RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 TSGA13Q96PP4 275 aa13.52□□□□□ -0.25
CLK3-218ENST00000566926 NUDCD1Q96RS6 583 aa13.52□□□□□ -0.25
CLK3-218ENST00000566926 CDC6Q99741 560 aa13.52□□□□□ -0.25
CLK3-218ENST00000566926 BRD8Q9H0E9 1235 aa13.52□□□□□ -0.25
CLK3-218ENST00000566926 SCUBE2Q9NQ36 999 aa13.52□□□□□ -0.25
CLK3-218ENST00000566926 GOLGA4Q13439 2230 aaKnown RBP13.52□□□□□ -0.25
CLK3-218ENST00000566926 IGLON5A6NGN9 336 aa13.51□□□□□ -0.25
CLK3-218ENST00000566926 TOR1BO14657 336 aa13.51□□□□□ -0.25
CLK3-218ENST00000566926 FPGTO14772 594 aa13.51□□□□□ -0.25
CLK3-218ENST00000566926 MATN3O15232 486 aa13.51□□□□□ -0.25
CLK3-218ENST00000566926 RAD51CO43502 376 aa13.51□□□□□ -0.25
CLK3-218ENST00000566926 ERLIN1O75477 346 aa13.51□□□□□ -0.25
CLK3-218ENST00000566926 PEX11BO96011 259 aa13.51□□□□□ -0.25
CLK3-218ENST00000566926 RHOXF2BP0C7M4 288 aa13.51□□□□□ -0.25
CLK3-218ENST00000566926 THEGLP0DJG4 465 aa13.51□□□□□ -0.25
CLK3-218ENST00000566926 TNFRSF8P28908 595 aa13.51□□□□□ -0.25
CLK3-218ENST00000566926 STIP1P31948 543 aaKnown RBP13.51□□□□□ -0.25
CLK3-218ENST00000566926 GRK6P43250 576 aa13.51□□□□□ -0.25
CLK3-218ENST00000566926 RGRP47804 291 aa13.51□□□□□ -0.25
CLK3-218ENST00000566926 RXRGP48443 463 aa13.51□□□□□ -0.25
CLK3-218ENST00000566926 DRG2P55039 364 aaKnown RBP13.51□□□□□ -0.25
CLK3-218ENST00000566926 BRD3Q15059 726 aa13.51□□□□□ -0.25
CLK3-218ENST00000566926 NOMO1Q15155 1222 aa13.51□□□□□ -0.25
CLK3-218ENST00000566926 MAP9Q49MG5 647 aa13.51□□□□□ -0.25
CLK3-218ENST00000566926 TMEM52BQ4KMG9 183 aa13.51□□□□□ -0.25
CLK3-218ENST00000566926 N4BP2L1Q5TBK1 243 aaPredicted RBP13.51□□□□□ -0.25
CLK3-218ENST00000566926 TEX26Q8N6G2 289 aa13.51□□□□□ -0.25
CLK3-218ENST00000566926 PQLC3Q8N755 202 aa13.51□□□□□ -0.25
CLK3-218ENST00000566926 PLD5Q8N7P1 536 aa13.51□□□□□ -0.25
CLK3-218ENST00000566926 CCDC89Q8N998 374 aa13.51□□□□□ -0.25
CLK3-218ENST00000566926 ACTL9Q8TC94 416 aa13.51□□□□□ -0.25
CLK3-218ENST00000566926 C1orf54Q8WWF1 131 aa13.51□□□□□ -0.25
CLK3-218ENST00000566926 ECHDC3Q96DC8 303 aa13.51□□□□□ -0.25
CLK3-218ENST00000566926 MYOCQ99972 504 aa13.51□□□□□ -0.25
CLK3-218ENST00000566926 MGME1Q9BQP7 344 aa13.51□□□□□ -0.25
CLK3-218ENST00000566926 RHOXF2Q9BQY4 288 aa13.51□□□□□ -0.25
CLK3-218ENST00000566926 LRRC1Q9BTT6 524 aa13.51□□□□□ -0.25
CLK3-218ENST00000566926 ANKZF1Q9H8Y5 726 aa13.51□□□□□ -0.25
CLK3-218ENST00000566926 RAB21Q9UL25 225 aa13.51□□□□□ -0.25
CLK3-218ENST00000566926 ATP8A1Q9Y2Q0 1164 aa13.51□□□□□ -0.25
CLK3-218ENST00000566926 CCDC151A5D8V7 595 aa13.5□□□□□ -0.25
CLK3-218ENST00000566926 HACD1B0YJ81 288 aa13.5□□□□□ -0.25
CLK3-218ENST00000566926 GIPC1O14908 333 aa13.5□□□□□ -0.25
CLK3-218ENST00000566926 HEXIM1O94992 359 aaKnown RBP13.5□□□□□ -0.25
CLK3-218ENST00000566926 RABIFP47224 123 aa13.5□□□□□ -0.25
CLK3-218ENST00000566926 DYNLT1P63172 113 aa13.5□□□□□ -0.25
CLK3-218ENST00000566926 OTUD4Q01804 1114 aaKnown RBP13.5□□□□□ -0.25
CLK3-218ENST00000566926 PPP1R7Q15435 360 aa13.5□□□□□ -0.25
CLK3-218ENST00000566926 OASLQ15646 514 aaKnown RBP13.5□□□□□ -0.25
CLK3-218ENST00000566926 TRIP6Q15654 476 aaKnown RBP13.5□□□□□ -0.25
CLK3-218ENST00000566926 KYAT3Q6YP21 454 aaKnown RBP13.5□□□□□ -0.25
CLK3-218ENST00000566926 ABI3BPQ7Z7G0 1075 aa13.5□□□□□ -0.25
CLK3-218ENST00000566926 JAMLQ86YT9 394 aa13.5□□□□□ -0.25
CLK3-218ENST00000566926 CDKL3Q8IVW4 592 aaPredicted RBP13.5□□□□□ -0.25
CLK3-218ENST00000566926 NDUFAF2Q8N183 169 aa13.5□□□□□ -0.25
CLK3-218ENST00000566926 BBOF1Q8ND07 529 aa13.5□□□□□ -0.25
CLK3-218ENST00000566926 CCNYQ8ND76 341 aa13.5□□□□□ -0.25
CLK3-218ENST00000566926 RHBDD1Q8TEB9 315 aa13.5□□□□□ -0.25
CLK3-218ENST00000566926 SEC14L1Q92503 715 aa13.5□□□□□ -0.25
CLK3-218ENST00000566926 MAML1Q92585 1016 aa13.5□□□□□ -0.25
CLK3-218ENST00000566926 HDAC11Q96DB2 347 aa13.5□□□□□ -0.25
CLK3-218ENST00000566926 IFT43Q96FT9 208 aa13.5□□□□□ -0.25
CLK3-218ENST00000566926 HERPUD2Q9BSE4 406 aa13.5□□□□□ -0.25
CLK3-218ENST00000566926 POLR1EQ9GZS1 481 aaKnown RBP13.5□□□□□ -0.25
CLK3-218ENST00000566926 NT5MQ9NPB1 228 aa13.5□□□□□ -0.25
CLK3-218ENST00000566926 FZD3Q9NPG1 666 aa13.5□□□□□ -0.25
CLK3-218ENST00000566926 PCDH12Q9NPG4 1184 aa13.5□□□□□ -0.25
CLK3-218ENST00000566926 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.5□□□□□ -0.25
CLK3-218ENST00000566926 PCOLCE2Q9UKZ9 415 aa13.5□□□□□ -0.25
CLK3-218ENST00000566926 ZNF148Q9UQR1 794 aa13.5□□□□□ -0.25
CLK3-218ENST00000566926 ITM2BQ9Y287 266 aa13.5□□□□□ -0.25
CLK3-218ENST00000566926 V9GYY5 206 aaPredicted RBP13.5□□□□□ -0.25
CLK3-218ENST00000566926 COL5A1P20908 1838 aaPredicted RBP13.5□□□□□ -0.25
CLK3-218ENST00000566926 NCOR2Q9Y618 2525 aa13.5□□□□□ -0.25
CLK3-218ENST00000566926 TRAFD1O14545 582 aaPredicted RBP13.49□□□□□ -0.25
CLK3-218ENST00000566926 PPP1R12AO14974 1030 aaPredicted RBP13.49□□□□□ -0.25
CLK3-218ENST00000566926 MUSKO15146 869 aa13.49□□□□□ -0.25
CLK3-218ENST00000566926 MMP20O60882 483 aa13.49□□□□□ -0.25
CLK3-218ENST00000566926 TRIM16O95361 564 aa13.49□□□□□ -0.25
CLK3-218ENST00000566926 CCNB1P14635 433 aa13.49□□□□□ -0.25
CLK3-218ENST00000566926 CR2P20023 1033 aa13.49□□□□□ -0.25
CLK3-218ENST00000566926 CA4P22748 312 aa13.49□□□□□ -0.25
CLK3-218ENST00000566926 EIF3EP60228 445 aaKnown RBP13.49□□□□□ -0.25
CLK3-218ENST00000566926 FAM193AP78312 1265 aa13.49□□□□□ -0.25
CLK3-218ENST00000566926 SIM1P81133 766 aaPredicted RBP13.49□□□□□ -0.25
CLK3-218ENST00000566926 ADCY2Q08462 1091 aa13.49□□□□□ -0.25
CLK3-218ENST00000566926 ITKQ08881 620 aa13.49□□□□□ -0.25
CLK3-218ENST00000566926 PTK2BQ14289 1009 aa13.49□□□□□ -0.25
CLK3-218ENST00000566926 FGL2Q14314 439 aa13.49□□□□□ -0.25
CLK3-218ENST00000566926 PDK1Q15118 436 aa13.49□□□□□ -0.25
CLK3-218ENST00000566926 LLGL1Q15334 1064 aa13.49□□□□□ -0.25
CLK3-218ENST00000566926 LRRC73Q5JTD7 316 aa13.49□□□□□ -0.25
CLK3-218ENST00000566926 C4orf22Q6V702 233 aa13.49□□□□□ -0.25
CLK3-218ENST00000566926 GCNT7Q6ZNI0 430 aa13.49□□□□□ -0.25
CLK3-218ENST00000566926 Q6ZSR6 202 aa13.49□□□□□ -0.25
CLK3-218ENST00000566926 PTAR1Q7Z6K3 402 aaPredicted RBP13.49□□□□□ -0.25
CLK3-218ENST00000566926 GLRX5Q86SX6 157 aa13.49□□□□□ -0.25
CLK3-218ENST00000566926 SPATS2Q86XZ4 545 aaKnown RBP13.49□□□□□ -0.25
CLK3-218ENST00000566926 CCDC13Q8IYE1 715 aa13.49□□□□□ -0.25
CLK3-218ENST00000566926 OR13H1Q8NG92 308 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms