RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 CCDC173Q0VFZ6 552 aa17.27■□□□□ 0.36
VPS9D1-203ENST00000563798 SMTNL2Q2TAL5 461 aa17.27■□□□□ 0.36
VPS9D1-203ENST00000563798 TDRD12Q587J7 1177 aaKnown RBP17.27■□□□□ 0.36
VPS9D1-203ENST00000563798 KCTD16Q68DU8 428 aa17.27■□□□□ 0.36
VPS9D1-203ENST00000563798 TXNRD3NBQ6F5E7 133 aa17.27■□□□□ 0.36
VPS9D1-203ENST00000563798 NYAP1Q6ZVC0 841 aa17.27■□□□□ 0.36
VPS9D1-203ENST00000563798 KYQ8NBH2 561 aa17.27■□□□□ 0.36
VPS9D1-203ENST00000563798 GPR156Q8NFN8 814 aa17.27■□□□□ 0.36
VPS9D1-203ENST00000563798 OR56A4Q8NGH8 313 aa17.27■□□□□ 0.36
VPS9D1-203ENST00000563798 OR1E3Q8WZA6 343 aa17.27■□□□□ 0.36
VPS9D1-203ENST00000563798 PDXPQ96GD0 296 aa17.27■□□□□ 0.36
VPS9D1-203ENST00000563798 FCRL3Q96P31 734 aaPredicted RBP17.27■□□□□ 0.36
VPS9D1-203ENST00000563798 DPH1Q9BZG8 443 aa17.27■□□□□ 0.36
VPS9D1-203ENST00000563798 THAP2Q9H0W7 228 aa17.27■□□□□ 0.36
VPS9D1-203ENST00000563798 FGF22Q9HCT0 170 aa17.27■□□□□ 0.36
VPS9D1-203ENST00000563798 B4GALT6Q9UBX8 382 aa17.27■□□□□ 0.36
VPS9D1-203ENST00000563798 GPR34Q9UPC5 381 aa17.27■□□□□ 0.36
VPS9D1-203ENST00000563798 SATB2Q9UPW6 733 aa17.27■□□□□ 0.36
VPS9D1-203ENST00000563798 PPIL1Q9Y3C6 166 aa17.27■□□□□ 0.36
VPS9D1-203ENST00000563798 FASNP49327 2511 aaKnown RBP17.27■□□□□ 0.36
VPS9D1-203ENST00000563798 ANKRD36A6QL64 1941 aa17.27■□□□□ 0.35
VPS9D1-203ENST00000563798 SMG1Q96Q15 3661 aaKnown RBP17.27■□□□□ 0.35
VPS9D1-203ENST00000563798 RP1P56715 2156 aa17.26■□□□□ 0.35
VPS9D1-203ENST00000563798 TEX51A0A1B0GUA7 166 aa17.26■□□□□ 0.35
VPS9D1-203ENST00000563798 TMEM202A6NGA9 273 aa17.26■□□□□ 0.35
VPS9D1-203ENST00000563798 CDRT15L2A8MXV6 281 aa17.26■□□□□ 0.35
VPS9D1-203ENST00000563798 ATXN7O15265 892 aaPredicted RBP17.26■□□□□ 0.35
VPS9D1-203ENST00000563798 IL4RP24394 825 aa17.26■□□□□ 0.35
VPS9D1-203ENST00000563798 SERPINB6P35237 376 aa17.26■□□□□ 0.35
VPS9D1-203ENST00000563798 UCNP55089 124 aa17.26■□□□□ 0.35
VPS9D1-203ENST00000563798 CDH6P55285 790 aa17.26■□□□□ 0.35
VPS9D1-203ENST00000563798 TPM4P67936 248 aa17.26■□□□□ 0.35
VPS9D1-203ENST00000563798 ZNF235Q14590 738 aa17.26■□□□□ 0.35
VPS9D1-203ENST00000563798 PNCKQ6P2M8 343 aa17.26■□□□□ 0.35
VPS9D1-203ENST00000563798 CRTC1Q6UUV9 634 aa17.26■□□□□ 0.35
VPS9D1-203ENST00000563798 GPR155Q7Z3F1 870 aa17.26■□□□□ 0.35
VPS9D1-203ENST00000563798 RD3Q7Z3Z2 195 aa17.26■□□□□ 0.35
VPS9D1-203ENST00000563798 BBS5Q8N3I7 341 aa17.26■□□□□ 0.35
VPS9D1-203ENST00000563798 TEX26Q8N6G2 289 aa17.26■□□□□ 0.35
VPS9D1-203ENST00000563798 WDR36Q8NI36 951 aaKnown RBP17.26■□□□□ 0.35
VPS9D1-203ENST00000563798 HSPH1Q92598 858 aa17.26■□□□□ 0.35
VPS9D1-203ENST00000563798 LGMNQ99538 433 aa17.26■□□□□ 0.35
VPS9D1-203ENST00000563798 GULP1Q9UBP9 304 aa17.26■□□□□ 0.35
VPS9D1-203ENST00000563798 PHTF1Q9UMS5 762 aa17.26■□□□□ 0.35
VPS9D1-203ENST00000563798 NENFQ9UMX5 172 aa17.26■□□□□ 0.35
VPS9D1-203ENST00000563798 PCDHGC4Q9Y5F7 938 aa17.26■□□□□ 0.35
VPS9D1-203ENST00000563798 A0A087X0T9 212 aa17.25■□□□□ 0.35
VPS9D1-203ENST00000563798 CCDC187A0A096LP49 1063 aa17.25■□□□□ 0.35
VPS9D1-203ENST00000563798 PSMD11O00231 422 aa17.25■□□□□ 0.35
VPS9D1-203ENST00000563798 PDE2AO00408 941 aaPredicted RBP17.25■□□□□ 0.35
VPS9D1-203ENST00000563798 HEXIM1O94992 359 aaKnown RBP17.25■□□□□ 0.35
VPS9D1-203ENST00000563798 FAM228BP0C875 321 aa17.25■□□□□ 0.35
VPS9D1-203ENST00000563798 PNLIPP16233 465 aa17.25■□□□□ 0.35
VPS9D1-203ENST00000563798 NFKBIAP25963 317 aa17.25■□□□□ 0.35
VPS9D1-203ENST00000563798 TEAD1P28347 426 aa17.25■□□□□ 0.35
VPS9D1-203ENST00000563798 RBMS1P29558 406 aaKnown RBP17.25■□□□□ 0.35
VPS9D1-203ENST00000563798 VIPR1P32241 457 aa17.25■□□□□ 0.35
VPS9D1-203ENST00000563798 ARSEP51690 589 aa17.25■□□□□ 0.35
VPS9D1-203ENST00000563798 UBASH3AP57075 661 aa17.25■□□□□ 0.35
VPS9D1-203ENST00000563798 SPIDRQ14159 915 aa17.25■□□□□ 0.35
VPS9D1-203ENST00000563798 CNGA3Q16281 694 aa17.25■□□□□ 0.35
VPS9D1-203ENST00000563798 C3orf38Q5JPI3 329 aa17.25■□□□□ 0.35
VPS9D1-203ENST00000563798 CLEC14AQ86T13 490 aa17.25■□□□□ 0.35
VPS9D1-203ENST00000563798 LUZP1Q86V48 1076 aa17.25■□□□□ 0.35
VPS9D1-203ENST00000563798 ATPAF2Q8N5M1 289 aa17.25■□□□□ 0.35
VPS9D1-203ENST00000563798 SNRNP27Q8WVK2 155 aaKnown RBP17.25■□□□□ 0.35
VPS9D1-203ENST00000563798 CCDC74AQ96AQ1 378 aa17.25■□□□□ 0.35
VPS9D1-203ENST00000563798 SCRN2Q96FV2 425 aa17.25■□□□□ 0.35
VPS9D1-203ENST00000563798 LIN37Q96GY3 246 aaPredicted RBP17.25■□□□□ 0.35
VPS9D1-203ENST00000563798 MCCC1Q96RQ3 725 aaPredicted RBP17.25■□□□□ 0.35
VPS9D1-203ENST00000563798 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP17.25■□□□□ 0.35
VPS9D1-203ENST00000563798 NUP85Q9BW27 656 aa17.25■□□□□ 0.35
VPS9D1-203ENST00000563798 TEX101Q9BY14 249 aa17.25■□□□□ 0.35
VPS9D1-203ENST00000563798 WDR26Q9H7D7 661 aa17.25■□□□□ 0.35
VPS9D1-203ENST00000563798 NOD2Q9HC29 1040 aa17.25■□□□□ 0.35
VPS9D1-203ENST00000563798 RABGEF1Q9UJ41 708 aa17.25■□□□□ 0.35
VPS9D1-203ENST00000563798 ANAPC7Q9UJX3 599 aa17.25■□□□□ 0.35
VPS9D1-203ENST00000563798 APPL1Q9UKG1 709 aa17.25■□□□□ 0.35
VPS9D1-203ENST00000563798 TTC24A2A3L6 582 aaPredicted RBP17.24■□□□□ 0.35
VPS9D1-203ENST00000563798 TMX2-CTNND1H3BSU7 103 aa17.24■□□□□ 0.35
VPS9D1-203ENST00000563798 CASC3O15234 703 aaKnown RBP17.24■□□□□ 0.35
VPS9D1-203ENST00000563798 NOBOXO60393 691 aa17.24■□□□□ 0.35
VPS9D1-203ENST00000563798 CPP00450 1065 aa17.24■□□□□ 0.35
VPS9D1-203ENST00000563798 MYCLP1P12525 358 aaPredicted RBP17.24■□□□□ 0.35
VPS9D1-203ENST00000563798 EIF3IQ13347 325 aaKnown RBP17.24■□□□□ 0.35
VPS9D1-203ENST00000563798 ACOX1Q15067 660 aa17.24■□□□□ 0.35
VPS9D1-203ENST00000563798 TSR1Q2NL82 804 aaKnown RBP17.24■□□□□ 0.35
VPS9D1-203ENST00000563798 MARC1Q5VT66 337 aa17.24■□□□□ 0.35
VPS9D1-203ENST00000563798 ALKBH5Q6P6C2 394 aaKnown RBP17.24■□□□□ 0.35
VPS9D1-203ENST00000563798 PELI3Q8N2H9 469 aa17.24■□□□□ 0.35
VPS9D1-203ENST00000563798 ARL14Q8N4G2 192 aa17.24■□□□□ 0.35
VPS9D1-203ENST00000563798 NSMCE1Q8WV22 266 aa17.24■□□□□ 0.35
VPS9D1-203ENST00000563798 KCNE4Q8WWG9 221 aa17.24■□□□□ 0.35
VPS9D1-203ENST00000563798 FATE1Q969F0 183 aa17.24■□□□□ 0.35
VPS9D1-203ENST00000563798 LGR4Q9BXB1 951 aa17.24■□□□□ 0.35
VPS9D1-203ENST00000563798 SIRPGQ9P1W8 387 aa17.24■□□□□ 0.35
VPS9D1-203ENST00000563798 LUC7L2Q9Y383 392 aaKnown RBP17.24■□□□□ 0.35
VPS9D1-203ENST00000563798 A0A1W2PQM1 296 aa17.23■□□□□ 0.35
VPS9D1-203ENST00000563798 SYCE3A1L190 88 aa17.23■□□□□ 0.35
VPS9D1-203ENST00000563798 D6RAR5 112 aa17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms