RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 ATP5OP48047 213 aa9.25□□□□□ -0.93
VPS35-206ENST00000565228 GRIA4P48058 902 aa9.25□□□□□ -0.93
VPS35-206ENST00000565228 NXPH1P58417 271 aa9.25□□□□□ -0.93
VPS35-206ENST00000565228 PFN3P60673 137 aa9.25□□□□□ -0.93
VPS35-206ENST00000565228 RPS21P63220 83 aaKnown RBP9.25□□□□□ -0.93
VPS35-206ENST00000565228 RAD51Q06609 339 aa9.25□□□□□ -0.93
VPS35-206ENST00000565228 BNIP3Q12983 259 aa9.25□□□□□ -0.93
VPS35-206ENST00000565228 EIF2B5Q13144 721 aaKnown RBP9.25□□□□□ -0.93
VPS35-206ENST00000565228 XRCC4Q13426 336 aa9.25□□□□□ -0.93
VPS35-206ENST00000565228 PTPRCAPQ14761 206 aa9.25□□□□□ -0.93
VPS35-206ENST00000565228 RPS6KA1Q15418 735 aa9.25□□□□□ -0.93
VPS35-206ENST00000565228 PCSK7Q16549 785 aa9.25□□□□□ -0.93
VPS35-206ENST00000565228 ZNF423Q2M1K9 1284 aa9.25□□□□□ -0.93
VPS35-206ENST00000565228 AASDHQ4L235 1098 aaPredicted RBP9.25□□□□□ -0.93
VPS35-206ENST00000565228 SYCP2LQ5T4T6 812 aa9.25□□□□□ -0.93
VPS35-206ENST00000565228 FAXCQ5TGI0 409 aa9.25□□□□□ -0.93
VPS35-206ENST00000565228 KIAA1161Q6NSJ0 714 aa9.25□□□□□ -0.93
VPS35-206ENST00000565228 TECPR1Q7Z6L1 1165 aa9.25□□□□□ -0.93
VPS35-206ENST00000565228 MINDY1Q8N5J2 469 aa9.25□□□□□ -0.93
VPS35-206ENST00000565228 UBL4BQ8N7F7 174 aa9.25□□□□□ -0.93
VPS35-206ENST00000565228 RAB7BQ96AH8 199 aa9.25□□□□□ -0.93
VPS35-206ENST00000565228 FEM1CQ96JP0 617 aa9.25□□□□□ -0.93
VPS35-206ENST00000565228 TMEM121Q9BTD3 319 aa9.25□□□□□ -0.93
VPS35-206ENST00000565228 GTPBP2Q9BX10 602 aaKnown RBP9.25□□□□□ -0.93
VPS35-206ENST00000565228 LGR4Q9BXB1 951 aa9.25□□□□□ -0.93
VPS35-206ENST00000565228 AMACRQ9UHK6 382 aa9.25□□□□□ -0.93
VPS35-206ENST00000565228 BTBD3Q9Y2F9 522 aa9.25□□□□□ -0.93
VPS35-206ENST00000565228 PCYT1BQ9Y5K3 369 aaPredicted RBP9.25□□□□□ -0.93
VPS35-206ENST00000565228 FRYQ5TBA9 3013 aa9.25□□□□□ -0.93
VPS35-206ENST00000565228 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP9.24□□□□□ -0.93
VPS35-206ENST00000565228 LOC285095A0A1B0GVY8 99 aa9.24□□□□□ -0.93
VPS35-206ENST00000565228 DCDC2BA2VCK2 349 aa9.24□□□□□ -0.93
VPS35-206ENST00000565228 HACD1B0YJ81 288 aa9.24□□□□□ -0.93
VPS35-206ENST00000565228 PRAMEF26H0Y7S4 382 aa9.24□□□□□ -0.93
VPS35-206ENST00000565228 TLR4O00206 839 aa9.24□□□□□ -0.93
VPS35-206ENST00000565228 SLC30A4O14863 429 aa9.24□□□□□ -0.93
VPS35-206ENST00000565228 KCNN4O15554 427 aa9.24□□□□□ -0.93
VPS35-206ENST00000565228 LIASO43766 372 aa9.24□□□□□ -0.93
VPS35-206ENST00000565228 PMPCBO75439 489 aa9.24□□□□□ -0.93
VPS35-206ENST00000565228 RECQL5O94762 991 aaPredicted RBP9.24□□□□□ -0.93
VPS35-206ENST00000565228 AGTP01019 485 aa9.24□□□□□ -0.93
VPS35-206ENST00000565228 HNRNPA2B1P22626 353 aaKnown RBP9.24□□□□□ -0.93
VPS35-206ENST00000565228 VIPR1P32241 457 aa9.24□□□□□ -0.93
VPS35-206ENST00000565228 ADRA1AP35348 466 aa9.24□□□□□ -0.93
VPS35-206ENST00000565228 ETV3P41162 512 aa9.24□□□□□ -0.93
VPS35-206ENST00000565228 KCNJ1P48048 391 aa9.24□□□□□ -0.93
VPS35-206ENST00000565228 AFF3P51826 1226 aaKnown RBP9.24□□□□□ -0.93
VPS35-206ENST00000565228 LIMK1P53667 647 aa9.24□□□□□ -0.93
VPS35-206ENST00000565228 SNX1Q13596 522 aa9.24□□□□□ -0.93
VPS35-206ENST00000565228 FZD2Q14332 565 aa9.24□□□□□ -0.93
VPS35-206ENST00000565228 SPARCL1Q14515 664 aa9.24□□□□□ -0.93
VPS35-206ENST00000565228 AGERQ15109 404 aa9.24□□□□□ -0.93
VPS35-206ENST00000565228 SETMARQ53H47 684 aaPredicted RBP9.24□□□□□ -0.93
VPS35-206ENST00000565228 ZNF542PQ5EBM4 170 aa9.24□□□□□ -0.93
VPS35-206ENST00000565228 RALGPS1Q5JS13 557 aa9.24□□□□□ -0.93
VPS35-206ENST00000565228 ZNF569Q5MCW4 686 aa9.24□□□□□ -0.93
VPS35-206ENST00000565228 ANKRD20A2Q5SQ80 823 aa9.24□□□□□ -0.93
VPS35-206ENST00000565228 ARMC12Q5T9G4 340 aa9.24□□□□□ -0.93
VPS35-206ENST00000565228 ANKRD20A1Q5TYW2 823 aa9.24□□□□□ -0.93
VPS35-206ENST00000565228 ANKRD20A3Q5VUR7 823 aa9.24□□□□□ -0.93
VPS35-206ENST00000565228 LRRC66Q68CR7 880 aa9.24□□□□□ -0.93
VPS35-206ENST00000565228 KCTD11Q693B1 232 aa9.24□□□□□ -0.93
VPS35-206ENST00000565228 DENND5AQ6IQ26 1287 aa9.24□□□□□ -0.93
VPS35-206ENST00000565228 TTC27Q6P3X3 843 aa9.24□□□□□ -0.93
VPS35-206ENST00000565228 DBX2Q6ZNG2 339 aa9.24□□□□□ -0.93
VPS35-206ENST00000565228 Q6ZSR6 202 aa9.24□□□□□ -0.93
VPS35-206ENST00000565228 Q6ZVL8 140 aa9.24□□□□□ -0.93
VPS35-206ENST00000565228 PID1Q7Z2X4 250 aa9.24□□□□□ -0.93
VPS35-206ENST00000565228 PIP4P1Q86T03 277 aa9.24□□□□□ -0.93
VPS35-206ENST00000565228 GATAD2AQ86YP4 633 aa9.24□□□□□ -0.93
VPS35-206ENST00000565228 RASGEF1CQ8N431 466 aa9.24□□□□□ -0.93
VPS35-206ENST00000565228 TAB3Q8N5C8 712 aaPredicted RBP9.24□□□□□ -0.93
VPS35-206ENST00000565228 PRELID2Q8N945 189 aa9.24□□□□□ -0.93
VPS35-206ENST00000565228 FAM71DQ8N9W8 422 aa9.24□□□□□ -0.93
VPS35-206ENST00000565228 MFSD2AQ8NA29 543 aa9.24□□□□□ -0.93
VPS35-206ENST00000565228 LPCAT1Q8NF37 534 aa9.24□□□□□ -0.93
VPS35-206ENST00000565228 CEP76Q8TAP6 659 aa9.24□□□□□ -0.93
VPS35-206ENST00000565228 ASB12Q8WXK4 309 aa9.24□□□□□ -0.93
VPS35-206ENST00000565228 SCRN2Q96FV2 425 aa9.24□□□□□ -0.93
VPS35-206ENST00000565228 LENG8Q96PV6 779 aaPredicted RBP9.24□□□□□ -0.93
VPS35-206ENST00000565228 FCRL5Q96RD9 977 aa9.24□□□□□ -0.93
VPS35-206ENST00000565228 APOL2Q9BQE5 337 aa9.24□□□□□ -0.93
VPS35-206ENST00000565228 CARD9Q9H257 536 aa9.24□□□□□ -0.93
VPS35-206ENST00000565228 GAREM1Q9H706 876 aa9.24□□□□□ -0.93
VPS35-206ENST00000565228 PCDH9Q9HC56 1237 aa9.24□□□□□ -0.93
VPS35-206ENST00000565228 AASDHPPTQ9NRN7 309 aa9.24□□□□□ -0.93
VPS35-206ENST00000565228 DNAAF2Q9NVR5 837 aaKnown RBP9.24□□□□□ -0.93
VPS35-206ENST00000565228 UCKL1Q9NWZ5 548 aa9.24□□□□□ -0.93
VPS35-206ENST00000565228 CD84Q9UIB8 345 aa9.24□□□□□ -0.93
VPS35-206ENST00000565228 TMPRSS11EQ9UL52 423 aa9.24□□□□□ -0.93
VPS35-206ENST00000565228 PHTF1Q9UMS5 762 aa9.24□□□□□ -0.93
VPS35-206ENST00000565228 GOLGA4Q13439 2230 aaKnown RBP9.24□□□□□ -0.93
VPS35-206ENST00000565228 ASXL3Q9C0F0 2248 aa9.24□□□□□ -0.93
VPS35-206ENST00000565228 ARHGEF17Q96PE2 2063 aaPredicted RBP9.24□□□□□ -0.93
VPS35-206ENST00000565228 BPTFQ12830 3046 aa9.23□□□□□ -0.93
VPS35-206ENST00000565228 A0A1B0GTQ1 180 aa9.23□□□□□ -0.93
VPS35-206ENST00000565228 CAPN8A6NHC0 703 aa9.23□□□□□ -0.93
VPS35-206ENST00000565228 ANKRD66B4E2M5 251 aa9.23□□□□□ -0.93
VPS35-206ENST00000565228 SCAMP1O15126 338 aa9.23□□□□□ -0.93
VPS35-206ENST00000565228 CASC3O15234 703 aaKnown RBP9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms