aa9.82□□□□□ -0.84
CLK3-220ENST00000567992 SLC13A5Q86YT5 568 aaPredicted RBP9.82□□□□□ -0.84
CLK3-220ENST00000567992 NAXDQ8IW45 347 aa9.82□□□□□ -0.84
CLK3-220ENST00000567992 PLA2G15Q8NCC3 412 aa9.82□□□□□ -0.84
CLK3-220ENST00000567992 DEFB124Q8NES8 71 aa9.82□□□□□ -0.84
CLK3-220ENST00000567992 LPCAT1Q8NF37 534 aa9.82□□□□□ -0.84
CLK3-220ENST00000567992 TRIM58Q8NG06 486 aa9.82□□□□□ -0.84
CLK3-220ENST00000567992 FAM174AQ8TBP5 190 aa9.82□□□□□ -0.84
CLK3-220ENST00000567992 SAP25Q8TEE9 199 aa9.82□□□□□ -0.84
CLK3-220ENST00000567992 FUBP1Q96AE4 644 aaKnown RBP9.82□□□□□ -0.84
CLK3-220ENST00000567992 SKA1Q96BD8 255 aa9.82□□□□□ -0.84
CLK3-220ENST00000567992 DTD2Q96FN9 168 aa9.82□□□□□ -0.84
CLK3-220ENST00000567992 CAMK1GQ96NX5 476 aa9.82□□□□□ -0.84
CLK3-220ENST00000567992 FCRL5Q96RD9 977 aa9.82□□□□□ -0.84
CLK3-220ENST00000567992 VAT1Q99536 393 aa9.82□□□□□ -0.84
CLK3-220ENST00000567992 GBA3Q9H227 469 aa9.82□□□□□ -0.84
CLK3-220ENST00000567992 KLHL8Q9P2G9 620 aaPredicted RBP9.82□□□□□ -0.84
CLK3-220ENST00000567992 RPL26L1Q9UNX3 145 aaKnown RBP9.82□□□□□ -0.84
CLK3-220ENST00000567992 BTBD3Q9Y2F9 522 aa9.82□□□□□ -0.84
CLK3-220ENST00000567992 CEP295Q9C0D2 2601 aa9.82□□□□□ -0.84
CLK3-220ENST00000567992 MYLKQ15746 1914 aa9.82□□□□□ -0.84
CLK3-220ENST00000567992 ZNF106Q9H2Y7 1883 aaKnown RBP9.81□□□□□ -0.84
CLK3-220ENST00000567992 ARID1BQ8NFD5 2236 aaPredicted RBP9.81□□□□□ -0.84
CLK3-220ENST00000567992 SPTY2D1-AS1A0A0U1RR47 76 aa9.81□□□□□ -0.84
CLK3-220ENST00000567992 USP27XA6NNY8 438 aa9.81□□□□□ -0.84
CLK3-220ENST00000567992 ANKRD66B4E2M5 251 aa9.81□□□□□ -0.84
CLK3-220ENST00000567992 F5H423 210 aaPredicted RBP9.81□□□□□ -0.84
CLK3-220ENST00000567992 K7ESM1 405 aa9.81□□□□□ -0.84
CLK3-220ENST00000567992 GIPC1O14908 333 aa9.81□□□□□ -0.84
CLK3-220ENST00000567992 KCNN4O15554 427 aa9.81□□□□□ -0.84
CLK3-220ENST00000567992 SH3BP5O60239 455 aa9.81□□□□□ -0.84
CLK3-220ENST00000567992 MAGEC1O60732 1142 aa9.81□□□□□ -0.84
CLK3-220ENST00000567992 PMPCBO75439 489 aa9.81□□□□□ -0.84
CLK3-220ENST00000567992 KCNK5O95279 499 aa9.81□□□□□ -0.84
CLK3-220ENST00000567992 SOD1P00441 154 aa9.81□□□□□ -0.84
CLK3-220ENST00000567992 ATXN1LP0C7T5 689 aaKnown RBP9.81□□□□□ -0.84
CLK3-220ENST00000567992 CA4P22748 312 aa9.81□□□□□ -0.84
CLK3-220ENST00000567992 ETV3P41162 512 aa9.81□□□□□ -0.84
CLK3-220ENST00000567992 CETN2P41208 172 aa9.81□□□□□ -0.84
CLK3-220ENST00000567992 STC1P52823 247 aa9.81□□□□□ -0.84
CLK3-220ENST00000567992 GDF10P55107 478 aa9.81□□□□□ -0.84
CLK3-220ENST00000567992 PTSQ03393 145 aa9.81□□□□□ -0.84
CLK3-220ENST00000567992 CDK18Q07002 472 aa9.81□□□□□ -0.84
CLK3-220ENST00000567992 EIF2B5Q13144 721 aaKnown RBP9.81□□□□□ -0.84
CLK3-220ENST00000567992 PDE1CQ14123 709 aaPredicted RBP9.81□□□□□ -0.84
CLK3-220ENST00000567992 OASLQ15646 514 aaKnown RBP9.81□□□□□ -0.84
CLK3-220ENST00000567992 SEL1L2Q5TEA6 688 aa9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms